Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0004938

Physical Location & Seq

Genomic Coordinates Reverse (-)

218593 .. 220062

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00270.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGTGACCGCGTTGCATTTTTCCGGAGTTAAAACTCTGTGCCCTGCATCCTCAGAAAGATCTTTGCAATTCAATCAACCACTTTTGTCACAAAGTCTTGGTTTCGCAACTTGTGTCGCTTCCAGCAATGGATTCTATGCAAGTGCGAAAGACTTTTCTTGTACGAGCAGGGTTTTGAGAGTCAGTTGCGAGAGAGGGATTGCAGATGTTCTTGAAAAGAAACGGACTGACAATCAAAGCCTAGGCGAGAATGAGAAACAATTGACGTGCGTTATGAAGTTTGGTGGCTCCTCGGTGGCTTCTGCAGAGAGAATGAGGGAGGTTGCTGATCTTATACTCAGCTTCCCACAAGAGAGGCCTGTCATTGTTCTTTCTGCCATGGGAAAGACAACTAACAAACTCCTACTGGCAGGAGAAAAGGCCGTCACTTGCGGTGTTACCAATGTATCTATGATTGATGAGTTGAGCTTCATAAAAGAATTACATCTCAGGACTGTGGAAGAACTTGGAGTGGACAGCTCCATCATTTCATCACACCTCAAAGAACTGGAACAACTTCTGAAGGGAATTGCTATGATGAAAGAGTTGACTTTACGAACCAAAGACTATCTGGTTTCATTTGGGGAATGCATGTCCACGCGGCTTTTTGTTGCCTATCTGAATAAGATTGGCGTTAAAGCCCGCCAATATGATGCCTTCGAAATTGGGTTTATAACCACAGATGACTTCACAAATGCGGACATTTTGGAGGCAACTTATCCGGCTGTCGCAAAGAGGTTACATGGTGATTGGATATGTGATCCTGCTATTCCAGTTGTTACTGGTTTCCTTGGAAAGGGATGGATCGATCATGTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

287

Amino Acids

31.39

Weight (kDa)

