pycom11g01100

plastid-lipid-associated protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0007819
Physical Location & Seq
Forward (+)
868803 .. 871793
2991 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1236 bp
ATGGATAACTTCCTCTGCTTCTTCAATCTTTGGTCACCAATGGCGGCAGCAGCAGCAAATCTAACAAACCTGAGAAGCTTCCATTATTGGCGCCAAAAACCCACATTCTCACCATCGCCACCAACTCTTCCCTTCTACAGAAACTCTTCAGCTTCAAGTGCAGGCCGTACAAAGACGTTGACGAAAGTGTTGACTCAAGAAGAAGTTTCGTTTACGGAGCAAGAGAACTCTCTCGTCGAAGCCCTCATCGGAATCCAAGGCCGAGGCCGCTCTGCTTCTCCTCAGCAACTCACCGATGTTCAAAATGCTGTGAATGTTCTTGAAGGTTTACAAGGCGTTCCTGACCCGACAAGTTCTAGTTTAATTGAAGGGCGCTGGCAATTGATGTTTACTACAAGACCTGGAACTGCCTCTCCAATCCAAAGGACGTTTGTGGGGGTTGACTTCTTTAGCGTATTTCAAGAGGTATATCTTCGGACAAGTGATCCACGCGTATCGAATATCGTCAAATTCTCTGATGCAGTAGGTGAACTAAAAGTAGAGGCAGCAGCATCAATACAAGATGGGAAACGAATCCTCTTTCAGTTTGATAAAGCAGCATTTTCTCTTAAATTTTTACCGTTTAAGGTTCCATATCCAGTTCCATTCAGACTTCTCGGAGATGAGGCAAAGGGCTGGTTGGATACCACATACTTGTCTGAATCTGGAAACCTTCGTATCTCAAGAGGAAATAAGGGAACTACATTTGTGCTGCAAAAGAAAACTGAACCTAGGCAAAGATTGCTGTCGACAATCTCCACGGGTACAGGAGTTAAAGAGGCAATCGATGAGTTCATCTCGTTAAATCAGAACATGGGTGATCTAGAGCTCCAAGACGGGGAGTGGGAAATGATATGGAGTTCACAGGAAGAGACAGATAGTTGGTTAGAGAATGCAGCCAATGGTCTAATGGGAAAGCAAATTGTCAAGAAAGATGGACAAATAAAGTTTGTGGTTGATACCTTACTTGGACTCAAATTCTCCATAACTGGCACATTCGTGAAAACTGGCAGCAGAACATATGATCTTACAATGGATGACGCGGCCATCATCGGTGGTCAGTTTGGGTATCCTGTAGAGCTAGAGAGCAAGTTCGAACTTGAGATACTGTATAGCGATGACAAGATCAGAATTACACGGGGGTATAGAAAAATCGTTTTCGTGTATTCACGAACAGATGGTGTTGAACAGAACTAA

Protein Analysis

412

Amino Acids

45.99

Weight (kDa)

