pycom11g02970

membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010952
Physical Location & Seq
Reverse (-)
2346431 .. 2348942
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1092 bp
ATGCAGGAGAAGCAGGTCGAGCGCTCGAAGAACTCCGAGGCTCTATCTACAATGACCTCCGAACATCAGAAGGCGCCAAGCGCCAACAGCAGCGTTTTTGTGGTCCGGTTGTGGCTATGTCCTTCAATTTCACAGTCTCTGTGGGGATCGATCCTTGCAAACAAACTAATAATGGGGAGAGTTGGATTTAAGTTCCCAATCTTTCTCACATTGATCCATTATGTGACAGCATGGCTGCTTCTCGCCATTTTCAAGTCGCTCTCAATTCTTCCTGTTGCTCCTCCTTCGAGAACCACTCCTTTCACTTCTCTCTTCTCCTTAGGCGCGGTCATGGCTTTTGCATCCGGTCTTGCAAACACCAGCCTAAAACATAACAGTGTTGGCTTCTACCAGATGGCTAAAATTGCTGTCACTCCAACTATTGTTTTCGCCGAGTTCATTCTCTTCAGAAAAACCATTTCTTTTAACAAGGTTTTGGCTCTAGCTGTAGTCTCGGCGGGTGTGGCAGTAGCAACTGTAACAGATTTAGAGTTCAATTTATTTGGTGCTTTGATTGCAATTGCATGGATAGTCCCAAGTGCTGTAAACAAAATCTTATGGTCTAACCTTCAGCAGCAAGGCAATTGGACCGCGCTTGCGCTGATGTGGAAGACAACCCCGGTCACGATATTCTTCTTGCTGGCTCTGATGCCTTGGTTGGATCCACCAGGCGTCCTACTTTTCAAGTGGAATTTCAGTAACTCAACCGCTATTCTTACATCGGCAGTCCTTGGTTTTCTCCTCCAATGGTCCGGAGCTTTGGCACTCGGGGCAACCTCAGCAACTTCCCACGTTGTTCTAGGGCAGTTCAAGACTTGTGTTATACTACTAGGGGGCTACCTTATATTTAACTCGGATCCGGGCTTTGTGAGCATTTGCGGGGCTGTCGCAGCTCTCTGCGGAATGTCTGTTTACACGTCGCTAAACCTGAAAAAGCCGCAAGACAGCACGAGCAAACAGCTCCCAAAGCAAAGCTTACCGACGTCAAAACCCAAAGCCACTGACGGAGAAAGTGTAGAGTCAGAAGTAGAAGATACTGCAACTGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

364

Amino Acids

39.13

Weight (kDa)

