Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009140.1

Orthogroup ID

OG0004938

Physical Location & Seq

Genomic Coordinates Forward (+)

31308 .. 33661

Gene Structure 2354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009140.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

atggccaccaccgccgccttgcatttttgtgggcttaaaactctgagccctggatcatcatcatcagagagagcgttagcattatggtctcagcctcagcggctccgttttgccaattccgtggcttccagttgtgggttttattgtccaagtggaagaaacgtttcttcttcgagtacgagtagtagagttttgcgagtcagttgcgagggaggaattgtagatgttcttgacaagaaagatcaaggcaaccaaggtgttgccgaaaatgacaaacaattgacgtgtgtcatgaagtttggtggatcttcagtggcctccgccgagagaatgagggaggttgctgatcttatactcagcttcccgcaagagaggcctgtcattgttctatctgccatgggaaagacgaccaacaaacttttactggcaggagaaaaggctgtcagttgcggtgttaccaatgtatccactattgacgagttgagcttcgtcaaagaattgcatttcaggactgtggaagagcttggagtggatggctctatcatttcaccacacctggaggagctggaacaacttcttaagggcatcgctatgatgaaagagatgactccacggacaaaagattatttggtttcatttggggagtgcatgtccacaaggctatttgcagcttatttgaataagattggtgtgaaagcgcgccagtatgatgcctttgaaatgggtattataacaacagatgacttcacaaatgctgacattttagaggctacttatccggctgttgcaaagaggttacatggtgattggacatgtgatcccgctattccaattgtcactggcttcttggggaaggggtggagatcatgtgcagtgaccacactgggtagaggtggtagtgatttgacagctacaaccattggtaaagcacttgggttgcgagaaatacaggtgtggaaggatgttgatggtgttttgacatgtgatcctaacatatacccacgtgcagaacctgtaccttatttgacatttgacgaggctgctgaacttgcttattttggtgcccaggtcttgcatccacagtctatgagaccagctagagaaggtgatattcctgtgagggttaaaaattcttacaaccccaaagctccaggtaccgtcatcactcatgcaagagatatgagcaaggtttgtaacagaacatggaaaacaccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

405

Amino Acids

43.99

Weight (kDa)