5.6

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 75 - 251 1.1e-42 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 90
AccBSI CCGCTC 1 cut(s) 270
AccI GTMKAC 1 cut(s) 788
AccII CGCG 2 cut(s) 492, 1082
AciI CCGC 3 cut(s) 44, 268, 1082
AclWI GGATC 1 cut(s) 479
AcoI YGGCCR 1 cut(s) 1083
AcsI RAATTY 3 cut(s) 509, 611, 1016
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 91
AfaI GTAC 2 cut(s) 169, 805
AfiI CCNNNNNNNGG 1 cut(s) 877
AflIII ACRYGT 1 cut(s) 490
AgsI TTSAA 7 cut(s) 25, 156, 302, 323, 368, 461, 1226
AjnI CCWGG 1 cut(s) 400
AleI CACNNNNGTG 1 cut(s) 1037
AloI GAACNNNNNNTCC 2 cut(s) 397, 429
AluBI AGCT 4 cut(s) 78, 152, 868, 1120
AluI AGCT 4 cut(s) 78, 152, 868, 1120
Alw21I GWGCWC 1 cut(s) 870
Alw26I GTCTC 1 cut(s) 905
AlwI GGATC 1 cut(s) 479
AoxI GGCC 4 cut(s) 163, 259, 265, 1083
ApeKI GCWGC 9 cut(s) 47, 50, 53, 545, 548, 596, 751, 935, 1050
ApoI RAATTY 3 cut(s) 509, 611, 1016
Asp700I GAANNNNTTC 1 cut(s) 145
AspA2I CCTAGG 1 cut(s) 770
AspLEI GCGC 2 cut(s) 93, 375
AsuHPI GGTGA 5 cut(s) 27, 102, 283, 539, 869
AsuII TTCGAA 1 cut(s) 1134
AvrII CCTAGG 1 cut(s) 770
BaeI ACNNNNGTAYC 4 cut(s) 700, 733, 795, 828
BanI GGYRCC 1 cut(s) 90
BanII GRGCYC 1 cut(s) 870
Bbv12I GWGCWC 1 cut(s) 870
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 9 cut(s) 59, 62, 65, 557, 560, 608, 738, 947, 1062
BccI CCATC 5 cut(s) 121, 557, 968, 1094, 1211
BceAI ACGGC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 402
BciVI GTATCC 2 cut(s) 676, 1119
BcoDI GTCTC 1 cut(s) 905
BfaI CTAG 4 cut(s) 357, 771, 863, 1121
BfmI CTRYAG 2 cut(s) 136, 1113
BfoI RGCGCY 2 cut(s) 94, 376
BfuI GTATCC 2 cut(s) 676, 1119
BlnI CCTAGG 1 cut(s) 770
Bme1390I CCNGG 1 cut(s) 402
BmiI GGNNCC 2 cut(s) 92, 630
BmrFI CCNGG 1 cut(s) 402
BmsI GCATC 2 cut(s) 508, 560
BplI GAGNNNNNCTC 2 cut(s) 821, 853
Bpu10I CCTNAGC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 1134
BpuEI CTTGAG 3 cut(s) 180, 706, 1160
Bsa29I ATCGAT 1 cut(s) 825
BsaHI GRCGYC 1 cut(s) 91
BsaJI CCNNGG 4 cut(s) 256, 262, 770, 798
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 1 cut(s) 877
Bse1I ACTGG 3 cut(s) 638, 1033, 1051
BseBI CCWGG 1 cut(s) 402
BseCI ATCGAT 1 cut(s) 825
BseDI CCNNGG 4 cut(s) 256, 262, 770, 798
BseGI GGATG 1 cut(s) 1081
BseLI CCNNNNNNNGG 1 cut(s) 877
BseMII CTCAG 2 cut(s) 62, 296
BseNI ACTGG 3 cut(s) 638, 1033, 1051
BseRI GAGGAG 1 cut(s) 270
BseXI GCAGC 9 cut(s) 59, 62, 65, 557, 560, 608, 738, 947, 1062
BsgI GTGCAG 1 cut(s) 180
Bsh1236I CGCG 2 cut(s) 492, 1082
BshFI GGCC 4 cut(s) 165, 261, 267, 1085
BshNI GGYRCC 1 cut(s) 90
BshVI ATCGAT 1 cut(s) 825
BsiHKAI GWGCWC 1 cut(s) 870
BslI CCNNNNNNNGG 1 cut(s) 877
BsmAI GTCTC 1 cut(s) 905
BsmI GAATGC 1 cut(s) 937
BsnI GGCC 4 cut(s) 165, 261, 267, 1085
Bsp119I TTCGAA 1 cut(s) 1134
Bsp1286I GDGCHC 1 cut(s) 870
Bsp143I GATC 4 cut(s) 484, 859, 1063, 1164
BspACI CCGC 3 cut(s) 44, 268, 1082
BspANI GGCC 4 cut(s) 165, 261, 267, 1085
BspCNI CTCAG 2 cut(s) 63, 295
BspDI ATCGAT 1 cut(s) 825
BspFNI CGCG 2 cut(s) 492, 1082
BspLI GGNNCC 2 cut(s) 92, 630
BspPI GGATC 1 cut(s) 479
BspT104I TTCGAA 1 cut(s) 1134
BspT107I GGYRCC 1 cut(s) 90
BsrBI CCGCTC 1 cut(s) 270
BsrI ACTGG 3 cut(s) 638, 1033, 1051
BssECI CCNNGG 4 cut(s) 256, 262, 770, 798
