Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004938

Physical Location & Seq

Genomic Coordinates Forward (+)

71633159 .. 71635477

Gene Structure 2319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0594500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGCGTGTGCGGCAACTCCAAGTTAAATGTGAAACTAAGACTAAGGATAATGTGTTTGTCAATGTGGTTGCATCGATTCAATTCCGTGCCTTACCAGAGAAAGTAGGGGATGCTTTCTACAAGCTCACTAACACCACTGCTCAGATTCAGGCCTATGTTTTCGATGTTATCAGGGCAAGTGTACCCAAATTGGAGTTGGATGCTGTGTTTGAACAGAAGAGTGACATAGCAAAAGCTGTTGAAGAGGAGCTTGAAAAGGCAATGTCTGCTTATGGTTTTGAAATCGTCGAGACTCTCATTGTTGATATTGTGCCTGATGATCGTGTGAAGAAAGCAATGAATGAGATCAATGCAGTTGATCATGCCTTCCCCAATCAACTTGAATATGTATGGCTCTGGAGTTGGCAGATGAAGACACCACTACTAAAAGGCATACTTGTGTTATATCTTTACTTTGTTCATAGTTCTCATGTTTCTACCCCTGTGAATGCTAGAAATGTTAACTCAAACACCAAGGCAGAGAAAGTGAAGGAGGAAGCAGACTGGAATCATTCTTCTGCTGCTAAACTAAAACGCAAAGTCTTTGTTGGAGGACTTCCTCTTTCAGTGGACTCTGATGCTTTGGGAAAGCTCTGTGAAAAAGAGTTTGAATCGGTGGAAGATGCTATAGTTATTGTAACTCGAATTGAAAACAAGATACAATCTCGAGGCTTTGGATTTGTCACATTTAGAGAGGAGAAATCTGCTTCAGAAGCCATACAAGCGCACTACATCACCATGAGAGGCAAGAAAGTTGAAATAAAAAATTTGACTCCAAAATTGGTTTTGGGAGCTGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

280

Amino Acids

31.6

Weight (kDa)