7.5

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02020 AT5G14060 AT5G14060 AT5G14060
fragaria_vesca	FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240
malus_domestica	MD09G1003700.v1.1 MD17G1007300.v1.1
prunus_persica	Prupe.3G312900_v2.0.a1 Prupe.3G312900_v2.0.a1
pyrus_communis	pycom111g00270 pycom17g00290
rosa_chinensis	RchiOBHm_Chr2g0176441
rosa_laevigata	RLG00000022413
rosa_multiflora	Rmu_co8048038.1_g000001 Rmu_sc0009140.1_g000011
rosa_roxburghii	Rroxscaffold_2G00076440
rosa_rugosa	Rorug02G0594300 Rorug02G0594400 Rorug02G0594500 Rorug02G0594600
rosa_samantha	Rh2BG684300 Rh2CG647100 Rh2DG697900
rosa_wichuraiana	Rw2G055190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	731
Acc65I	GGTACC	1 cut(s)	1154
AccB1I	GGYRCC	2 cut(s)	1061, 1154
AccII	CGCG	1 cut(s)	700
AciI	CCGC	7 cut(s)	12, 15, 100, 321, 365, 450, 822
AclI	AACGTT	1 cut(s)	162
AclWI	GGATC	4 cut(s)	61, 313, 812, 980
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	1129
AcuI	CTGAAG	1 cut(s)	294
AcvI	CACGTG	1 cut(s)	1004
AfaI	GTAC	3 cut(s)	178, 1017, 1156
AfiI	CCNNNNNNNGG	1 cut(s)	135
AflII	CTTAAG	1 cut(s)	578
AflIII	ACRYGT	3 cut(s)	284, 812, 980
AgsI	TTSAA	2 cut(s)	679, 719
AjiI	CACGTC	1 cut(s)	285
AjnI	CCWGG	4 cut(s)	49, 555, 1065, 1150
AluBI	AGCT	8 cut(s)	360, 486, 523, 565, 671, 911, 1097, 1148
AluI	AGCT	8 cut(s)	360, 486, 523, 565, 671, 911, 1097, 1148
Alw26I	GTCTC	2 cut(s)	93, 1084
AlwI	GGATC	4 cut(s)	61, 313, 812, 980
AlwNI	CAGNNNCTG	1 cut(s)	1013
AoxI	GGCC	3 cut(s)	3, 315, 374
ApeKI	GCWGC	2 cut(s)	668, 1040
ApoI	RAATTY	1 cut(s)	1129
Asp700I	GAANNNNTTC	2 cut(s)	163, 573
Asp718I	GGTACC	1 cut(s)	1154
AspLEI	GCGC	2 cut(s)	700, 702
AsuHPI	GGTGA	3 cut(s)	540, 815, 1118
BaeGI	GKGCMC	1 cut(s)	1066
BaeI	ACNNNNGTAYC	2 cut(s)	447, 480
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	1061, 1154
BanII	GRGCYC	1 cut(s)	50
BbrPI	CACGTG	1 cut(s)	1004
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	680, 1027
BccI	CCATC	2 cut(s)	527, 962
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	4 cut(s)	51, 557, 1067, 1152
BciVI	GTATCC	1 cut(s)	475
BcoDI	GTCTC	2 cut(s)	93, 1084
BfaI	CTAG	1 cut(s)	1098
BfrI	CTTAAG	1 cut(s)	578
BfuI	GTATCC	1 cut(s)	475
BglI	GCCNNNNNGGC	1 cut(s)	100
BisI	GCNGC	4 cut(s)	15, 101, 669, 1041
BlsI	GCNGC	4 cut(s)	16, 102, 670, 1042
Bme1390I	CCNGG	4 cut(s)	51, 557, 1067, 1152
BmgBI	CACGTC	1 cut(s)	285
BmiI	GGNNCC	3 cut(s)	104, 1063, 1156
BmrFI	CCNGG	4 cut(s)	51, 557, 1067, 1152
BmrI	ACTGGG	1 cut(s)	893
BmsI	GCATC	3 cut(s)	594, 700, 1084
BmuI	ACTGGG	1 cut(s)	893
BoxI	GACNNNNGTC	1 cut(s)	287
BpmI	CTGGAG	2 cut(s)	578, 1134
Bpu10I	CCTNAGC	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	1004
BsaBI	GATNNNNATC	1 cut(s)	58
BsaI	GGTCTC	2 cut(s)	93, 1084
BsaJI	CCNNGG	6 cut(s)	49, 120, 253, 396, 611, 1065
BsaXI	ACNNNNNCTCC	6 cut(s)	204, 234, 635, 665, 853, 883
