Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010349

Physical Location & Seq

Genomic Coordinates Reverse (-)

522670 .. 523682

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAAACTATACGAAGATGCTTGCACAATTATTGCCACTCCACCACCCAACTACCTTCAAAATGGCATAAAAACCAAAAGGGCAGCCAAGAAAAAGCAGAAAAACCACACACAAAAAAAAATAAATAAAAAAACCCATTTCTTCTCTCTCTCCCGGCCCCCATCTCTCCTTTCTTTCTGCACTACCATGAGTAACTCAAAGGATGTGAGTGTGCAGGCACTCACATGCGCCTTGGTGTTGATATTTCTAGTTGGTTTTGGCAGCTGCAACATAGACCAGGATAGGGCAGAATGTACAGACCAGCTAGTAGGGCTTGCCCCGTGTCTTCCGTACGTCGGCGGTGATGCCAAAACTCCAACCTTAGATTGTTGCAGTGGAATTAAAGAAGTGGTGCAGAAGAGCAAGAAATGCCTCTGTATCCTAATCAAGGACCGCGACGATCCGAAACTCGGCCTCAAGATCAATTCCACTCTTGCTTTGAACCTTCCTAGTTCCTGTCATGTACCTGTCAACATATCAACATGTATTGATCTCTTGAATTTGCCATCAAACTCTCCGGACGCGAAGATGTTCCGGGATTTTGAAAACCAGACTGAAGCGAGAAGCAACACTACTGCCCCTTTATCCAGCGTGAATTCTACAAGCAGTGGTACAGTTGCTCAAGCAAAGAGTGATGGTGGGAGGCTGGAAAAAAGATTGATGGGAATAGAGATGCTATTTGGGACTCTGCTGGTGTTTTATATTTCACACTTGGTGTTTTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

256

Amino Acids

27.83

Weight (kDa)

