Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8048038.1

Orthogroup ID

OG0004938

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 410

Gene Structure 409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8048038.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 409 bp

atggccaccaccgccgccttgcatttttgtgggcttaaaactctgagccctggatcatcatcatcagagagagcgttagcattatggtctcagcctcagcggctccgttttgccaattccgtggcttccagttgtgggttttattgtccaagtggaagaaacgtttcttcttcgagtacgagtagtagagttttgcgagtcagttgcgagggaggaattgtagatgttcttgacaagaaagatcaaggcaaccaaggtgttgccgaaaatgacaaacaattgacgtgtgtcatgaagtttggtggatcttcagtggcctccgccgagagaatgagggaggttgctgatcttatactcagcttcccgcaagagaggcctgtcattgttctatctgccatgggaaagacga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

136

Amino Acids

14.41

Weight (kDa)

8.97

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02020 AT5G14060 AT5G14060 AT5G14060
fragaria_vesca	FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240 FvH4_6g54240
malus_domestica	MD09G1003700.v1.1 MD17G1007300.v1.1
prunus_persica	Prupe.3G312900_v2.0.a1 Prupe.3G312900_v2.0.a1
pyrus_communis	pycom111g00270 pycom17g00290
rosa_chinensis	RchiOBHm_Chr2g0176441
rosa_laevigata	RLG00000022413
rosa_multiflora	Rmu_co8048038.1_g000001 Rmu_sc0009140.1_g000011
rosa_roxburghii	Rroxscaffold_2G00076440
rosa_rugosa	Rorug02G0594300 Rorug02G0594400 Rorug02G0594500 Rorug02G0594600
rosa_samantha	Rh2BG684300 Rh2CG647100 Rh2DG697900
rosa_wichuraiana	Rw2G055190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	12, 15, 100, 321, 365
AclI	AACGTT	1 cut(s)	162
AclWI	GGATC	2 cut(s)	61, 313
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	135
AflIII	ACRYGT	1 cut(s)	284
AjiI	CACGTC	1 cut(s)	285
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	1 cut(s)	360
AluI	AGCT	1 cut(s)	360
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	61, 313
AoxI	GGCC	3 cut(s)	3, 315, 374
Asp700I	GAANNNNTTC	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	96
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	93
BglI	GCCNNNNNGGC	1 cut(s)	100
BisI	GCNGC	2 cut(s)	15, 101
BlsI	GCNGC	2 cut(s)	16, 102
Bme1390I	CCNGG	1 cut(s)	51
BmgBI	CACGTC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	51
BoxI	GACNNNNGTC	1 cut(s)	287
Bpu10I	CCTNAGC	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	58
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	4 cut(s)	49, 120, 253, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	4 cut(s)	49, 120, 253, 396
BseJI	GATNNNNATC	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	4 cut(s)	35, 104, 110, 370
BseNI	ACTGG	1 cut(s)	129
BshFI	GGCC	3 cut(s)	5, 317, 376
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	93
BsnI	GGCC	3 cut(s)	5, 317, 376
Bso31I	GGTCTC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	4 cut(s)	53, 241, 305, 346
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	5 cut(s)	12, 15, 100, 321, 365
BspANI	GGCC	3 cut(s)	5, 317, 376
BspCNI	CTCAG	4 cut(s)	36, 103, 109, 369
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	104
BspPI	GGATC	2 cut(s)	61, 313
BspTNI	GGTCTC	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	4 cut(s)	49, 120, 253, 396
BssMI	GATC	4 cut(s)	53, 241, 305, 346
BssT1I	CCWWGG	2 cut(s)	253, 396
Bst2UI	CCWGG	1 cut(s)	51
BstDEI	CTNAG	4 cut(s)	44, 90, 96, 356
BstDSI	CCRYGG	2 cut(s)	120, 396
BstKTI	GATC	4 cut(s)	56, 244, 308, 349
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	4 cut(s)	53, 241, 305, 346
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 100, 373
