Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0015126

Physical Location & Seq

Genomic Coordinates Forward (+)

373419 .. 374738

Gene Structure 1320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAGGAACCCATCGCCTTCGTCGAAAGCAGCAGCAGCAGCAGCAAGTGCTAAGATGCAAACGACGATAACAGCGTCGTCCTCGTCGAGCAAGGCGGCTGGGGTTGCTGGAGGGACCAAGACGCCGTGTTGCGCAAAGGTGGGTTTGAAGAGAGGGCCGTGGACTCCCGAAGAGGACGAGCTGCTAGCAAATTACATCAAGAAAGAAGGGGAGGGACGGTGGCGGATCCTTCCCAAGCGGGCTGGGTTGCTCCGCTGCGGTAAGAGCTGCCGCCTCCGCTGGATGAACTATCTCCGCCCTTCTGTCAAGCGCGGCCAGATCGCCCCCGATGAAGAAGATCTCATCCTTCGCCTCCATCGCCTTCTGGGCAATCGGTGGTCTTTGATAGCTGGGAGGATTCCAGGCCGTACGGACAATGAGATAAAGAACTACTGGAACACACACCTGAGCAAGAAGCTGATAAACCAAGGCATAGATCCCAGAACCCACAAGCCTCTCAATCCAGATCATCACTCTGCTGCTGATGATGCCGACGTGGACAACACAAACAAATCAACTGCTGTTGCTTCTTCTTCCAAAGCCAATGATCGGTTCTCAAACCCTAACCCTAGTCCCCCTTCTGATCGTCTTGTCCATAAAGAAGGGGATCCAAATAACAGCCGTAATGGTGGAAACATCGCAATTGATGATCATGATCTGGGCACTATAGTCCATGGCTATGCAAATATGATCACGTCCATCAACAATCCCGATGCTTCTTCTTCGGCCACGGCAACGGGTACTTTGAGTTTGAGGAGCAACAACAGCCACGGTGGAGTACTACTTGGGGGAGGAGGAAATGAAGAGGACGACGACATCAACTGTTGTGCGGATGACGTCTTCTCTTCGTTTCTGAATTCGTTGATCAATGAGGATCCATTTCATGGACAACACCAATTGCAACAAGTACTGCAGAATGGGAATGTTAGTGCACACGCAGCTGCTGCTGGTTCCGAGAACCTTCCTTTGATTACTATGACTGGTGCTAGTACTACGGCGCCATCAACATTTGGCTGGGAGTCTGCTGTGCTCATGTCTTCTGCTTTCATCCAAAATGATCACCAGAGGGTTAATGATCCAACGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

376

Amino Acids

40.18

Weight (kDa)