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	5 cut(s)	129, 429, 703, 844, 888
Bse8I	GATNNNNATC	1 cut(s)	58
BseBI	CCWGG	4 cut(s)	51, 557, 1067, 1152
BseDI	CCNNGG	6 cut(s)	49, 120, 253, 396, 611, 1065
BseGI	GGATG	3 cut(s)	538, 967, 1075
BseJI	GATNNNNATC	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	4 cut(s)	35, 104, 110, 370
BseNI	ACTGG	5 cut(s)	129, 429, 703, 844, 888
BsePI	GCGCGC	1 cut(s)	698
BseRI	GAGGAG	1 cut(s)	575
BseSI	GKGCMC	1 cut(s)	1066
BseXI	GCAGC	2 cut(s)	680, 1027
BsgI	GTGCAG	2 cut(s)	891, 1026
Bsh1236I	CGCG	1 cut(s)	700
BshFI	GGCC	3 cut(s)	5, 317, 376
BshNI	GGYRCC	2 cut(s)	1061, 1154
BsiSI	CCGG	1 cut(s)	779
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	93, 1084
BsnI	GGCC	3 cut(s)	5, 317, 376
Bso31I	GGTCTC	2 cut(s)	93, 1084
Bsp1286I	GDGCHC	2 cut(s)	50, 1066
Bsp143I	GATC	7 cut(s)	53, 241, 305, 346, 817, 863, 985
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	7 cut(s)	12, 15, 100, 321, 365, 450, 822
BspANI	GGCC	3 cut(s)	5, 317, 376
BspCNI	CTCAG	4 cut(s)	36, 103, 109, 369
BspFNI	CGCG	1 cut(s)	700
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	3 cut(s)	104, 1063, 1156
BspPI	GGATC	4 cut(s)	61, 313, 812, 980
BspQI	GCTCTTC	1 cut(s)	513
BspT107I	GGYRCC	2 cut(s)	1061, 1154
BspTI	CTTAAG	1 cut(s)	578
BspTNI	GGTCTC	2 cut(s)	93, 1084
BsrI	ACTGG	5 cut(s)	129, 429, 703, 844, 888
BssECI	CCNNGG	6 cut(s)	49, 120, 253, 396, 611, 1065
BssHII	GCGCGC	1 cut(s)	698
BssMI	GATC	7 cut(s)	53, 241, 305, 346, 817, 863, 985
BssT1I	CCWWGG	2 cut(s)	253, 396
Bst2UI	CCWGG	4 cut(s)	51, 557, 1067, 1152
Bst4CI	ACNGT	4 cut(s)	514, 1083, 1159, 1215
Bst6I	CTCTTC	1 cut(s)	513
BstAFI	CTTAAG	1 cut(s)	578
BstBAI	YACGTR	1 cut(s)	1004
BstC8I	GCNNGC	1 cut(s)	700
BstDEI	CTNAG	4 cut(s)	44, 90, 96, 356
BstDSI	CCRYGG	3 cut(s)	120, 396, 611
BstF5I	GGATG	3 cut(s)	538, 967, 1075
BstFNI	CGCG	1 cut(s)	700
BstHHI	GCGC	2 cut(s)	700, 702
BstKTI	GATC	7 cut(s)	56, 244, 308, 349, 820, 866, 988
BstMAI	GTCTC	2 cut(s)	93, 1084
BstMBI	GATC	7 cut(s)	53, 241, 305, 346, 817, 863, 985
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 100, 373, 1049
BstNI	CCWGG	4 cut(s)	51, 557, 1067, 1152
BstNSI	RCATGY	3 cut(s)	652, 816, 984
BstPAI	GACNNNNGTC	1 cut(s)	287
BstSCI	CCNGG	4 cut(s)	49, 555, 1065, 1150
BstSLI	GKGCMC	1 cut(s)	1066
BstUI	CGCG	1 cut(s)	700
BstV1I	GCAGC	2 cut(s)	680, 1027
BstX2I	RGATCY	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	305
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	3 cut(s)	5, 317, 376
BtgI	CCRYGG	3 cut(s)	120, 396, 611
BtgZI	GCGATG	1 cut(s)	571
BtrI	CACGTC	1 cut(s)	285
BtsCI	GGATG	3 cut(s)	538, 967, 1075
BtsI	GCAGTG	1 cut(s)	879
BtsIMutI	CAGTG	4 cut(s)	318, 837, 879, 881
Cac8I	GCNNGC	1 cut(s)	700
CaiI	CAGNNNCTG	1 cut(s)	1013
CciI	TCATGA	1 cut(s)	291
CfoI	GCGC	2 cut(s)	700, 702
