Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013942

Physical Location & Seq

Genomic Coordinates Forward (+)

27239519 .. 27240873

Gene Structure 1355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGGAAGAGCACCTTGTTGTGACAAAAATGGCCTCAAGAAAGGTCCGTGGACGCCGGAGGAGGATCAGAAGCTCATGGATTATATCCAGAAACATGGTTATGGCAACTGGAGAACCCTCCCAAAGAATGCAGGGCTACAAAGATGTGGGAAGAGCTGCCGTCTCCGGTGGACAAACTATCTCCGACCGGACATCAAACGAGGACGGTTTTCATTTGAAGAGGAGGAGACAATTGTTCAACTCCACATCATATTGGGCAACAAATGGTCTGCTATTGCTGCTCGTTTGCCTGGAAGAACCGACAACGAAATCAAGAACTACTGGAACACCCACATTAGGAAGAGACTTCTCCGAATGGGAATAGATCGATCTCTTACCCACAGTCCCCGTCTCGATCTTCTCGACTTCTCATCCATTCTCTTCAACTCATCTCATCACCACCACCAAATGAACAACTTTTCAAGGTTGCTTGGCCAACCAATTGGACTCAACCCAGAGCTACTAAGGCTAGCCACTTTAATCCAATCCCATAGAGAAAGCAACAGTAACCAAAATTTCGTTCTTCAAAATGCTCAAGAAAATGATTACCACCAAATTTGCAACCCCCAAATCCAAGTTCCGTACCCAAATGAAGCTGCACAAATCATGCAGCTGCAGCCCAATGTAGAGTACCCATCAAGCCTAAGTGATTTTAGGTCACAAATTTCTCAACTCAATGAGTGGCAAAGTAATGCGGGGACTTCAAATTTTACCGAAGAATATGTTGACTTACCAAGCTTTCCTTACTTTGGGTCTGAACAGAATCAAACTGTTTTGGATCTTTCGCCAGAGACTTCAAATATTCACTCCAACAACAGCAACCAGAACTTCAGTTTCACTTCGGTTTTCTCGACGCCTTCTTCAAGCCCGACGCCTATGAATTCGAATTCGACAACATATTTCAACAGCGGCACAGAGGACGAACGTGAAAGCTACTGTAGCAACATATTAAAGTTTGACATCCCAAGCATCTTGGATGTTAATGAATTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

345

Amino Acids

39.6

Weight (kDa)