6.9

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	51 - 98	2.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	54 - 112	2.8e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	109 - 149	1.7e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	109 - 153	2.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13540
fragaria_vesca	FvH4_3g45450
malus_domestica	MD11G1006500.v1.1 MD11G1007500.v1.1
prunus_persica	Prupe.6G004700_v2.0.a1
pyrus_communis	pycom11g00510
rosa_laevigata	RLG00000037022
rosa_multiflora	Rmu_co8442277.1_g000001 Rmu_sc0011792.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001240
rosa_rugosa	Rorug05G0483600
rosa_samantha	Rh5AG533000 Rh5BG560300 Rh5CG583000 Rh5DG569600
rosa_wichuraiana	Rw5G049990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	879
Acc16I	TGCGCA	1 cut(s)	133
AccB1I	GGYRCC	1 cut(s)	1036
AccB7I	CCANNNNNTGG	1 cut(s)	923
AccII	CGCG	1 cut(s)	312
AclWI	GGATC	8 cut(s)	220, 233, 470, 641, 654, 908, 921, 1109
AcoI	YGGCCR	2 cut(s)	313, 765
AcsI	RAATTY	1 cut(s)	895
AcyI	GRCGYC	3 cut(s)	122, 876, 1037
AfaI	GTAC	5 cut(s)	409, 781, 819, 948, 1030
AfiI	CCNNNNNNNGG	2 cut(s)	588, 923
AgsI	TTSAA	1 cut(s)	148
AjiI	CACGTC	2 cut(s)	535, 735
AjnI	CCWGG	1 cut(s)	400
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	5 cut(s)	181, 267, 389, 457, 980
AluI	AGCT	5 cut(s)	181, 267, 389, 457, 980
Alw21I	GWGCWC	2 cut(s)	973, 1071
Alw44I	GTGCAC	1 cut(s)	969
AlwI	GGATC	8 cut(s)	220, 233, 470, 641, 654, 908, 921, 1109
AlwNI	CAGNNNCTG	1 cut(s)	983
AoxI	GGCC	4 cut(s)	155, 313, 403, 765
ApaLI	GTGCAC	1 cut(s)	969
ApoI	RAATTY	1 cut(s)	895
AspLEI	GCGC	3 cut(s)	134, 312, 1039
AspS9I	GGNCC	2 cut(s)	114, 155
AsuHPI	GGTGA	1 cut(s)	1091
AsuNHI	GCTAGC	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	114
BaeGI	GKGCMC	2 cut(s)	704, 973
BamHI	GGATCC	3 cut(s)	225, 646, 913
BanI	GGYRCC	1 cut(s)	1036
BbsI	GAAGAC	2 cut(s)	871, 1068
Bbv12I	GWGCWC	2 cut(s)	973, 1071
BccI	CCATC	4 cut(s)	19, 363, 746, 1048
BceAI	ACGGC	6 cut(s)	109, 142, 390, 645, 786, 1050
BciT130I	CCWGG	1 cut(s)	402
BclI	TGATCA	4 cut(s)	688, 729, 903, 1096
BfaI	CTAG	3 cut(s)	185, 609, 1026
BfmI	CTRYAG	2 cut(s)	705, 950
BfoI	RGCGCY	1 cut(s)	1040
BglI	GCCNNNNNGGC	1 cut(s)	366
BglII	AGATCT	1 cut(s)	337
BmcAI	AGTACT	3 cut(s)	819, 948, 1030
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	1 cut(s)	114
BmgBI	CACGTC	2 cut(s)	535, 735
BmgT120I	GGNCC	2 cut(s)	114, 155
BmiI	GGNNCC	7 cut(s)	8, 115, 227, 648, 915, 991, 1038
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	3 cut(s)	45, 517, 742
BmtI	GCTAGC	1 cut(s)	188
BpiI	GAAGAC	2 cut(s)	871, 1068
BpmI	CTGGAG	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	446
BsaBI	GATNNNNATC	1 cut(s)	693
BsaHI	GRCGYC	3 cut(s)	122, 876, 1037
BsaJI	CCNNGG	5 cut(s)	158, 466, 712, 768, 808
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	588, 923
Bse1I	ACTGG	2 cut(s)	437, 1024
Bse8I	GATNNNNATC	1 cut(s)	693
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	5 cut(s)	158, 466, 712, 768, 808
BseGI	GGATG	4 cut(s)	288, 342, 877, 1086
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	2 cut(s)	588, 923
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	2 cut(s)	437, 1024
BseRI	GAGGAG	2 cut(s)	808, 846
BseSI	GKGCMC	2 cut(s)	704, 973