9.04

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	93 - 175	2.5e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	98 - 172	2.5e-11	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55260 AT1G55260
fragaria_vesca	FvH4_3g44850
malus_domestica	MD03G1007900.v1.1 MD11G1011100.v1.1
prunus_persica	Prupe.6G009900_v2.0.a1
pyrus_communis	pycom03g00810 pycom03g00830 pycom11g00700
rosa_chinensis	RchiOBHm_Chr5g0081561
rosa_laevigata	RLG00000036948
rosa_multiflora	Rmu_co8404245.1_g000001 Rmu_sc0002706.1_g000005
rosa_roxburghii	Rroxscaffold_1G00001990
rosa_rugosa	Rorug05G0477300 Rorug05G0477300
rosa_samantha	Rh5AG528700 Rh5BG553400 Rh5CG576300 Rh5DG563600
rosa_wichuraiana	Rw5G049190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	435, 563
AccIII	TCCGGA	1 cut(s)	556
AciI	CCGC	2 cut(s)	339, 433
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	2 cut(s)	538, 634
AcuI	CTGAAG	1 cut(s)	615
AdeI	CACNNNGTG	1 cut(s)	754
AfaI	GTAC	4 cut(s)	295, 332, 504, 652
AfiI	CCNNNNNNNGG	4 cut(s)	283, 335, 427, 449
AflIII	ACRYGT	1 cut(s)	521
AgsI	TTSAA	4 cut(s)	59, 481, 538, 584
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	2 cut(s)	264, 304
AluI	AGCT	2 cut(s)	264, 304
AlwI	GGATC	1 cut(s)	434
Aor13HI	TCCGGA	1 cut(s)	556
AoxI	GGCC	2 cut(s)	155, 451
ApeKI	GCWGC	3 cut(s)	83, 261, 264
ApoI	RAATTY	2 cut(s)	538, 634
Asp700I	GAANNNNTTC	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	156, 430
AsuC2I	CCSGG	2 cut(s)	154, 575
AsuHPI	GGTGA	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	430
BarI	GAAGNNNNNNTAC	2 cut(s)	595, 627
BbsI	GAAGAC	1 cut(s)	317
BbvI	GCAGC	3 cut(s)	95, 251, 273
BccI	CCATC	4 cut(s)	169, 553, 668, 694
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	428
BcnI	CCSGG	2 cut(s)	154, 575
BfaI	CTAG	3 cut(s)	248, 305, 489
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	3 cut(s)	84, 262, 265
BlsI	GCNGC	3 cut(s)	85, 263, 266
Bme1390I	CCNGG	3 cut(s)	154, 278, 575
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	2 cut(s)	156, 430
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	3 cut(s)	154, 278, 575
BmsI	GCATC	3 cut(s)	7, 334, 702
BpiI	GAAGAC	1 cut(s)	317
BpuEI	CTTGAG	2 cut(s)	440, 645
BpuMI	CCSGG	2 cut(s)	154, 575
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 335, 427, 449
BseAI	TCCGGA	1 cut(s)	556
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	4 cut(s)	283, 335, 427, 449
BseXI	GCAGC	3 cut(s)	95, 251, 273
BsgI	GTGCAG	3 cut(s)	163, 233, 413
Bsh1236I	CGCG	2 cut(s)	435, 563
BshFI	GGCC	2 cut(s)	157, 453
BsiSI	CCGG	3 cut(s)	154, 557, 574
BsiWI	CGTACG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	736
BslI	CCNNNNNNNGG	4 cut(s)	283, 335, 427, 449
BsmFI	GGGAC	1 cut(s)	736
BsnI	GGCC	2 cut(s)	157, 453
Bsp13I	TCCGGA	1 cut(s)	556
Bsp1407I	TGTACA	1 cut(s)	293
Bsp143I	GATC	3 cut(s)	439, 459, 529
BspACI	CCGC	2 cut(s)	339, 433
BspANI	GGCC	2 cut(s)	157, 453
BspEI	TCCGGA	1 cut(s)	556
BspFNI	CGCG	2 cut(s)	435, 563
BspLI	GGNNCC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	434
BspQI	GCTCTTC	1 cut(s)	392
BsrGI	TGTACA	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	3 cut(s)	439, 459, 529
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	655
Bst6I	CTCTTC	1 cut(s)	392
BstAPI	GCANNNNNTGC	1 cut(s)	408
BstAUI	TGTACA	1 cut(s)	293
BstC8I	GCNNGC	3 cut(s)	22, 216, 315
BstDEI	CTNAG	1 cut(s)	361
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	2 cut(s)	435, 563
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	3 cut(s)	442, 462, 532
BstMBI	GATC	3 cut(s)	439, 459, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	310, 408
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	2 cut(s)	228, 525
BstSCI	CCNGG	3 cut(s)	152, 276, 573
BstUI	CGCG	2 cut(s)	435, 563
BstV1I	GCAGC	3 cut(s)	95, 251, 273
BstV2I	GAAGAC	1 cut(s)	317
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	2 cut(s)	157, 453
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	2 cut(s)	379, 652
BtsIMutI	CAGTG	2 cut(s)	379, 652
Cac8I	GCNNGC	3 cut(s)	22, 216, 315
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	156, 430
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	4 cut(s)	294, 331, 503, 651
CviAII	CATG	4 cut(s)	187, 225, 500, 522