6.26

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.5e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	2.2e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 114	9.9e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21440
fragaria_vesca	FvH4_3g03780
malus_domestica	MD05G1326500.v1.1 MD10G1304600.v1.1
prunus_persica	Prupe.4G035100_v2.0.a1
pyrus_communis	pycom05g30090 pycom10g25700
rosa_chinensis	RchiOBHm_Chr5g0006031
rosa_multiflora	Rmu_sc0004331.1_g000015
rosa_roxburghii	Rroxscaffold_1G00069940
rosa_rugosa	Rorug04G0419200 Rorug04G0419300
rosa_samantha	Rh5AG046900 Rh5BG045700 Rh5CG054400 Rh5DG045300
rosa_wichuraiana	Rw5G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	734, 948
AclWI	GGATC	2 cut(s)	72, 825
AcoI	YGGCCR	1 cut(s)	472
AcsI	RAATTY	7 cut(s)	553, 594, 702, 745, 919, 925, 1025
AcuI	CTGAAG	1 cut(s)	853
AcyI	GRCGYC	3 cut(s)	53, 893, 911
AfaI	GTAC	2 cut(s)	623, 671
AfiI	CCNNNNNNNGG	2 cut(s)	336, 788
AgsI	TTSAA	9 cut(s)	218, 239, 424, 462, 566, 744, 837, 903, 943
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	4 cut(s)	543, 575, 600, 632
AluBI	AGCT	7 cut(s)	73, 156, 499, 635, 652, 777, 972
AluI	AGCT	7 cut(s)	73, 156, 499, 635, 652, 777, 972
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	5 cut(s)	167, 221, 337, 395, 824
AlwI	GGATC	2 cut(s)	72, 825
AoxI	GGCC	2 cut(s)	31, 472
ApeKI	GCWGC	6 cut(s)	156, 278, 635, 649, 652, 655
ApoI	RAATTY	7 cut(s)	553, 594, 702, 745, 919, 925, 1025
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	428
AsuII	TTCGAA	1 cut(s)	923
AsuNHI	GCTAGC	1 cut(s)	508
AvaII	GGWCC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	6 cut(s)	143, 265, 622, 639, 661, 667
BccI	CCATC	1 cut(s)	682
BceAI	ACGGC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	5 cut(s)	167, 221, 337, 395, 824
BfaI	CTAG	1 cut(s)	509
BfmI	CTRYAG	2 cut(s)	653, 976
BisI	GCNGC	7 cut(s)	157, 279, 636, 650, 653, 656, 949
BlsI	GCNGC	7 cut(s)	158, 280, 637, 651, 654, 657, 950
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	1017
BmtI	GCTAGC	1 cut(s)	512
BpmI	CTGGAG	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	923
BpuEI	CTTGAG	2 cut(s)	20, 558
Bsa29I	ATCGAT	1 cut(s)	367
BsaHI	GRCGYC	3 cut(s)	53, 893, 911
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	2 cut(s)	165, 187
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 788
Bse1I	ACTGG	2 cut(s)	113, 326
BseBI	CCWGG	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	3 cut(s)	410, 999, 1021
BseLI	CCNNNNNNNGG	2 cut(s)	336, 788
BseNI	ACTGG	2 cut(s)	113, 326
BseRI	GAGGAG	3 cut(s)	74, 236, 239
BseXI	GCAGC	6 cut(s)	143, 265, 622, 639, 661, 667
BsgI	GTGCAG	1 cut(s)	621
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	33, 474
BshVI	ATCGAT	1 cut(s)	367
BsiEI	CGRYCG	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	3 cut(s)	56, 166, 188
BslFI	GGGAC	2 cut(s)	369, 751
BslI	CCNNNNNNNGG	2 cut(s)	336, 788
BsmAI	GTCTC	5 cut(s)	167, 221, 337, 395, 824
BsmBI	CGTCTC	2 cut(s)	167, 395
BsmFI	GGGAC	2 cut(s)	369, 751
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	33, 474
Bsp119I	TTCGAA	1 cut(s)	923
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	5 cut(s)	64, 364, 368, 394, 817
BspACI	CCGC	2 cut(s)	734, 948
BspANI	GGCC	2 cut(s)	33, 474
BspDI	ATCGAT	1 cut(s)	367
BspMAI	CTGCAG	1 cut(s)	657
BspOI	GCTAGC	1 cut(s)	512
BspPI	GGATC	2 cut(s)	72, 825
BspQI	GCTCTTC	1 cut(s)	146
BspT104I	TTCGAA	1 cut(s)	923
BsrI	ACTGG	2 cut(s)	113, 326
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	5 cut(s)	64, 364, 368, 394, 817
BssNI	GRCGYC	3 cut(s)	53, 893, 911
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	5 cut(s)	207, 383, 545, 811, 977
Bst6I	CTCTTC	4 cut(s)	146, 213, 335, 425
BstACI	GRCGYC	3 cut(s)	53, 893, 911
BstBI	TTCGAA	1 cut(s)	923
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	2 cut(s)	503, 683
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	3 cut(s)	410, 999, 1021
BstKTI	GATC	5 cut(s)	67, 367, 371, 397, 820
BstMAI	GTCTC	5 cut(s)	167, 221, 337, 395, 824
BstMBI	GATC	5 cut(s)	64, 364, 368, 394, 817
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 505, 655, 978
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	2 cut(s)	653, 976
BstV1I	GCAGC	6 cut(s)	143, 265, 622, 639, 661, 667
BstX2I	RGATCY	1 cut(s)	817
BstXI	CCANNNNNNTGG	2 cut(s)	95, 482
BstYI	RGATCY	1 cut(s)	817
Bsu15I	ATCGAT	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	33, 474
BsuTUI	ATCGAT	1 cut(s)	367
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	410, 999, 1021
Cac8I	GCNNGC	1 cut(s)	510
Cfr13I	GGNCC	1 cut(s)	44
ClaI	ATCGAT	1 cut(s)	367
CseI	GACGC	3 cut(s)	61, 901, 919
Csp6I	GTAC	2 cut(s)	622, 670
