pycom10g25330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011151
Physical Location & Seq
Forward (+)
26992033 .. 26994826
2794 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 477 bp
ATGAGAATGCTTGTTGTGAAAGAAGTTAGCTTTCAATGGCCGCCAATAGGAGCTCCACTAAACATGCTGAGAGAGGACCATCCAAGCAGCCTTCCTCCTCCTTCCCCTTCTTTCAACAGCTCTGTCAATGCGGTCTCGTTTGGGTTCGTAGCCACTGCCATCCTCATCTCCATGTTCTTAGTCATGGCCATCTTCGAGAGGTTCCTCAGACCCACCTCTCCGGATTTGTCACCGTCCGGCCGCCGTGGGGGTGAAGATCTTGAGGCCCAGATGGGTTTCAATGGAAAGCTCAGCCACCCTTCACCAAAAATGACTGTGTATGCCAGTGGAGTTTCAGTGTTGATGCCTGGAGACGATATCCCCACCTTCATTGCACACCCAGCCCCCGTGCCTTGCCCTCCAGAACGCGTTGTTTTACCTCAGCAGCAACACATTTCATTGCCGAACTCCCCACCTCCACCTCCGCCTCAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.06

Weight (kDa)

6.39

Isoelectric Point (pI)

75.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11120 AT1G11120
fragaria_vesca FvH4_3g04540 FvH4_6g10290
malus_domestica MD05G1181400.v1.1 MD05G1322600.v1.1 MD14G1018300.v1.1
prunus_persica Prupe.4G040100_v2.0.a1
pyrus_communis pycom05g29680 pycom10g25330
rosa_chinensis RchiOBHm_Chr5g0007461
rosa_laevigata RLG00000031458
rosa_multiflora Rmu_ssc0000182.1_g000001
rosa_roxburghii Rroxscaffold_1G00068930
rosa_rugosa Rorug04G0427000
rosa_samantha Rh5AG055400 Rh5BG053000 Rh5CG062800 Rh5DG052000
rosa_wichuraiana Rw5G005470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 408
AccIII TCCGGA 1 cut(s) 220
AciI CCGC 4 cut(s) 41, 131, 241, 464
AcoI YGGCCR 3 cut(s) 38, 186, 238
AfiI CCNNNNNNNGG 2 cut(s) 47, 247
AflIII ACRYGT 1 cut(s) 406
AgsI TTSAA 3 cut(s) 35, 115, 280
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 4 cut(s) 30, 53, 120, 289
AluI AGCT 4 cut(s) 30, 53, 120, 289
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 2 cut(s) 139, 345
Aor13HI TCCGGA 1 cut(s) 220
AoxI GGCC 4 cut(s) 38, 186, 238, 264
ApeKI GCWGC 2 cut(s) 87, 424
AspS9I GGNCC 2 cut(s) 76, 265
AsuHPI GGTGA 3 cut(s) 222, 263, 294
AvaII GGWCC 1 cut(s) 76
BalI TGGCCA 1 cut(s) 188
BanII GRGCYC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 55
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 2 cut(s) 99, 436
BccI CCATC 4 cut(s) 87, 167, 197, 265
BceAI ACGGC 1 cut(s) 228
BciT130I CCWGG 1 cut(s) 348
BcoDI GTCTC 2 cut(s) 139, 345
BglII AGATCT 1 cut(s) 256
BisI GCNGC 4 cut(s) 41, 88, 241, 425
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 4 cut(s) 42, 89, 242, 426
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 76, 265
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 333
BpmI CTGGAG 2 cut(s) 369, 384
Bpu10I CCTNAGC 1 cut(s) 420
Bpu1102I GCTNAGC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 247
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 2 cut(s) 369, 437
BseAI TCCGGA 1 cut(s) 220
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 79, 159
BseLI CCNNNNNNNGG 2 cut(s) 47, 247
BseMI GCAATG 2 cut(s) 369, 437
BseMII CTCAG 4 cut(s) 59, 220, 304, 434
BseNI ACTGG 1 cut(s) 324
BseRI GAGGAG 1 cut(s) 87
BseX3I CGGCCG 1 cut(s) 238
BseXI GCAGC 2 cut(s) 99, 436
BseYI CCCAGC 1 cut(s) 379
Bsh1236I CGCG 1 cut(s) 408
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 4 cut(s) 40, 188, 240, 266
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 55
BsiSI CCGG 2 cut(s) 221, 237
BslI CCNNNNNNNGG 2 cut(s) 47, 247
BsmAI GTCTC 2 cut(s) 139, 345
BsmBI CGTCTC 1 cut(s) 345
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 4 cut(s) 40, 188, 240, 266
Bso31I GGTCTC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 55
Bsp13I TCCGGA 1 cut(s) 220
Bsp143I GATC 1 cut(s) 256
Bsp1720I GCTNAGC 1 cut(s) 290
BspACI CCGC 4 cut(s) 41, 131, 241, 464
BspANI GGCC 4 cut(s) 40, 188, 240, 266
BspCNI CTCAG 4 cut(s) 60, 219, 303, 433
BspEI TCCGGA 1 cut(s) 220
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 139
BsrDI GCAATG 2 cut(s) 369, 437
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 234, 316
BstDEI CTNAG 5 cut(s) 68, 178, 206, 290, 420
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 2 cut(s) 79, 159