6.98

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	2 - 115	8.9e-15	SPFH domain / Band 7 family
RRM_1	PF00076	194 - 265	3.4e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02020 AT5G14060 AT5G14060 AT5G14060
fragaria_vesca	FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240
malus_domestica	MD09G1003700.v1.1 MD17G1007300.v1.1
prunus_persica	Prupe.3G312900_v2.0.a1 Prupe.3G312900_v2.0.a1
pyrus_communis	pycom111g00270 pycom17g00290
rosa_chinensis	RchiOBHm_Chr2g0176441
rosa_laevigata	RLG00000022413
rosa_multiflora	Rmu_co8048038.1_g000001 Rmu_sc0009140.1_g000011
rosa_roxburghii	Rroxscaffold_2G00076440
rosa_rugosa	Rorug02G0594300 Rorug02G0594400 Rorug02G0594500 Rorug02G0594600
rosa_samantha	Rh2BG684300 Rh2CG647100 Rh2DG697900
rosa_wichuraiana	Rw2G055190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	805
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	1 cut(s)	183
AgsI	TTSAA	9 cut(s)	80, 212, 242, 254, 281, 383, 650, 689, 797
AluBI	AGCT	5 cut(s)	124, 236, 250, 631, 833
AluI	AGCT	5 cut(s)	124, 236, 250, 631, 833
Alw26I	GTCTC	1 cut(s)	284
Ama87I	CYCGRG	1 cut(s)	705
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	1 cut(s)	805
AspLEI	GCGC	1 cut(s)	766
AsuHPI	GGTGA	1 cut(s)	766
AvaI	CYCGRG	1 cut(s)	705
BbsI	GAAGAC	1 cut(s)	419
BbvCI	CCTCAGC	1 cut(s)	834
BbvI	GCAGC	1 cut(s)	547
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	1 cut(s)	666
BisI	GCNGC	2 cut(s)	11, 561
BlsI	GCNGC	2 cut(s)	12, 562
BmeT110I	CYCGRG	1 cut(s)	705
BmsI	GCATC	5 cut(s)	80, 100, 190, 607, 652
BpiI	GAAGAC	1 cut(s)	419
BpmI	CTGGAG	1 cut(s)	418
Bpu10I	CCTNAGC	1 cut(s)	834
Bsa29I	ATCGAT	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	513
Bse1I	ACTGG	1 cut(s)	548
Bse3DI	GCAATG	2 cut(s)	267, 342
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	2 cut(s)	115, 205
BseMI	GCAATG	2 cut(s)	267, 342
BseMII	CTCAG	2 cut(s)	155, 825
BseNI	ACTGG	1 cut(s)	548
BseRI	GAGGAG	2 cut(s)	260, 749
BseXI	GCAGC	1 cut(s)	547
BshFI	GGCC	1 cut(s)	152
BshVI	ATCGAT	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	705
BsmAI	GTCTC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	705
Bsp143I	GATC	3 cut(s)	319, 345, 358
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	154, 826
BspDI	ATCGAT	1 cut(s)	74
BsrDI	GCAATG	2 cut(s)	267, 342
BsrI	ACTGG	1 cut(s)	548
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	3 cut(s)	319, 345, 358
BssT1I	CCWWGG	1 cut(s)	513
Bst6I	CTCTTC	2 cut(s)	212, 237
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstDEI	CTNAG	4 cut(s)	36, 42, 141, 834
BstF5I	GGATG	2 cut(s)	115, 205
BstHHI	GCGC	1 cut(s)	766
BstKTI	GATC	3 cut(s)	322, 348, 361
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	3 cut(s)	319, 345, 358
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 266, 752, 761
BstSFI	CTRYAG	1 cut(s)	666
BstV1I	GCAGC	1 cut(s)	547
BstV2I	GAAGAC	1 cut(s)	419
Bsu15I	ATCGAT	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	152
BsuTUI	ATCGAT	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	115, 205
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	135, 612
CfoI	GCGC	1 cut(s)	766
ClaI	ATCGAT	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	3 cut(s)	362, 470, 778
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	4 cut(s)	36, 42, 141, 834
DpnI	GATC	3 cut(s)	321, 347, 360
DpnII	GATC	3 cut(s)	319, 345, 358
Eam1104I	CTCTTC	2 cut(s)	212, 237
EarI	CTCTTC	2 cut(s)	212, 237
Eco130I	CCWWGG	1 cut(s)	513
Eco147I	AGGCCT	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	732