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	4 cut(s)	76, 95, 646, 1030
CviQI	GTAC	2 cut(s)	622, 670
DdeI	CTNAG	2 cut(s)	503, 683
DpnI	GATC	5 cut(s)	66, 366, 370, 396, 819
DpnII	GATC	5 cut(s)	64, 364, 368, 394, 817
EaeI	YGGCCR	1 cut(s)	472
Eam1104I	CTCTTC	4 cut(s)	146, 213, 335, 425
EarI	CTCTTC	4 cut(s)	146, 213, 335, 425
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	853
EcoRI	GAATTC	3 cut(s)	919, 925, 1025
EcoRII	CCWGG	1 cut(s)	289
Esp3I	CGTCTC	2 cut(s)	167, 395
FaeI	CATG	4 cut(s)	79, 98, 649, 1033
FalI	AAGNNNNNCTT	3 cut(s)	30, 766, 798
FaqI	GGGAC	2 cut(s)	369, 751
FatI	CATG	4 cut(s)	75, 94, 645, 1029
FauI	CCCGC	1 cut(s)	727
Fnu4HI	GCNGC	7 cut(s)	157, 279, 636, 650, 653, 656, 949
FokI	GGATG	3 cut(s)	397, 986, 1028
Fsp4HI	GCNGC	7 cut(s)	157, 279, 636, 650, 653, 656, 949
FspBI	CTAG	1 cut(s)	509
GluI	GCNGC	7 cut(s)	157, 279, 636, 650, 653, 656, 949
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	33, 474
HapII	CCGG	3 cut(s)	56, 166, 188
HgaI	GACGC	3 cut(s)	61, 901, 919
Hin1I	GRCGYC	3 cut(s)	53, 893, 911
Hin1II	CATG	4 cut(s)	79, 98, 649, 1033
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HindIII	AAGCTT	1 cut(s)	775
HinfI	GANTC	2 cut(s)	486, 802
HpaII	CCGG	3 cut(s)	56, 166, 188
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	3 cut(s)	51, 171, 766
Hpy188I	TCNGA	4 cut(s)	69, 185, 353, 796
Hpy188III	TCNNGA	7 cut(s)	37, 88, 313, 392, 401, 575, 889
Hpy8I	GTNNAC	3 cut(s)	51, 171, 766
Hpy99I	CGWCG	2 cut(s)	895, 913
HpyAV	CCTTC	1 cut(s)	906
HpyCH4III	ACNGT	5 cut(s)	207, 383, 545, 811, 977
HpyCH4IV	ACGT	1 cut(s)	964
HpyCH4V	TGCA	5 cut(s)	131, 600, 638, 649, 655
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 505, 655, 978
HpyF3I	CTNAG	2 cut(s)	503, 683
HpySE526I	ACGT	1 cut(s)	964
Hsp92I	GRCGYC	3 cut(s)	53, 893, 911
Hsp92II	CATG	4 cut(s)	79, 98, 649, 1033
Kzo9I	GATC	5 cut(s)	64, 364, 368, 394, 817
LguI	GCTCTTC	1 cut(s)	146
Lsp1109I	GCAGC	6 cut(s)	143, 265, 622, 639, 661, 667
LweI	GCATC	1 cut(s)	1017
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	964
MaeIII	GTNAC	3 cut(s)	20, 545, 696
MalI	GATC	5 cut(s)	66, 366, 370, 396, 819
MboI	GATC	5 cut(s)	64, 364, 368, 394, 817
MfeI	CAATTG	2 cut(s)	231, 480
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	1 cut(s)	13
MlsI	TGGCCA	1 cut(s)	474
MluCI	AATT	9 cut(s)	231, 480, 553, 594, 702, 745, 919, 925, 1025
MluNI	TGGCCA	1 cut(s)	474
MlyI	GAGTC	1 cut(s)	480
MmeI	TCCRAC	2 cut(s)	208, 873
MnlI	CCTC	8 cut(s)	44, 52, 55, 128, 194, 214, 217, 949
Mox20I	TGGCCA	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	474
MseI	TTAA	3 cut(s)	518, 989, 1020
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	474
MspA1I	CMGCKG	2 cut(s)	652, 948
MspI	CCGG	3 cut(s)	56, 166, 188
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	2 cut(s)	231, 480
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	4 cut(s)	278, 505, 655, 978
NdeII	GATC	5 cut(s)	64, 364, 368, 394, 817
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	4 cut(s)	79, 98, 649, 1033
NmuCI	GTSAC	2 cut(s)	20, 696
NspV	TTCGAA	1 cut(s)	923
PciSI	GCTCTTC	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	2 cut(s)	399, 887
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	802
PkrI	GCNGC	7 cut(s)	158, 280, 637, 651, 654, 657, 950
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	657
PsuI	RGATCY	1 cut(s)	817
PvuII	CAGCTG	1 cut(s)	652
RsaI	GTAC	2 cut(s)	623, 671
RsaNI	GTAC	2 cut(s)	622, 670
RseI	CAYNNNNRTG	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	3 cut(s)	518, 989, 1020
SatI	GCNGC	7 cut(s)	157, 279, 636, 650, 653, 656, 949
Sau3AI	GATC	5 cut(s)	64, 364, 368, 394, 817
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	480
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	1 cut(s)	1017
SfcI	CTRYAG	2 cut(s)	653, 976
SfuI	TTCGAA	1 cut(s)	923
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	35, 573
SmoI	CTYRAG	2 cut(s)	35, 573
Sse9I	AATT	9 cut(s)	231, 480, 553, 594, 702, 745, 919, 925, 1025
SsiI	CCGC	2 cut(s)	734, 948
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	5 cut(s)	207, 383, 545, 811, 977
TaiI	ACGT	1 cut(s)	967
TaqI	TCGA	6 cut(s)	367, 393, 402, 890, 923, 929
TasI	AATT	9 cut(s)	231, 480, 553, 594, 702, 745, 919, 925, 1025
TauI	GCSGC	1 cut(s)	951
TfiI	GAWTC	1 cut(s)	802
Tru1I	TTAA	3 cut(s)	518, 989, 1020
Tru9I	TTAA	3 cut(s)	518, 989, 1020
TseFI	GTSAC	2 cut(s)	20, 696
TseI	GCWGC	6 cut(s)	156, 278, 635, 649, 652, 655
Tsp45I	GTSAC	2 cut(s)	20, 696
TspDTI	ATGAA	5 cut(s)	201, 464, 645, 932, 1018
TspGWI	ACGGA	2 cut(s)	36, 609
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	7 cut(s)	553, 594, 702, 745, 919, 925, 1025
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.