Csp6I	GTAC	3 cut(s)	177, 1016, 1155
CviAII	CATG	9 cut(s)	292, 397, 649, 800, 813, 867, 981, 1169, 1203
CviQI	GTAC	3 cut(s)	177, 1016, 1155
DdeI	CTNAG	4 cut(s)	44, 90, 96, 356
DpnI	GATC	7 cut(s)	55, 243, 307, 348, 819, 865, 987
DpnII	GATC	7 cut(s)	53, 241, 305, 346, 817, 863, 985
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
EciI	GGCGGA	1 cut(s)	310
Eco130I	CCWWGG	2 cut(s)	253, 396
Eco147I	AGGCCT	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	50
Eco31I	GGTCTC	2 cut(s)	93, 1084
Eco57I	CTGAAG	1 cut(s)	294
Eco72I	CACGTG	1 cut(s)	1004
EcoRII	CCWGG	4 cut(s)	49, 555, 1065, 1150
EcoT14I	CCWWGG	2 cut(s)	253, 396
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	2 cut(s)	253, 396
FaeI	CATG	9 cut(s)	295, 400, 652, 803, 816, 870, 984, 1172, 1206
FatI	CATG	9 cut(s)	291, 396, 648, 799, 812, 866, 980, 1168, 1202
FauI	CCCGC	2 cut(s)	372, 829
Fnu4HI	GCNGC	4 cut(s)	15, 101, 669, 1041
FokI	GGATG	3 cut(s)	545, 974, 1062
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	4 cut(s)	15, 101, 669, 1041
FspBI	CTAG	1 cut(s)	1098
GlaI	GCGC	2 cut(s)	699, 701
GluI	GCNGC	4 cut(s)	15, 101, 669, 1041
GsuI	CTGGAG	2 cut(s)	578, 1134
HaeIII	GGCC	3 cut(s)	5, 317, 376
HapII	CCGG	1 cut(s)	779
HhaI	GCGC	2 cut(s)	700, 702
Hin1II	CATG	9 cut(s)	295, 400, 652, 803, 816, 870, 984, 1172, 1206
Hin6I	GCGC	2 cut(s)	698, 700
HinP1I	GCGC	2 cut(s)	698, 700
HinfI	GANTC	2 cut(s)	198, 607
HpaII	CCGG	1 cut(s)	779
HphI	GGTGA	3 cut(s)	540, 815, 1118
Hpy166II	GTNNAC	1 cut(s)	654
Hpy188I	TCNGA	2 cut(s)	45, 67
Hpy188III	TCNNGA	3 cut(s)	230, 292, 508
Hpy8I	GTNNAC	1 cut(s)	654
HpyAV	CCTTC	3 cut(s)	847, 952, 1097
HpyCH4III	ACNGT	4 cut(s)	514, 1083, 1159, 1215
HpyCH4IV	ACGT	3 cut(s)	162, 284, 1003
HpyCH4V	TGCA	9 cut(s)	22, 502, 648, 668, 788, 872, 1007, 1075, 1172
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 100, 373, 1049
HpyF3I	CTNAG	4 cut(s)	44, 90, 96, 356
HpySE526I	ACGT	3 cut(s)	162, 284, 1003
Hsp92II	CATG	9 cut(s)	295, 400, 652, 803, 816, 870, 984, 1172, 1206
HspAI	GCGC	2 cut(s)	698, 700
KpnI	GGTACC	1 cut(s)	1158
Kzo9I	GATC	7 cut(s)	53, 241, 305, 346, 817, 863, 985
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	3 cut(s)	108, 562, 1153
Lsp1109I	GCAGC	2 cut(s)	680, 1027
LweI	GCATC	3 cut(s)	594, 700, 1084
MaeI	CTAG	1 cut(s)	1098
MaeII	ACGT	3 cut(s)	162, 284, 1003
MaeIII	GTNAC	5 cut(s)	454, 795, 835, 874, 1193
MalI	GATC	7 cut(s)	55, 243, 307, 348, 819, 865, 987
MboI	GATC	7 cut(s)	53, 241, 305, 346, 817, 863, 985
MboII	GAAGA	5 cut(s)	159, 162, 168, 300, 530
MfeI	CAATTG	2 cut(s)	278, 831
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	2 cut(s)	50, 1066
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	115, 216, 278, 497, 831, 1129
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	207, 601
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	163, 573