BstNI	CCWGG	1 cut(s)	51
BstPAI	GACNNNNGTC	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	305
BsuRI	GGCC	3 cut(s)	5, 317, 376
BtgI	CCRYGG	2 cut(s)	120, 396
BtrI	CACGTC	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	318
CciI	TCATGA	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	2 cut(s)	292, 397
CviJI	RGCY	9 cut(s)	5, 34, 48, 94, 103, 125, 317, 360, 376
CviKI_1	RGCY	9 cut(s)	5, 34, 48, 94, 103, 125, 317, 360, 376
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	4 cut(s)	44, 90, 96, 356
DpnI	GATC	4 cut(s)	55, 243, 307, 348
DpnII	GATC	4 cut(s)	53, 241, 305, 346
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	310
Eco130I	CCWWGG	2 cut(s)	253, 396
Eco147I	AGGCCT	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	50
Eco31I	GGTCTC	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	2 cut(s)	253, 396
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	2 cut(s)	253, 396
FaeI	CATG	2 cut(s)	295, 400
FaiI	YATR	4 cut(s)	85, 293, 353, 398
FatI	CATG	2 cut(s)	291, 396
FauI	CCCGC	1 cut(s)	372
Fnu4HI	GCNGC	2 cut(s)	15, 101
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	15, 101
GluI	GCNGC	2 cut(s)	15, 101
HaeIII	GGCC	3 cut(s)	5, 317, 376
Hin1II	CATG	2 cut(s)	295, 400
HinfI	GANTC	1 cut(s)	198
Hpy188I	TCNGA	2 cut(s)	45, 67
Hpy188III	TCNNGA	2 cut(s)	230, 292
HpyCH4IV	ACGT	2 cut(s)	162, 284
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 100, 373
HpyF3I	CTNAG	4 cut(s)	44, 90, 96, 356
HpySE526I	ACGT	2 cut(s)	162, 284
Hsp92II	CATG	2 cut(s)	295, 400
Kzo9I	GATC	4 cut(s)	53, 241, 305, 346
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	4 cut(s)	36, 63, 142, 390
MaeII	ACGT	2 cut(s)	162, 284
MalI	GATC	4 cut(s)	55, 243, 307, 348
MboI	GATC	4 cut(s)	53, 241, 305, 346
MboII	GAAGA	4 cut(s)	159, 162, 168, 300
MfeI	CAATTG	1 cut(s)	278
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	50
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	115, 216, 278
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	207
MnlI	CCTC	7 cut(s)	105, 202, 206, 327, 328, 331, 366
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	163
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	27
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	51
MunI	CAATTG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	3 cut(s)	11, 100, 373
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	4 cut(s)	53, 241, 305, 346
NlaIII	CATG	2 cut(s)	295, 400
NlaIV	GGNNCC	1 cut(s)	104
NmeAIII	GCCGAG	1 cut(s)	349
PagI	TCATGA	1 cut(s)	291
PceI	AGGCCT	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	16, 102
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PshAI	GACNNNNGTC	1 cut(s)	287
Psp1406I	AACGTT	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	305
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	2 cut(s)	15, 101
Sau3AI	GATC	4 cut(s)	53, 241, 305, 346
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	5 cut(s)	165, 259, 287, 342, 362
SmiMI	CAYNNNNRTG	1 cut(s)	27
Sse9I	AATT	3 cut(s)	115, 216, 278
SseBI	AGGCCT	1 cut(s)	376
SsiI	CCGC	5 cut(s)	12, 15, 100, 321, 365
StuI	AGGCCT	1 cut(s)	376
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	2 cut(s)	253, 396
TaiI	ACGT	2 cut(s)	165, 287
TaqI	TCGA	1 cut(s)	173
TasI	AATT	3 cut(s)	115, 216, 278
TauI	GCSGC	2 cut(s)	17, 103
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	318
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	2 cut(s)	95, 109
TspRI	CASTG	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.