BseYI	CCCAGC	4 cut(s)	98, 242, 389, 1053
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	4 cut(s)	157, 315, 405, 767
BshNI	GGYRCC	1 cut(s)	1036
BsiHKAI	GWGCWC	2 cut(s)	973, 1071
BsiWI	CGTACG	1 cut(s)	407
BslFI	GGGAC	3 cut(s)	127, 228, 597
BslI	CCNNNNNNNGG	2 cut(s)	588, 923
BsmFI	GGGAC	3 cut(s)	127, 228, 597
BsnI	GGCC	4 cut(s)	157, 315, 405, 767
Bsp1286I	GDGCHC	3 cut(s)	704, 973, 1071
Bsp19I	CCATGG	1 cut(s)	712
BspANI	GGCC	4 cut(s)	157, 315, 405, 767
BspCNI	CTCAG	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	7 cut(s)	8, 115, 227, 648, 915, 991, 1038
BspMAI	CTGCAG	1 cut(s)	954
BspOI	GCTAGC	1 cut(s)	188
BspPI	GGATC	8 cut(s)	220, 233, 470, 641, 654, 908, 921, 1109
BspT107I	GGYRCC	1 cut(s)	1036
BsrI	ACTGG	2 cut(s)	437, 1024
BssECI	CCNNGG	5 cut(s)	158, 466, 712, 768, 808
BssNI	GRCGYC	3 cut(s)	122, 876, 1037
BssT1I	CCWWGG	2 cut(s)	466, 712
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	3 cut(s)	219, 812, 863
Bst6I	CTCTTC	4 cut(s)	143, 165, 837, 889
BstACI	GRCGYC	3 cut(s)	122, 876, 1037
BstAPI	GCANNNNNTGC	2 cut(s)	47, 983
BstC8I	GCNNGC	2 cut(s)	186, 240
BstDEI	CTNAG	2 cut(s)	51, 446
BstDSI	CCRYGG	4 cut(s)	158, 712, 768, 808
BstF5I	GGATG	4 cut(s)	288, 342, 877, 1086
BstFNI	CGCG	1 cut(s)	312
BstH2I	RGCGCY	1 cut(s)	1040
BstHHI	GCGC	3 cut(s)	134, 312, 1039
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	2 cut(s)	705, 950
BstSLI	GKGCMC	2 cut(s)	704, 973
BstUI	CGCG	1 cut(s)	312
BstV2I	GAAGAC	2 cut(s)	871, 1068
BstX2I	RGATCY	5 cut(s)	225, 337, 475, 646, 913
BstYI	RGATCY	5 cut(s)	225, 337, 475, 646, 913
BsuRI	GGCC	4 cut(s)	157, 315, 405, 767
BtgI	CCRYGG	4 cut(s)	158, 712, 768, 808
BtgZI	GCGATG	2 cut(s)	341, 661
BtrI	CACGTC	2 cut(s)	535, 735
BtsCI	GGATG	4 cut(s)	288, 342, 877, 1086
Cac8I	GCNNGC	2 cut(s)	186, 240
CaiI	CAGNNNCTG	1 cut(s)	983
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	3 cut(s)	134, 312, 1039
Cfr13I	GGNCC	2 cut(s)	114, 155
CseI	GACGC	2 cut(s)	63, 130
Csp6I	GTAC	5 cut(s)	408, 780, 818, 947, 1029
CviAII	CATG	4 cut(s)	692, 713, 923, 1072
CviQI	GTAC	5 cut(s)	408, 780, 818, 947, 1029
DdeI	CTNAG	2 cut(s)	51, 446
DinI	GGCGCC	1 cut(s)	1038
EaeI	YGGCCR	2 cut(s)	313, 765
Eam1104I	CTCTTC	4 cut(s)	143, 165, 837, 889
EarI	CTCTTC	4 cut(s)	143, 165, 837, 889
EciI	GGCGGA	2 cut(s)	238, 284
Eco130I	CCWWGG	2 cut(s)	466, 712
Eco47I	GGWCC	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	895
EcoRII	CCWGG	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	466, 712
EgeI	GGCGCC	1 cut(s)	1038
EheI	GGCGCC	1 cut(s)	1038
ErhI	CCWWGG	2 cut(s)	466, 712
FaeI	CATG	4 cut(s)	695, 716, 926, 1075
FaqI	GGGAC	3 cut(s)	127, 228, 597
FatI	CATG	4 cut(s)	691, 712, 922, 1071
FauI	CCCGC	1 cut(s)	231
FbaI	TGATCA	4 cut(s)	688, 729, 903, 1096
FokI	GGATG	4 cut(s)	295, 329, 884, 1073
FspBI	CTAG	3 cut(s)	185, 609, 1026
FspI	TGCGCA	1 cut(s)	133
GlaI	GCGC	3 cut(s)	133, 311, 1038
GsaI	CCCAGC	4 cut(s)	102, 246, 393, 1057
GsuI	CTGGAG	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	1040
HaeIII	GGCC	4 cut(s)	157, 315, 405, 767
HgaI	GACGC	2 cut(s)	63, 130
HhaI	GCGC	3 cut(s)	134, 312, 1039
Hin1I	GRCGYC	3 cut(s)	122, 876, 1037
Hin1II	CATG	4 cut(s)	695, 716, 926, 1075
Hin6I	GCGC	3 cut(s)	132, 310, 1037
HinP1I	GCGC	3 cut(s)	132, 310, 1037
HinfI	GANTC	3 cut(s)	163, 397, 1058
HphI	GGTGA	1 cut(s)	1091