9.43

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 52 - 318 5.3e-14 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55950 AT5G55950 AT5G55950 AT5G55950
fragaria_vesca FvH4_3g42500 FvH4_3g42500
malus_domestica MD11G1035900.v1.1
prunus_persica Prupe.6G026800_v2.0.a1 Prupe.6G026800_v2.0.a1
pyrus_communis pycom11g02970
rosa_chinensis RchiOBHm_Chr5g0076161
rosa_laevigata RLG00000036606
rosa_multiflora Rmu_ssc0000123.1_g000002
rosa_roxburghii Rroxscaffold_1G00005650
rosa_rugosa Rorug05G0445200
rosa_samantha Rh5AG501300 Rh5BG522800 Rh5CG546600 Rh5DG535200
rosa_wichuraiana Rw5G046530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1025
Acc36I ACCTGC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 73
AccII CGCG 2 cut(s) 326, 632
AccIII TCCGGA 1 cut(s) 791
AciI CCGC 7 cut(s) 326, 497, 630, 747, 918, 939, 977
AclWI GGATC 7 cut(s) 145, 154, 208, 695, 708, 890, 903
AcsI RAATTY 1 cut(s) 730
AcuI CTGAAG 2 cut(s) 430, 593
AcyI GRCGYC 3 cut(s) 74, 711, 1022
AfeI AGCGCT 1 cut(s) 23
AflIII ACRYGT 1 cut(s) 954
AgsI TTSAA 5 cut(s) 126, 253, 535, 724, 850
AjiI CACGTC 1 cut(s) 957
AjnI CCWGG 1 cut(s) 706
AluBI AGCT 5 cut(s) 485, 797, 932, 1000, 1014
AluI AGCT 5 cut(s) 485, 797, 932, 1000, 1014
Alw26I GTCTC 2 cut(s) 141, 496
AlwI GGATC 7 cut(s) 145, 154, 208, 695, 708, 890, 903
AlwNI CAGNNNCTG 1 cut(s) 139
Ama87I CYCGRG 1 cut(s) 806
Aor13HI TCCGGA 1 cut(s) 791
Aor51HI AGCGCT 1 cut(s) 23
ApeKI GCWGC 4 cut(s) 90, 235, 613, 929
ApoI RAATTY 1 cut(s) 730
AspLEI GCGC 6 cut(s) 24, 76, 83, 326, 634, 640
AspS9I GGNCC 3 cut(s) 103, 627, 789
AsuC2I CCSGG 2 cut(s) 659, 900
AvaI CYCGRG 1 cut(s) 806
AvaII GGWCC 3 cut(s) 103, 627, 789
AxyI CCTNAGG 1 cut(s) 319
BamHI GGATCC 2 cut(s) 700, 895
BanI GGYRCC 1 cut(s) 73
BauI CACGAG 1 cut(s) 988
BbsI GAAGAC 1 cut(s) 656
BbvCI CCTCAGC 1 cut(s) 817
BbvI GCAGC 4 cut(s) 102, 222, 625, 941
BccI CCATC 1 cut(s) 388
BciT130I CCWGG 1 cut(s) 708
BcnI CCSGG 2 cut(s) 659, 900
BcoDI GTCTC 2 cut(s) 141, 496
BfaI CTAG 3 cut(s) 482, 839, 869
BfmI CTRYAG 1 cut(s) 486
BfoI RGCGCY 3 cut(s) 25, 77, 84
BfuAI ACCTGC 1 cut(s) 4
BisI GCNGC 5 cut(s) 91, 236, 614, 930, 977
BlsI GCNGC 5 cut(s) 92, 237, 615, 931, 978
Bme1390I CCNGG 3 cut(s) 659, 708, 900
Bme18I GGWCC 3 cut(s) 103, 627, 789
BmeT110I CYCGRG 1 cut(s) 806
BmgBI CACGTC 1 cut(s) 957
BmgT120I GGNCC 3 cut(s) 103, 627, 789
BmiI GGNNCC 3 cut(s) 75, 702, 897
BmrFI CCNGG 3 cut(s) 659, 708, 900
BmsI GCATC 2 cut(s) 350, 678
BpiI GAAGAC 1 cut(s) 656
BplI GAGNNNNNCTC 2 cut(s) 280, 312
Bpu10I CCTNAGC 1 cut(s) 817
BpuMI CCSGG 2 cut(s) 659, 900
Bsa29I ATCGAT 1 cut(s) 149
BsaHI GRCGYC 3 cut(s) 74, 711, 1022
BsaJI CCNNGG 4 cut(s) 36, 657, 692, 769
BsaWI WCCGGW 3 cut(s) 105, 344, 791
BsaXI ACNNNNNCTCC 2 cut(s) 1038, 1068
Bse21I CCTNAGG 1 cut(s) 319
BseAI TCCGGA 1 cut(s) 791
BseBI CCWGG 1 cut(s) 708
BseCI ATCGAT 1 cut(s) 149