BssMI GATC 4 cut(s) 484, 859, 1063, 1164
BssNI GRCGYC 1 cut(s) 91
BssT1I CCWWGG 2 cut(s) 256, 770
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 2 cut(s) 621, 1149
Bst6I CTCTTC 3 cut(s) 132, 151, 903
BstACI GRCGYC 1 cut(s) 91
BstAPI GCANNNNNTGC 1 cut(s) 781
BstBI TTCGAA 1 cut(s) 1134
BstC8I GCNNGC 2 cut(s) 163, 377
BstDEI CTNAG 2 cut(s) 71, 282
BstDSI CCRYGG 1 cut(s) 798
BstEII GGTNACC 1 cut(s) 33
BstF5I GGATG 1 cut(s) 1081
BstFNI CGCG 2 cut(s) 492, 1082
BstH2I RGCGCY 2 cut(s) 94, 376
BstHHI GCGC 2 cut(s) 93, 375
BstKTI GATC 4 cut(s) 487, 862, 1066, 1167
BstMAI GTCTC 1 cut(s) 905
BstMBI GATC 4 cut(s) 484, 859, 1063, 1164
BstMWI GCNNNNNNNGC 5 cut(s) 50, 53, 158, 267, 781
BstNI CCWGG 1 cut(s) 402
BstPI GGTNACC 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 400
BstSFI CTRYAG 2 cut(s) 136, 1113
BstUI CGCG 2 cut(s) 492, 1082
BstV1I GCAGC 9 cut(s) 59, 62, 65, 557, 560, 608, 738, 947, 1062
Bsu15I ATCGAT 1 cut(s) 825
BsuI GTATCC 2 cut(s) 676, 1119
BsuRI GGCC 4 cut(s) 165, 261, 267, 1085
BsuTUI ATCGAT 1 cut(s) 825
BtgI CCRYGG 1 cut(s) 798
BtgZI GCGATG 2 cut(s) 99, 1170
BtsCI GGATG 1 cut(s) 1081
Cac8I GCNNGC 2 cut(s) 163, 377
CfoI GCGC 2 cut(s) 93, 375
ClaI ATCGAT 1 cut(s) 825
CseI GACGC 1 cut(s) 1088
Csp6I GTAC 2 cut(s) 168, 804
CviAII CATG 1 cut(s) 853
CviQI GTAC 2 cut(s) 168, 804
DdeI CTNAG 2 cut(s) 71, 282
DinI GGCGCC 1 cut(s) 92
DpnI GATC 4 cut(s) 486, 861, 1065, 1166
DpnII GATC 4 cut(s) 484, 859, 1063, 1164
EaeI YGGCCR 1 cut(s) 1083
Eam1104I CTCTTC 3 cut(s) 132, 151, 903
EarI CTCTTC 3 cut(s) 132, 151, 903
Ecl136II GAGCTC 1 cut(s) 868
Eco130I CCWWGG 2 cut(s) 256, 770
Eco24I GRGCYC 1 cut(s) 870
Eco53kI GAGCTC 1 cut(s) 868
Eco57I CTGAAG 1 cut(s) 132
Eco91I GGTNACC 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 868
EcoO65I GGTNACC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 400
EcoT14I CCWWGG 2 cut(s) 256, 770
EcoT38I GRGCYC 1 cut(s) 870
EgeI GGCGCC 1 cut(s) 92
EheI GGCGCC 1 cut(s) 92
ErhI CCWWGG 2 cut(s) 256, 770
FaeI CATG 1 cut(s) 856
FatI CATG 1 cut(s) 852
FauNDI CATATG 1 cut(s) 1060
FblI GTMKAC 1 cut(s) 788
FokI GGATG 1 cut(s) 1088
FriOI GRGCYC 1 cut(s) 870
FspBI CTAG 4 cut(s) 357, 771, 863, 1121
GlaI GCGC 2 cut(s) 92, 374
HaeII RGCGCY 2 cut(s) 94, 376
HaeIII GGCC 4 cut(s) 165, 261, 267, 1085
HgaI GACGC 1 cut(s) 1088
HhaI GCGC 2 cut(s) 93, 375
Hin1I GRCGYC 1 cut(s) 91
Hin1II CATG 1 cut(s) 856
Hin6I GCGC 2 cut(s) 91, 373
HinP1I GCGC 2 cut(s) 91, 373
HincII GTYRAC 4 cut(s) 180, 192, 442, 789
HindII GTYRAC 4 cut(s) 180, 192, 442, 789
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 5 cut(s) 193, 252, 573, 701, 1011
HphI GGTGA 5 cut(s) 27, 102, 283, 539, 869
Hpy166II GTNNAC 9 cut(s) 180, 192, 213, 329, 390, 442, 530, 789, 902
Hpy188I TCNGA 8 cut(s) 251, 477, 517, 650, 659, 700, 849, 1169
Hpy8I GTNNAC 9 cut(s) 180, 192, 213, 329, 390, 442, 530, 789, 902
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 4 cut(s) 142, 317, 362, 722
HpyCH4III ACNGT 2 cut(s) 621, 1149
HpyCH4IV ACGT 2 cut(s) 176, 428
HpyCH4V TGCA 4 cut(s) 161, 521, 754, 935
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 53, 158, 267, 781
HpyF3I CTNAG 2 cut(s) 71, 282
HpySE526I ACGT 2 cut(s) 176, 428
Hsp92I GRCGYC 1 cut(s) 91
Hsp92II CATG 1 cut(s) 856