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	36, 579, 1125
MslI	CAYNNNNRTG	2 cut(s)	27, 590
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	100
MspCI	CTTAAG	1 cut(s)	578
MspI	CCGG	1 cut(s)	779
MspR9I	CCNGG	4 cut(s)	51, 557, 1067, 1152
MunI	CAATTG	2 cut(s)	278, 831
MvaI	CCWGG	4 cut(s)	51, 557, 1067, 1152
MvnI	CGCG	1 cut(s)	700
MwoI	GCNNNNNNNGC	4 cut(s)	11, 100, 373, 1049
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	7 cut(s)	53, 241, 305, 346, 817, 863, 985
NlaIII	CATG	9 cut(s)	295, 400, 652, 803, 816, 870, 984, 1172, 1206
NlaIV	GGNNCC	3 cut(s)	104, 1063, 1156
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	2 cut(s)	835, 874
NspI	RCATGY	3 cut(s)	652, 816, 984
PagI	TCATGA	1 cut(s)	291
PauI	GCGCGC	1 cut(s)	698
PceI	AGGCCT	1 cut(s)	376
PciI	ACATGT	2 cut(s)	812, 980
PciSI	GCTCTTC	1 cut(s)	513
PdmI	GAANNNNTTC	2 cut(s)	163, 573
PkrI	GCNGC	4 cut(s)	16, 102, 670, 1042
PleI	GAGTC	2 cut(s)	206, 601
PmaCI	CACGTG	1 cut(s)	1004
PmlI	CACGTG	1 cut(s)	1004
PpsI	GAGTC	2 cut(s)	206, 601
Ppu21I	YACGTR	1 cut(s)	1004
PscI	ACATGT	2 cut(s)	812, 980
PshAI	GACNNNNGTC	1 cut(s)	287
PsiI	TTATAA	1 cut(s)	731
Psp1406I	AACGTT	1 cut(s)	162
Psp6I	CCWGG	4 cut(s)	49, 555, 1065, 1150
PspCI	CACGTG	1 cut(s)	1004
PspGI	CCWGG	4 cut(s)	49, 555, 1065, 1150
PspN4I	GGNNCC	3 cut(s)	104, 1063, 1156
PstNI	CAGNNNCTG	1 cut(s)	1013
PsuI	RGATCY	1 cut(s)	305
PteI	GCGCGC	1 cut(s)	698
RsaI	GTAC	3 cut(s)	178, 1017, 1156
RsaNI	GTAC	3 cut(s)	177, 1016, 1155
RseI	CAYNNNNRTG	2 cut(s)	27, 590
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	3 cut(s)	36, 579, 1125
SatI	GCNGC	4 cut(s)	15, 101, 669, 1041
Sau3AI	GATC	7 cut(s)	53, 241, 305, 346, 817, 863, 985
SchI	GAGTC	2 cut(s)	207, 601
ScrFI	CCNGG	4 cut(s)	51, 557, 1067, 1152
SduI	GDGCHC	2 cut(s)	50, 1066
SfaNI	GCATC	3 cut(s)	594, 700, 1084
SmiMI	CAYNNNNRTG	2 cut(s)	27, 590
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	6 cut(s)	115, 216, 278, 497, 831, 1129
SseBI	AGGCCT	1 cut(s)	376
SsiI	CCGC	7 cut(s)	12, 15, 100, 321, 365, 450, 822
SspMI	CTAG	1 cut(s)	1098
StuI	AGGCCT	1 cut(s)	376
StyD4I	CCNGG	4 cut(s)	49, 555, 1065, 1150
StyI	CCWWGG	2 cut(s)	253, 396
TaaI	ACNGT	4 cut(s)	514, 1083, 1159, 1215
TaiI	ACGT	3 cut(s)	165, 287, 1006
TaqI	TCGA	1 cut(s)	173
TasI	AATT	6 cut(s)	115, 216, 278, 497, 831, 1129
TauI	GCSGC	2 cut(s)	17, 103
Tru1I	TTAA	3 cut(s)	36, 579, 1125
Tru9I	TTAA	3 cut(s)	36, 579, 1125
TscAI	CASTG	4 cut(s)	318, 844, 879, 888
TseFI	GTSAC	2 cut(s)	835, 874
TseI	GCWGC	2 cut(s)	668, 1040
Tsp45I	GTSAC	2 cut(s)	835, 874
TspDTI	ATGAA	3 cut(s)	308, 611, 624
TspGWI	ACGGA	3 cut(s)	95, 109, 628
TspRI	CASTG	4 cut(s)	318, 844, 879, 888
Vha464I	CTTAAG	1 cut(s)	578
XapI	RAATTY	1 cut(s)	1129
XceI	RCATGY	3 cut(s)	652, 816, 984
XmnI	GAANNNNTTC	2 cut(s)	163, 573
XspI	CTAG	1 cut(s)	1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.