pycom110g00040

Thioredoxin-related transmembrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000110
OG0010484
Physical Location & Seq
Reverse (-)
36742 .. 38057
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 414 bp
ATGACAATGCCGGTGTTTACGATCAAATTCCACTTTTTGTATACACCTATTTCTACGCGGGGTAATTTGTTTGTTCTGTTTTCAGATTTTTCTTATCGGTCTCACTTTAATTCTGGACCGCCACTTGACTCTCTGGTATGTTGTGGTGTTTACAGGTGGGTATATCTTCAAATTCCCTTTCTTTTTTCTGTACTTGCAGGGAGCATGGGACAACTTCCTACCTATGTCTTATTCACGAATGGAGCTGAAGTTGCACGCTATCCACAACTAGAATCTCAAGCAAAAGCATTTCGTGATCCCATAACTAAGGTACCGGGACAAATTATATTGCCTAGACCGCAGTCAATTTTCCTGTTTTCCGTTATTTCTAATTGCAACCACCTTATTCTTCCCTTCCATATCCAACATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.61

Weight (kDa)

9.18

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 310
AccI GTMKAC 1 cut(s) 41
AccII CGCG 1 cut(s) 58
AciI CCGC 3 cut(s) 58, 119, 338
AclWI GGATC 1 cut(s) 290
AcsI RAATTY 2 cut(s) 26, 171
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 2 cut(s) 192, 312
AgsI TTSAA 1 cut(s) 170
AluBI AGCT 2 cut(s) 245, 411
AluI AGCT 2 cut(s) 245, 411
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 290
ApoI RAATTY 2 cut(s) 26, 171
Asp718I GGTACC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 116
AsuC2I CCSGG 1 cut(s) 315
AvaII GGWCC 1 cut(s) 116
BaeI ACNNNNGTAYC 2 cut(s) 294, 327
BanI GGYRCC 1 cut(s) 310
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 3 cut(s) 269, 333, 412
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 315
BoxI GACNNNNGTC 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bse118I RCCGGY 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 58
BshNI GGYRCC 1 cut(s) 310
BsiSI CCGG 2 cut(s) 11, 314
BslFI GGGAC 2 cut(s) 222, 330
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 2 cut(s) 222, 330
Bso31I GGTCTC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 21, 295
BspACI CCGC 3 cut(s) 58, 119, 338
BspFNI CGCG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 312
BspPI GGATC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 310
BspTNI GGTCTC 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 10
BssMI GATC 2 cut(s) 21, 295
BssNAI GTATAC 1 cut(s) 42
Bst1107I GTATAC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 1 cut(s) 306
BstFNI CGCG 1 cut(s) 58
BstKTI GATC 2 cut(s) 24, 298
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 2 cut(s) 21, 295
BstMWI GCNNNNNNNGC 2 cut(s) 251, 337
BstPAI GACNNNNGTC 1 cut(s) 340
BstSCI CCNGG 1 cut(s) 313
BstUI CGCG 1 cut(s) 58
BstZ17I GTATAC 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 256
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 2 cut(s) 191, 311
CviAII CATG 1 cut(s) 205
CviJI RGCY 2 cut(s) 245, 411
CviKI_1 RGCY 2 cut(s) 245, 411
CviQI GTAC 2 cut(s) 191, 311
DdeI CTNAG 1 cut(s) 306
DpnI GATC 2 cut(s) 23, 297
DpnII GATC 2 cut(s) 21, 295
Eco31I GGTCTC 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 267
FaeI CATG 1 cut(s) 208
FaiI YATR 9 cut(s) 42, 139, 163, 206, 225, 302, 326, 399, 408
FaqI GGGAC 2 cut(s) 222, 330
FatI CATG 1 cut(s) 204
FauI CCCGC 1 cut(s) 51
FblI GTMKAC 1 cut(s) 41
FspBI CTAG 3 cut(s) 269, 333, 412
HapII CCGG 2 cut(s) 11, 314
Hin1II CATG 1 cut(s) 208
HinfI GANTC 2 cut(s) 128, 272
HpaII CCGG 2 cut(s) 11, 314
Hpy166II GTNNAC 3 cut(s) 18, 42, 151
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 3 cut(s) 114, 235, 293
Hpy8I GTNNAC 3 cut(s) 18, 42, 151
HpyAV CCTTC 1 cut(s) 403
HpyCH4V TGCA 3 cut(s) 197, 254, 375
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 337
HpyF3I CTNAG 1 cut(s) 306
Hsp92II CATG 1 cut(s) 208
KpnI GGTACC 1 cut(s) 314
Kzo9I GATC 2 cut(s) 21, 295
LmnI GCTCC 2 cut(s) 201, 242
LpnPI CCDG 7 cut(s) 24, 99, 119, 139, 183, 327, 365
MaeI CTAG 3 cut(s) 269, 333, 412
MalI GATC 2 cut(s) 23, 297
MboI GATC 2 cut(s) 21, 295
MboII GAAGA 2 cut(s) 158, 380
MluCI AATT 7 cut(s) 26, 64, 109, 171, 321, 345, 370
MlyI GAGTC 1 cut(s) 122
MseI TTAA 1 cut(s) 108
MspI CCGG 2 cut(s) 11, 314
MspR9I CCNGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 2 cut(s) 251, 337
NciI CCSGG 1 cut(s) 315
NdeII GATC 2 cut(s) 21, 295
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 272
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PshAI GACNNNNGTC 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 1 cut(s) 116
RsaI GTAC 2 cut(s) 192, 312
RsaNI GTAC 2 cut(s) 191, 311
SaqAI TTAA 1 cut(s) 108
Sau3AI GATC 2 cut(s) 21, 295
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 315
SetI ASST 7 cut(s) 49, 158, 224, 247, 312, 384, 413
SinI GGWCC 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
Sse9I AATT 7 cut(s) 26, 64, 109, 171, 321, 345, 370
SsiI CCGC 3 cut(s) 58, 119, 338
SspMI CTAG 3 cut(s) 269, 333, 412
StyD4I CCNGG 1 cut(s) 313
TaqII GACCGA 1 cut(s) 87
TasI AATT 7 cut(s) 26, 64, 109, 171, 321, 345, 370
TatI WGTACW 1 cut(s) 190
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TspGWI ACGGA 1 cut(s) 349
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 2 cut(s) 26, 171
XmiI GTMKAC 1 cut(s) 41
XspI CTAG 3 cut(s) 269, 333, 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.