BseDI CCNNGG 4 cut(s) 36, 657, 692, 769
BseGI GGATG 1 cut(s) 341
BseMII CTCAG 1 cut(s) 831
BseRI GAGGAG 2 cut(s) 270, 770
BseXI GCAGC 4 cut(s) 102, 222, 625, 941
Bsh1236I CGCG 2 cut(s) 326, 632
BshNI GGYRCC 1 cut(s) 73
BshVI ATCGAT 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 806
BsiSI CCGG 5 cut(s) 106, 345, 659, 792, 899
BslFI GGGAC 1 cut(s) 557
BsmAI GTCTC 2 cut(s) 141, 496
BsmFI GGGAC 1 cut(s) 557
BsoBI CYCGRG 1 cut(s) 806
Bsp13I TCCGGA 1 cut(s) 791
Bsp143I GATC 5 cut(s) 146, 150, 213, 700, 895
BspACI CCGC 7 cut(s) 326, 497, 630, 747, 918, 939, 977
BspCNI CTCAG 1 cut(s) 830
BspDI ATCGAT 1 cut(s) 149
BspEI TCCGGA 1 cut(s) 791
BspFNI CGCG 2 cut(s) 326, 632
BspLI GGNNCC 3 cut(s) 75, 702, 897
BspMI ACCTGC 1 cut(s) 4
BspPI GGATC 7 cut(s) 145, 154, 208, 695, 708, 890, 903
BspT107I GGYRCC 1 cut(s) 73
BssECI CCNNGG 4 cut(s) 36, 657, 692, 769
BssMI GATC 5 cut(s) 146, 150, 213, 700, 895
BssNI GRCGYC 3 cut(s) 74, 711, 1022
BssSI CACGAG 1 cut(s) 988
BssT1I CCWWGG 2 cut(s) 692, 769
Bst2BI CACGAG 1 cut(s) 988
Bst2UI CCWGG 1 cut(s) 708
Bst4CI ACNGT 4 cut(s) 135, 377, 517, 1084
Bst6I CTCTTC 2 cut(s) 317, 449
BstACI GRCGYC 3 cut(s) 74, 711, 1022
BstC8I GCNNGC 2 cut(s) 636, 681
BstDEI CTNAG 2 cut(s) 319, 817
BstF5I GGATG 1 cut(s) 341
BstFNI CGCG 2 cut(s) 326, 632
BstH2I RGCGCY 3 cut(s) 25, 77, 84
BstHHI GCGC 6 cut(s) 24, 76, 83, 326, 634, 640
BstKTI GATC 5 cut(s) 149, 153, 216, 703, 898
BstMAI GTCTC 2 cut(s) 141, 496
BstMBI GATC 5 cut(s) 146, 150, 213, 700, 895
BstNI CCWGG 1 cut(s) 708
BstSCI CCNGG 3 cut(s) 657, 706, 898
BstSFI CTRYAG 1 cut(s) 486
BstUI CGCG 2 cut(s) 326, 632
BstV1I GCAGC 4 cut(s) 102, 222, 625, 941
BstV2I GAAGAC 1 cut(s) 656
BstX2I RGATCY 2 cut(s) 700, 895
BstYI RGATCY 2 cut(s) 700, 895
Bsu15I ATCGAT 1 cut(s) 149
Bsu36I CCTNAGG 1 cut(s) 319
BsuTUI ATCGAT 1 cut(s) 149
BtrI CACGTC 1 cut(s) 957
BtsCI GGATG 1 cut(s) 341
BtsIMutI CAGTG 2 cut(s) 382, 1038
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 2 cut(s) 636, 681
CaiI CAGNNNCTG 1 cut(s) 139
CfoI GCGC 6 cut(s) 24, 76, 83, 326, 634, 640
Cfr13I GGNCC 3 cut(s) 103, 627, 789
ClaI ATCGAT 1 cut(s) 149
CseI GACGC 1 cut(s) 700
CviAII CATG 3 cut(s) 231, 331, 564
DdeI CTNAG 2 cut(s) 319, 817
DinI GGCGCC 1 cut(s) 75
DpnI GATC 5 cut(s) 148, 152, 215, 702, 897
DpnII GATC 5 cut(s) 146, 150, 213, 700, 895
Eam1104I CTCTTC 2 cut(s) 317, 449
EarI CTCTTC 2 cut(s) 317, 449
Eco130I CCWWGG 2 cut(s) 692, 769
Eco47I GGWCC 3 cut(s) 103, 627, 789
Eco47III AGCGCT 1 cut(s) 23
Eco57I CTGAAG 2 cut(s) 430, 593
Eco81I CCTNAGG 1 cut(s) 319
Eco88I CYCGRG 1 cut(s) 806
EcoRII CCWGG 1 cut(s) 706
EcoT14I CCWWGG 2 cut(s) 692, 769
EgeI GGCGCC 1 cut(s) 75
EheI GGCGCC 1 cut(s) 75
ErhI CCWWGG 2 cut(s) 692, 769
FaeI CATG 3 cut(s) 234, 334, 567
FaiI YATR 9 cut(s) 118, 222, 232, 332, 372, 565, 598, 863, 884