Hpy166II	GTNNAC	3 cut(s)	162, 538, 971
Hpy188I	TCNGA	3 cut(s)	622, 894, 994
Hpy188III	TCNNGA	5 cut(s)	167, 199, 503, 692, 749
Hpy8I	GTNNAC	3 cut(s)	162, 538, 971
Hpy99I	CGWCG	6 cut(s)	25, 67, 79, 88, 536, 854
HpyAV	CCTTC	9 cut(s)	27, 200, 239, 309, 356, 371, 627, 635, 1010
HpyCH4III	ACNGT	3 cut(s)	219, 812, 863
HpyCH4IV	ACGT	3 cut(s)	534, 734, 876
HpyCH4V	TGCA	5 cut(s)	58, 722, 940, 952, 971
HpyF3I	CTNAG	2 cut(s)	51, 446
HpySE526I	ACGT	3 cut(s)	534, 734, 876
Hsp92I	GRCGYC	3 cut(s)	122, 876, 1037
Hsp92II	CATG	4 cut(s)	695, 716, 926, 1075
HspAI	GCGC	3 cut(s)	132, 310, 1037
KasI	GGCGCC	1 cut(s)	1036
Ksp22I	TGATCA	4 cut(s)	688, 729, 903, 1096
LmnI	GCTCC	2 cut(s)	255, 795
LweI	GCATC	3 cut(s)	45, 517, 742
MaeI	CTAG	3 cut(s)	185, 609, 1026
MaeII	ACGT	3 cut(s)	534, 734, 876
MfeI	CAATTG	2 cut(s)	681, 935
MflI	RGATCY	5 cut(s)	225, 337, 475, 646, 913
MhlI	GDGCHC	3 cut(s)	704, 973, 1071
MluCI	AATT	4 cut(s)	190, 681, 895, 935
Mly113I	GGCGCC	1 cut(s)	1037
MlyI	GAGTC	2 cut(s)	157, 1067
MseI	TTAA	1 cut(s)	1110
MslI	CAYNNNNRTG	1 cut(s)	717
MspA1I	CMGCKG	3 cut(s)	255, 279, 980
MspR9I	CCNGG	1 cut(s)	402
MunI	CAATTG	2 cut(s)	681, 935
MvaI	CCWGG	1 cut(s)	402
MvnI	CGCG	1 cut(s)	312
NarI	GGCGCC	1 cut(s)	1037
NcoI	CCATGG	1 cut(s)	712
NheI	GCTAGC	1 cut(s)	184
NlaIII	CATG	4 cut(s)	695, 716, 926, 1075
NlaIV	GGNNCC	7 cut(s)	8, 115, 227, 648, 915, 991, 1038
NsbI	TGCGCA	1 cut(s)	133
PagI	TCATGA	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	3 cut(s)	20, 71, 83
PfeI	GAWTC	1 cut(s)	397
Pfl23II	CGTACG	1 cut(s)	407
PflMI	CCANNNNNTGG	1 cut(s)	923
PleI	GAGTC	2 cut(s)	157, 1066
PluTI	GGCGCC	1 cut(s)	1040
PpsI	GAGTC	2 cut(s)	157, 1066
Psp6I	CCWGG	1 cut(s)	400
PspFI	CCCAGC	4 cut(s)	98, 242, 389, 1053
PspGI	CCWGG	1 cut(s)	400
PspLI	CGTACG	1 cut(s)	407
PspN4I	GGNNCC	7 cut(s)	8, 115, 227, 648, 915, 991, 1038
PspPI	GGNCC	2 cut(s)	114, 155
PstI	CTGCAG	1 cut(s)	954
PstNI	CAGNNNCTG	1 cut(s)	983
PsuI	RGATCY	5 cut(s)	225, 337, 475, 646, 913
PvuII	CAGCTG	1 cut(s)	980
RsaI	GTAC	5 cut(s)	409, 781, 819, 948, 1030
RsaNI	GTAC	5 cut(s)	408, 780, 818, 947, 1029
RseI	CAYNNNNRTG	1 cut(s)	717
SaqAI	TTAA	1 cut(s)	1110
Sau96I	GGNCC	2 cut(s)	114, 155
ScaI	AGTACT	3 cut(s)	819, 948, 1030
SchI	GAGTC	2 cut(s)	157, 1067
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	3 cut(s)	704, 973, 1071
SfaNI	GCATC	3 cut(s)	45, 517, 742
SfcI	CTRYAG	2 cut(s)	705, 950
SfoI	GGCGCC	1 cut(s)	1038
SinI	GGWCC	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	717
Sse9I	AATT	4 cut(s)	190, 681, 895, 935
SspDI	GGCGCC	1 cut(s)	1036
SspMI	CTAG	3 cut(s)	185, 609, 1026
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	2 cut(s)	466, 712
TaaI	ACNGT	3 cut(s)	219, 812, 863
TaiI	ACGT	3 cut(s)	537, 737, 879
TaqI	TCGA	2 cut(s)	23, 86
TasI	AATT	4 cut(s)	190, 681, 895, 935
TatI	WGTACW	3 cut(s)	817, 946, 1028
TauI	GCSGC	3 cut(s)	98, 273, 315
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	1 cut(s)	1110
Tru9I	TTAA	1 cut(s)	1110
TspDTI	ATGAA	5 cut(s)	299, 345, 855, 911, 1075
TspGWI	ACGGA	1 cut(s)	425
Van91I	CCANNNNNTGG	1 cut(s)	923
VneI	GTGCAC	1 cut(s)	969
VpaK11BI	GGWCC	1 cut(s)	114
XapI	RAATTY	1 cut(s)	895
XspI	CTAG	3 cut(s)	185, 609, 1026
ZraI	GACGTC	1 cut(s)	877
ZrmI	AGTACT	3 cut(s)	819, 948, 1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.