6.24

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02020 AT5G14060 AT5G14060 AT5G14060
fragaria_vesca	FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240
malus_domestica	MD09G1003700.v1.1 MD17G1007300.v1.1
prunus_persica	Prupe.3G312900_v2.0.a1 Prupe.3G312900_v2.0.a1
pyrus_communis	pycom111g00270 pycom17g00290
rosa_chinensis	RchiOBHm_Chr2g0176441
rosa_laevigata	RLG00000022413
rosa_multiflora	Rmu_co8048038.1_g000001 Rmu_sc0009140.1_g000011
rosa_roxburghii	Rroxscaffold_2G00076440
rosa_rugosa	Rorug02G0594300 Rorug02G0594400 Rorug02G0594500 Rorug02G0594600
rosa_samantha	Rh2BG684300 Rh2CG647100 Rh2DG697900
rosa_wichuraiana	Rw2G055190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	713
AccII	CGCG	2 cut(s)	11, 640
AccIII	TCCGGA	1 cut(s)	23
AciI	CCGC	5 cut(s)	9, 432, 640, 682, 737
AclWI	GGATC	2 cut(s)	794, 851
AcuI	CTGAAG	1 cut(s)	581
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	835
AgsI	TTSAA	2 cut(s)	73, 215
AjiI	CACGTC	1 cut(s)	267
AluBI	AGCT	3 cut(s)	342, 468, 519
AluI	AGCT	3 cut(s)	342, 468, 519
AlwI	GGATC	2 cut(s)	794, 851
Aor13HI	TCCGGA	1 cut(s)	23
AoxI	GGCC	2 cut(s)	356, 420
Asp700I	GAANNNNTTC	1 cut(s)	555
AspA2I	CCTAGG	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	16, 797
AsuII	TTCGAA	1 cut(s)	699
AvrII	CCTAGG	1 cut(s)	241
BaeGI	GKGCMC	1 cut(s)	44
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BccI	CCATC	2 cut(s)	530, 834
BceAI	ACGGC	1 cut(s)	407
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	303
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	1 cut(s)	641
BlnI	CCTAGG	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	642
BmgBI	CACGTC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	289
BmsI	GCATC	2 cut(s)	56, 682
Bpu14I	TTCGAA	1 cut(s)	699
Bsa29I	ATCGAT	1 cut(s)	846
BsaJI	CCNNGG	4 cut(s)	241, 291, 378, 829
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	835
Bse1I	ACTGG	4 cut(s)	411, 552, 812, 826
Bse3DI	GCAATG	1 cut(s)	133
BseAI	TCCGGA	1 cut(s)	23
BseCI	ATCGAT	1 cut(s)	846
BseDI	CCNNGG	4 cut(s)	241, 291, 378, 829
BseGI	GGATG	2 cut(s)	47, 845
BseLI	CCNNNNNNNGG	1 cut(s)	835
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	3 cut(s)	66, 352, 502
BseNI	ACTGG	4 cut(s)	411, 552, 812, 826
BseRI	GAGGAG	1 cut(s)	280
BseSI	GKGCMC	1 cut(s)	44
Bsh1236I	CGCG	2 cut(s)	11, 640
BshFI	GGCC	2 cut(s)	358, 422
BshVI	ATCGAT	1 cut(s)	846
BsiSI	CCGG	2 cut(s)	24, 761
BslI	CCNNNNNNNGG	1 cut(s)	835
BsmI	GAATGC	1 cut(s)	632
BsnI	GGCC	2 cut(s)	358, 422
Bsp119I	TTCGAA	1 cut(s)	699
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp13I	TCCGGA	1 cut(s)	23
Bsp143I	GATC	5 cut(s)	59, 328, 799, 843, 847
Bsp19I	CCATGG	1 cut(s)	378
BspACI	CCGC	5 cut(s)	9, 432, 640, 682, 737
BspANI	GGCC	2 cut(s)	358, 422
BspCNI	CTCAG	3 cut(s)	65, 351, 501
BspDI	ATCGAT	1 cut(s)	846
BspEI	TCCGGA	1 cut(s)	23
BspFNI	CGCG	2 cut(s)	11, 640
BspLI	GGNNCC	1 cut(s)	289
BspMAI	CTGCAG	1 cut(s)	307
BspPI	GGATC	2 cut(s)	794, 851
BspT104I	TTCGAA	1 cut(s)	699
BsrDI	GCAATG	1 cut(s)	133
BsrI	ACTGG	4 cut(s)	411, 552, 812, 826
BssECI	CCNNGG	4 cut(s)	241, 291, 378, 829
BssMI	GATC	5 cut(s)	59, 328, 799, 843, 847
BssT1I	CCWWGG	3 cut(s)	241, 378, 829
Bst4CI	ACNGT	1 cut(s)	496
BstBI	TTCGAA	1 cut(s)	699
BstC8I	GCNNGC	1 cut(s)	682
BstDEI	CTNAG	3 cut(s)	52, 338, 488
BstDSI	CCRYGG	1 cut(s)	378
BstEII	GGTNACC	1 cut(s)	4
BstENI	CCTNNNNNAGG	1 cut(s)	833
BstF5I	GGATG	2 cut(s)	47, 845
BstFNI	CGCG	2 cut(s)	11, 640
BstKTI	GATC	5 cut(s)	62, 331, 802, 846, 850
BstMBI	GATC	5 cut(s)	59, 328, 799, 843, 847
BstNSI	RCATGY	1 cut(s)	634
BstPI	GGTNACC	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	2 cut(s)	11, 640
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
Bsu15I	ATCGAT	1 cut(s)	846
BsuRI	GGCC	2 cut(s)	358, 422
BsuTUI	ATCGAT	1 cut(s)	846
BtgI	CCRYGG	1 cut(s)	378
BtrI	CACGTC	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	47, 845
Cac8I	GCNNGC	1 cut(s)	682