Eco88I	CYCGRG	1 cut(s)	705
EcoT14I	CCWWGG	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	3 cut(s)	365, 473, 781
FalI	AAGNNNNNCTT	4 cut(s)	234, 266, 420, 452
FatI	CATG	3 cut(s)	361, 469, 777
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	11, 561
FokI	GGATG	2 cut(s)	122, 212
Fsp4HI	GCNGC	2 cut(s)	11, 561
FspBI	CTAG	1 cut(s)	492
GlaI	GCGC	1 cut(s)	765
GluI	GCNGC	2 cut(s)	11, 561
GsuI	CTGGAG	1 cut(s)	418
HaeIII	GGCC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	766
Hin1II	CATG	3 cut(s)	365, 473, 781
Hin6I	GCGC	1 cut(s)	764
HinP1I	GCGC	1 cut(s)	764
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	7 cut(s)	76, 145, 292, 547, 611, 650, 811
HpaI	GTTAAC	1 cut(s)	502
HphI	GGTGA	1 cut(s)	766
Hpy166II	GTNNAC	3 cut(s)	182, 502, 610
Hpy188I	TCNGA	3 cut(s)	144, 616, 751
Hpy188III	TCNNGA	3 cut(s)	289, 397, 705
Hpy8I	GTNNAC	3 cut(s)	182, 502, 610
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	376, 523
HpyCH4V	TGCA	2 cut(s)	71, 353
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 266, 752, 761
HpyF3I	CTNAG	4 cut(s)	36, 42, 141, 834
Hsp92II	CATG	3 cut(s)	365, 473, 781
HspAI	GCGC	1 cut(s)	764
Ksp22I	TGATCA	1 cut(s)	358
KspAI	GTTAAC	1 cut(s)	502
Kzo9I	GATC	3 cut(s)	319, 345, 358
LmnI	GCTCC	2 cut(s)	247, 830
LpnPI	CCDG	7 cut(s)	108, 134, 157, 327, 382, 495, 529
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	5 cut(s)	80, 100, 190, 607, 652
MaeI	CTAG	1 cut(s)	492
MaeIII	GTNAC	3 cut(s)	221, 676, 721
MalI	GATC	3 cut(s)	321, 347, 360
MboI	GATC	3 cut(s)	319, 345, 358
MboII	GAAGA	6 cut(s)	229, 254, 340, 424, 546, 671
MluCI	AATT	5 cut(s)	80, 188, 684, 805, 818
MlyI	GAGTC	3 cut(s)	286, 605, 805
MmeI	TCCRAC	2 cut(s)	177, 568
MnlI	CCTC	8 cut(s)	238, 526, 584, 609, 701, 727, 776, 829
MseI	TTAA	2 cut(s)	24, 501
MslI	CAYNNNNRTG	2 cut(s)	437, 776
Mva1269I	GAATGC	1 cut(s)	493
MwoI	GCNNNNNNNGC	4 cut(s)	10, 266, 752, 761
NdeII	GATC	3 cut(s)	319, 345, 358
NlaIII	CATG	3 cut(s)	365, 473, 781
NmuCI	GTSAC	2 cut(s)	221, 721
PaeR7I	CTCGAG	1 cut(s)	705
PceI	AGGCCT	1 cut(s)	152
PctI	GAATGC	1 cut(s)	493
PfeI	GAWTC	4 cut(s)	76, 145, 547, 650
PkrI	GCNGC	2 cut(s)	12, 562
PleI	GAGTC	3 cut(s)	286, 605, 805
PpsI	GAGTC	3 cut(s)	286, 605, 805
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
RseI	CAYNNNNRTG	2 cut(s)	437, 776
SaqAI	TTAA	2 cut(s)	24, 501
SatI	GCNGC	2 cut(s)	11, 561
Sau3AI	GATC	3 cut(s)	319, 345, 358
SchI	GAGTC	3 cut(s)	286, 605, 805
SetI	ASST	5 cut(s)	126, 238, 252, 633, 835
SfaNI	GCATC	5 cut(s)	80, 100, 190, 607, 652
SfcI	CTRYAG	1 cut(s)	666
Sfr274I	CTCGAG	1 cut(s)	705
SlaI	CTCGAG	1 cut(s)	705
SmiMI	CAYNNNNRTG	2 cut(s)	437, 776
SmlI	CTYRAG	1 cut(s)	705
SmoI	CTYRAG	1 cut(s)	705
Sse9I	AATT	5 cut(s)	80, 188, 684, 805, 818
SseBI	AGGCCT	1 cut(s)	152
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	492
StuI	AGGCCT	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	513
TaqI	TCGA	5 cut(s)	74, 162, 288, 682, 706
TasI	AATT	5 cut(s)	80, 188, 684, 805, 818
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	4 cut(s)	76, 145, 547, 650
Tru1I	TTAA	2 cut(s)	24, 501
Tru9I	TTAA	2 cut(s)	24, 501
TscAI	CASTG	2 cut(s)	142, 612
TseFI	GTSAC	2 cut(s)	221, 721
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	2 cut(s)	221, 721
TspDTI	ATGAA	3 cut(s)	353, 425, 449
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	2 cut(s)	142, 612
XapI	RAATTY	1 cut(s)	805
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XhoI	CTCGAG	1 cut(s)	705
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.