CviJI	RGCY	7 cut(s)	86, 157, 264, 304, 313, 453, 685
CviKI_1	RGCY	7 cut(s)	86, 157, 264, 304, 313, 453, 685
CviQI	GTAC	4 cut(s)	294, 331, 503, 651
DdeI	CTNAG	1 cut(s)	361
DpnI	GATC	3 cut(s)	441, 461, 531
DpnII	GATC	3 cut(s)	439, 459, 529
DraIII	CACNNNGTG	1 cut(s)	754
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	615
EcoNI	CCTNNNNNAGG	1 cut(s)	425
EcoRI	GAATTC	1 cut(s)	634
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	4 cut(s)	190, 228, 503, 525
FaqI	GGGAC	1 cut(s)	736
FatI	CATG	4 cut(s)	186, 224, 499, 521
Fnu4HI	GCNGC	3 cut(s)	84, 262, 265
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	84, 262, 265
FspBI	CTAG	3 cut(s)	248, 305, 489
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	3 cut(s)	84, 262, 265
HaeIII	GGCC	2 cut(s)	157, 453
HapII	CCGG	3 cut(s)	154, 557, 574
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	4 cut(s)	190, 228, 503, 525
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	1 cut(s)	724
HpaII	CCGG	3 cut(s)	154, 557, 574
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	1 cut(s)	444
Hpy188III	TCNNGA	3 cut(s)	457, 535, 557
Hpy8I	GTNNAC	1 cut(s)	511
Hpy99I	CGWCG	2 cut(s)	338, 440
HpyAV	CCTTC	2 cut(s)	65, 494
HpyCH4III	ACNGT	1 cut(s)	655
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	6 cut(s)	24, 180, 214, 267, 372, 394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	310, 408
HpyF3I	CTNAG	1 cut(s)	361
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	4 cut(s)	190, 228, 503, 525
HspAI	GCGC	1 cut(s)	228
Kpn2I	TCCGGA	1 cut(s)	556
Kzo9I	GATC	3 cut(s)	439, 459, 529
LguI	GCTCTTC	1 cut(s)	392
Lsp1109I	GCAGC	3 cut(s)	95, 251, 273
LweI	GCATC	3 cut(s)	7, 334, 702
MaeI	CTAG	3 cut(s)	248, 305, 489
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	3 cut(s)	441, 461, 531
MboI	GATC	3 cut(s)	439, 459, 529
MboII	GAAGA	5 cut(s)	26, 133, 317, 409, 577
MluCI	AATT	5 cut(s)	27, 378, 463, 538, 634
MlyI	GAGTC	1 cut(s)	718
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	3 cut(s)	422, 464, 675
MroI	TCCGGA	1 cut(s)	556
MroXI	GAANNNNTTC	1 cut(s)	569
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	2 cut(s)	185, 223
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	3 cut(s)	154, 557, 574
MspR9I	CCNGG	3 cut(s)	154, 278, 575
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	2 cut(s)	435, 563
MwoI	GCNNNNNNNGC	2 cut(s)	310, 408
NciI	CCSGG	2 cut(s)	154, 575
NdeII	GATC	3 cut(s)	439, 459, 529
NlaIII	CATG	4 cut(s)	190, 228, 503, 525
NlaIV	GGNNCC	1 cut(s)	158
NmeAIII	GCCGAG	1 cut(s)	429
NspI	RCATGY	2 cut(s)	228, 525
PciI	ACATGT	1 cut(s)	521
PciSI	GCTCTTC	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	569
Pfl23II	CGTACG	1 cut(s)	330
PfoI	TCCNGGA	1 cut(s)	573
PkrI	GCNGC	3 cut(s)	85, 263, 266
PleI	GAGTC	1 cut(s)	718
PpsI	GAGTC	1 cut(s)	718
PscI	ACATGT	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspLI	CGTACG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	2 cut(s)	156, 430
PvuII	CAGCTG	1 cut(s)	264
RsaI	GTAC	4 cut(s)	295, 332, 504, 652
RsaNI	GTAC	4 cut(s)	294, 331, 503, 651
RseI	CAYNNNNRTG	2 cut(s)	185, 223
SapI	GCTCTTC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	3 cut(s)	84, 262, 265
Sau3AI	GATC	3 cut(s)	439, 459, 529
Sau96I	GGNCC	2 cut(s)	156, 430
SchI	GAGTC	1 cut(s)	718
ScrFI	CCNGG	3 cut(s)	154, 278, 575
SetI	ASST	7 cut(s)	57, 266, 306, 336, 362, 486, 508
SfaNI	GCATC	3 cut(s)	7, 334, 702
SinI	GGWCC	1 cut(s)	430
SmiMI	CAYNNNNRTG	2 cut(s)	185, 223
SmlI	CTYRAG	2 cut(s)	455, 660
SmoI	CTYRAG	2 cut(s)	455, 660
Sse9I	AATT	5 cut(s)	27, 378, 463, 538, 634
SsiI	CCGC	2 cut(s)	339, 433
SspMI	CTAG	3 cut(s)	248, 305, 489
StyD4I	CCNGG	3 cut(s)	152, 276, 573
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	655
TaiI	ACGT	1 cut(s)	336
TasI	AATT	5 cut(s)	27, 378, 463, 538, 634
TatI	WGTACW	1 cut(s)	293
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	2 cut(s)	379, 652
TseI	GCWGC	3 cut(s)	83, 261, 264
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	379, 652
VpaK11BI	GGWCC	1 cut(s)	430
XagI	CCTNNNNNAGG	1 cut(s)	425
XapI	RAATTY	2 cut(s)	538, 634
XceI	RCATGY	2 cut(s)	228, 525
XmnI	GAANNNNTTC	1 cut(s)	569
XspI	CTAG	3 cut(s)	248, 305, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.