ClaI	ATCGAT	1 cut(s)	846
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	4 cut(s)	379, 631, 782, 851
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	3 cut(s)	52, 338, 488
DpnI	GATC	5 cut(s)	61, 330, 801, 845, 849
DpnII	GATC	5 cut(s)	59, 328, 799, 843, 847
Eco130I	CCWWGG	3 cut(s)	241, 378, 829
Eco147I	AGGCCT	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	581
Eco91I	GGTNACC	1 cut(s)	4
EcoNI	CCTNNNNNAGG	1 cut(s)	833
EcoO65I	GGTNACC	1 cut(s)	4
EcoT14I	CCWWGG	3 cut(s)	241, 378, 829
EcoT22I	ATGCAT	1 cut(s)	632
ErhI	CCWWGG	3 cut(s)	241, 378, 829
FaeI	CATG	4 cut(s)	382, 634, 785, 854
FatI	CATG	4 cut(s)	378, 630, 781, 850
FauI	CCCGC	1 cut(s)	689
Fnu4HI	GCNGC	1 cut(s)	641
FokI	GGATG	2 cut(s)	34, 852
Fsp4HI	GCNGC	1 cut(s)	641
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	1 cut(s)	641
HaeIII	GGCC	2 cut(s)	358, 422
HapII	CCGG	2 cut(s)	24, 761
Hin1II	CATG	4 cut(s)	382, 634, 785, 854
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HinfI	GANTC	2 cut(s)	132, 180
HpaII	CCGG	2 cut(s)	24, 761
HphI	GGTGA	2 cut(s)	16, 797
Hpy166II	GTNNAC	3 cut(s)	514, 588, 636
Hpy188I	TCNGA	3 cut(s)	55, 561, 660
Hpy188III	TCNNGA	3 cut(s)	24, 212, 490
Hpy8I	GTNNAC	3 cut(s)	514, 588, 636
HpyAV	CCTTC	2 cut(s)	556, 706
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	7 cut(s)	16, 47, 67, 140, 203, 305, 630
HpyF3I	CTNAG	3 cut(s)	52, 338, 488
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	4 cut(s)	382, 634, 785, 854
Kpn2I	TCCGGA	1 cut(s)	23
Kzo9I	GATC	5 cut(s)	59, 328, 799, 843, 847
LmnI	GCTCC	2 cut(s)	293, 524
LweI	GCATC	2 cut(s)	56, 682
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	6 cut(s)	4, 87, 424, 436, 777, 817
MalI	GATC	5 cut(s)	61, 330, 801, 845, 849
MboI	GATC	5 cut(s)	59, 328, 799, 843, 847
MboII	GAAGA	1 cut(s)	512
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	5 cut(s)	68, 260, 479, 567, 702
MlyI	GAGTC	1 cut(s)	189
MnlI	CCTC	9 cut(s)	61, 188, 301, 309, 313, 348, 548, 742, 768
Mph1103I	ATGCAT	1 cut(s)	632
MroI	TCCGGA	1 cut(s)	23
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	2 cut(s)	30, 675
MspI	CCGG	2 cut(s)	24, 761
MunI	CAATTG	1 cut(s)	260
Mva1269I	GAATGC	1 cut(s)	632
MvnI	CGCG	2 cut(s)	11, 640
NcoI	CCATGG	1 cut(s)	378
NdeII	GATC	5 cut(s)	59, 328, 799, 843, 847
NlaIII	CATG	4 cut(s)	382, 634, 785, 854
NlaIV	GGNNCC	1 cut(s)	289
NmuCI	GTSAC	3 cut(s)	4, 87, 424
NsiI	ATGCAT	1 cut(s)	632
NspI	RCATGY	1 cut(s)	634
NspV	TTCGAA	1 cut(s)	699
PceI	AGGCCT	1 cut(s)	358
PctI	GAATGC	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	642
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PsiI	TTATAA	1 cut(s)	713
PspEI	GGTNACC	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	289
PstI	CTGCAG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	30, 675
SatI	GCNGC	1 cut(s)	641
Sau3AI	GATC	5 cut(s)	59, 328, 799, 843, 847
SchI	GAGTC	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	7 cut(s)	269, 324, 344, 470, 521, 540, 779
SfaNI	GCATC	2 cut(s)	56, 682
SfcI	CTRYAG	1 cut(s)	303
SfuI	TTCGAA	1 cut(s)	699
Sse9I	AATT	5 cut(s)	68, 260, 479, 567, 702
SseBI	AGGCCT	1 cut(s)	358
SsiI	CCGC	5 cut(s)	9, 432, 640, 682, 737
SspMI	CTAG	1 cut(s)	242
StuI	AGGCCT	1 cut(s)	358
StyI	CCWWGG	3 cut(s)	241, 378, 829
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	2 cut(s)	699, 846
TasI	AATT	5 cut(s)	68, 260, 479, 567, 702
TauI	GCSGC	1 cut(s)	643
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	2 cut(s)	30, 675
Tru9I	TTAA	2 cut(s)	30, 675
TseFI	GTSAC	3 cut(s)	4, 87, 424
Tsp45I	GTSAC	3 cut(s)	4, 87, 424
TspDTI	ATGAA	5 cut(s)	290, 460, 519, 593, 606
TspGWI	ACGGA	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	833
XceI	RCATGY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	607
XmaJI	CCTAGG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	1 cut(s)	242
Zsp2I	ATGCAT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.