BstFNI CGCG 1 cut(s) 408
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 2 cut(s) 139, 345
BstMBI GATC 1 cut(s) 256
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 346
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 2 cut(s) 99, 436
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BstZI CGGCCG 1 cut(s) 238
BsuRI GGCC 4 cut(s) 40, 188, 240, 266
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 2 cut(s) 79, 159
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 3 cut(s) 153, 331, 342
Cfr13I GGNCC 2 cut(s) 76, 265
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CviAII CATG 3 cut(s) 64, 172, 184
DdeI CTNAG 5 cut(s) 68, 178, 206, 290, 420
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
EaeI YGGCCR 3 cut(s) 38, 186, 238
EagI CGGCCG 1 cut(s) 238
EciI GGCGGA 1 cut(s) 453
Ecl136II GAGCTC 1 cut(s) 53
EclXI CGGCCG 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 139
Eco32I GATATC 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 76
Eco52I CGGCCG 1 cut(s) 238
Eco53kI GAGCTC 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 346
EcoRV GATATC 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 3 cut(s) 67, 175, 187
FaiI YATR 5 cut(s) 65, 173, 185, 321, 475
FatI CATG 3 cut(s) 63, 171, 183
Fnu4HI GCNGC 4 cut(s) 41, 88, 241, 425
FokI GGATG 2 cut(s) 66, 146
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 4 cut(s) 41, 88, 241, 425
GluI GCNGC 4 cut(s) 41, 88, 241, 425
GsaI CCCAGC 1 cut(s) 383
GsuI CTGGAG 2 cut(s) 369, 384
HaeIII GGCC 4 cut(s) 40, 188, 240, 266
HapII CCGG 2 cut(s) 221, 237
Hin1II CATG 3 cut(s) 67, 175, 187
HpaII CCGG 2 cut(s) 221, 237
HphI GGTGA 3 cut(s) 222, 263, 294
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 4 cut(s) 196, 221, 260, 401
HpyAV CCTTC 5 cut(s) 101, 111, 117, 309, 376
HpyCH4III ACNGT 2 cut(s) 234, 316
HpyCH4V TGCA 1 cut(s) 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 5 cut(s) 68, 178, 206, 290, 420
Hsp92II CATG 3 cut(s) 67, 175, 187
Kpn2I TCCGGA 1 cut(s) 220
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 2 cut(s) 50, 58
LpnPI CCDG 8 cut(s) 234, 250, 281, 333, 337, 360, 393, 414
Lsp1109I GCAGC 2 cut(s) 99, 436
LweI GCATC 1 cut(s) 333
MaeIII GTNAC 1 cut(s) 228
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 2 cut(s) 184, 266
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 55
MlsI TGGCCA 1 cut(s) 188
MluI ACGCGT 1 cut(s) 406
MluNI TGGCCA 1 cut(s) 188
Mox20I TGGCCA 1 cut(s) 188
MroI TCCGGA 1 cut(s) 220
MscI TGGCCA 1 cut(s) 188
MslI CAYNNNNRTG 1 cut(s) 170
Msp20I TGGCCA 1 cut(s) 188
MspI CCGG 2 cut(s) 221, 237
MspR9I CCNGG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 12
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 1 cut(s) 380
NdeII GATC 1 cut(s) 256
NlaIII CATG 3 cut(s) 67, 175, 187
NlaIV GGNNCC 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 228
NspI RCATGY 1 cut(s) 67
PctI GAATGC 1 cut(s) 12
PkrI GCNGC 4 cut(s) 42, 89, 242, 426
Psp124BI GAGCTC 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 346
PspFI CCCAGC 1 cut(s) 379
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 203
PspPI GGNCC 2 cut(s) 76, 265
PsuI RGATCY 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 170
SacI GAGCTC 1 cut(s) 55
SatI GCNGC 4 cut(s) 41, 88, 241, 425
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 2 cut(s) 76, 265
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 1 cut(s) 55
SfaNI GCATC 1 cut(s) 333
SinI GGWCC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SsiI CCGC 4 cut(s) 41, 131, 241, 464
SstI GAGCTC 1 cut(s) 55
StyD4I CCNGG 1 cut(s) 346
TaaI ACNGT 2 cut(s) 234, 316
TaqI TCGA 1 cut(s) 195
TauI GCSGC 2 cut(s) 43, 243
TscAI CASTG 3 cut(s) 160, 331, 342
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 2 cut(s) 87, 424
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 2 cut(s) 358, 426
TspRI CASTG 3 cut(s) 160, 331, 342
VpaK11BI GGWCC 1 cut(s) 76
XceI RCATGY 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.