HspAI GCGC 2 cut(s) 91, 373
KasI GGCGCC 1 cut(s) 90
Kzo9I GATC 4 cut(s) 484, 859, 1063, 1164
LmnI GCTCC 2 cut(s) 217, 873
Lsp1109I GCAGC 9 cut(s) 59, 62, 65, 557, 560, 608, 738, 947, 1062
LweI GCATC 2 cut(s) 508, 560
MaeI CTAG 4 cut(s) 357, 771, 863, 1121
MaeII ACGT 2 cut(s) 176, 428
MaeIII GTNAC 1 cut(s) 33
MalI GATC 4 cut(s) 486, 861, 1065, 1166
MbiI CCGCTC 1 cut(s) 270
MboI GATC 4 cut(s) 484, 859, 1063, 1164
MboII GAAGA 6 cut(s) 13, 119, 138, 212, 464, 920
MfeI CAATTG 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 870
MluCI AATT 7 cut(s) 363, 380, 509, 611, 960, 1016, 1170
MluI ACGCGT 1 cut(s) 490
Mly113I GGCGCC 1 cut(s) 91
MlyI GAGTC 2 cut(s) 187, 1005
MmeI TCCRAC 1 cut(s) 660
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 5 cut(s) 362, 609, 624, 813, 842
MslI CAYNNNNRTG 1 cut(s) 1037
MspR9I CCNGG 1 cut(s) 402
MunI CAATTG 1 cut(s) 380
Mva1269I GAATGC 1 cut(s) 937
MvaI CCWGG 1 cut(s) 402
MvnI CGCG 2 cut(s) 492, 1082
MwoI GCNNNNNNNGC 5 cut(s) 50, 53, 158, 267, 781
NarI GGCGCC 1 cut(s) 91
NdeI CATATG 1 cut(s) 1060
NdeII GATC 4 cut(s) 484, 859, 1063, 1164
NlaIII CATG 1 cut(s) 856
NlaIV GGNNCC 2 cut(s) 92, 630
NmeAIII GCCGAG 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 33
NspV TTCGAA 1 cut(s) 1134
OliI CACNNNNGTG 1 cut(s) 1037
PctI GAATGC 1 cut(s) 937
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 3 cut(s) 252, 573, 701
PleI GAGTC 2 cut(s) 187, 1005
PluTI GGCGCC 1 cut(s) 94
PpsI GAGTC 2 cut(s) 187, 1005
Psp124BI GAGCTC 1 cut(s) 870
Psp6I CCWGG 1 cut(s) 400
PspEI GGTNACC 1 cut(s) 33
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 2 cut(s) 92, 630
PsrI GAACNNNNNNTAC 2 cut(s) 1128, 1160
RsaI GTAC 2 cut(s) 169, 805
RsaNI GTAC 2 cut(s) 168, 804
RseI CAYNNNNRTG 1 cut(s) 1037
SacI GAGCTC 1 cut(s) 870
SalI GTCGAC 1 cut(s) 787
SaqAI TTAA 5 cut(s) 362, 609, 624, 813, 842
Sau3AI GATC 4 cut(s) 484, 859, 1063, 1164
SchI GAGTC 2 cut(s) 187, 1005
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 1 cut(s) 870
SfaNI GCATC 2 cut(s) 508, 560
SfcI CTRYAG 2 cut(s) 136, 1113
SfoI GGCGCC 1 cut(s) 92
SfuI TTCGAA 1 cut(s) 1134
SmiMI CAYNNNNRTG 1 cut(s) 1037
SmlI CTYRAG 3 cut(s) 195, 721, 1139
SmoI CTYRAG 3 cut(s) 195, 721, 1139
Sse9I AATT 7 cut(s) 363, 380, 509, 611, 960, 1016, 1170
SsiI CCGC 3 cut(s) 44, 268, 1082
SspDI GGCGCC 1 cut(s) 90
SspMI CTAG 4 cut(s) 357, 771, 863, 1121
SstI GAGCTC 1 cut(s) 870
StyD4I CCNGG 1 cut(s) 400
StyI CCWWGG 2 cut(s) 256, 770
TaaI ACNGT 2 cut(s) 621, 1149
TaiI ACGT 2 cut(s) 179, 431
TaqI TCGA 5 cut(s) 237, 497, 788, 825, 1134
TasI AATT 7 cut(s) 363, 380, 509, 611, 960, 1016, 1170
TauI GCSGC 3 cut(s) 47, 270, 1085
TfiI GAWTC 3 cut(s) 252, 573, 701
Tru1I TTAA 5 cut(s) 362, 609, 624, 813, 842
Tru9I TTAA 5 cut(s) 362, 609, 624, 813, 842
TseFI GTSAC 1 cut(s) 33
TseI GCWGC 9 cut(s) 47, 50, 53, 545, 548, 596, 751, 935, 1050
Tsp45I GTSAC 1 cut(s) 33
TspDTI ATGAA 1 cut(s) 823
TspGWI ACGGA 1 cut(s) 230
XapI RAATTY 3 cut(s) 509, 611, 1016
XbaI TCTAGA 1 cut(s) 862
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XmaJI CCTAGG 1 cut(s) 770
XmiI GTMKAC 1 cut(s) 788
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 4 cut(s) 357, 771, 863, 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.