FalI AAGNNNNNCTT 2 cut(s) 998, 1030
FaqI GGGAC 1 cut(s) 557
FatI CATG 3 cut(s) 230, 330, 563
FauI CCCGC 2 cut(s) 490, 911
Fnu4HI GCNGC 5 cut(s) 91, 236, 614, 930, 977
FokI GGATG 1 cut(s) 328
Fsp4HI GCNGC 5 cut(s) 91, 236, 614, 930, 977
FspBI CTAG 3 cut(s) 482, 839, 869
GlaI GCGC 6 cut(s) 23, 75, 82, 325, 633, 639
GluI GCNGC 5 cut(s) 91, 236, 614, 930, 977
HaeII RGCGCY 3 cut(s) 25, 77, 84
HapII CCGG 5 cut(s) 106, 345, 659, 792, 899
HgaI GACGC 1 cut(s) 700
HhaI GCGC 6 cut(s) 24, 76, 83, 326, 634, 640
Hin1I GRCGYC 3 cut(s) 74, 711, 1022
Hin1II CATG 3 cut(s) 234, 334, 567
Hin6I GCGC 6 cut(s) 22, 74, 81, 324, 632, 638
HinP1I GCGC 6 cut(s) 22, 74, 81, 324, 632, 638
HindIII AAGCTT 1 cut(s) 1012
HinfI GANTC 1 cut(s) 1058
HpaII CCGG 5 cut(s) 106, 345, 659, 792, 899
Hpy166II GTNNAC 2 cut(s) 586, 952
Hpy188I TCNGA 8 cut(s) 37, 61, 69, 449, 687, 895, 1063, 1091
Hpy188III TCNNGA 4 cut(s) 288, 664, 792, 850
Hpy8I GTNNAC 2 cut(s) 586, 952
Hpy99I CGWCG 2 cut(s) 961, 1024
HpyAV CCTTC 4 cut(s) 64, 132, 294, 617
HpyCH4III ACNGT 4 cut(s) 135, 377, 517, 1084
HpyCH4IV ACGT 3 cut(s) 831, 956, 1022
HpyCH4V TGCA 7 cut(s) 4, 158, 341, 353, 557, 563, 1079
HpyF3I CTNAG 2 cut(s) 319, 817
HpySE526I ACGT 3 cut(s) 831, 956, 1022
Hsp92I GRCGYC 3 cut(s) 74, 711, 1022
Hsp92II CATG 3 cut(s) 234, 334, 567
HspAI GCGC 6 cut(s) 22, 74, 81, 324, 632, 638
KasI GGCGCC 1 cut(s) 73
Kpn2I TCCGGA 1 cut(s) 791
Kzo9I GATC 5 cut(s) 146, 150, 213, 700, 895
LmnI GCTCC 3 cut(s) 283, 794, 1005
Lsp1109I GCAGC 4 cut(s) 102, 222, 625, 941
LweI GCATC 2 cut(s) 350, 678
MaeI CTAG 3 cut(s) 482, 839, 869
MaeII ACGT 3 cut(s) 831, 956, 1022
MaeIII GTNAC 5 cut(s) 223, 409, 517, 661, 737
MalI GATC 5 cut(s) 148, 152, 215, 702, 897
MboI GATC 5 cut(s) 146, 150, 213, 700, 895
MboII GAAGA 7 cut(s) 40, 260, 304, 436, 661, 664, 1082
MfeI CAATTG 2 cut(s) 558, 622
MflI RGATCY 2 cut(s) 700, 895
MluCI AATT 7 cut(s) 126, 264, 402, 535, 558, 622, 730
Mly113I GGCGCC 1 cut(s) 74
MlyI GAGTC 1 cut(s) 1067
MmeI TCCRAC 3 cut(s) 163, 440, 678
MnlI CCTC 5 cut(s) 31, 67, 291, 791, 826
MroI TCCGGA 1 cut(s) 791
MseI TTAA 3 cut(s) 189, 465, 888
MslI CAYNNNNRTG 1 cut(s) 375
MspI CCGG 5 cut(s) 106, 345, 659, 792, 899
MspR9I CCNGG 3 cut(s) 659, 708, 900
MunI CAATTG 2 cut(s) 558, 622
MvaI CCWGG 1 cut(s) 708
MvnI CGCG 2 cut(s) 326, 632
NarI GGCGCC 1 cut(s) 74
NciI CCSGG 2 cut(s) 659, 900
NdeII GATC 5 cut(s) 146, 150, 213, 700, 895
NlaIII CATG 3 cut(s) 234, 334, 567
NlaIV GGNNCC 3 cut(s) 75, 702, 897
NmeAIII GCCGAG 2 cut(s) 457, 473
NmuCI GTSAC 3 cut(s) 223, 409, 661
PkrI GCNGC 5 cut(s) 92, 237, 615, 931, 978
PleI GAGTC 1 cut(s) 1066
PluTI GGCGCC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 1066
Psp6I CCWGG 1 cut(s) 706
PspGI CCWGG 1 cut(s) 706
PspN4I GGNNCC 3 cut(s) 75, 702, 897
PspPI GGNCC 3 cut(s) 103, 627, 789
PstNI CAGNNNCTG 1 cut(s) 139
PsuI RGATCY 2 cut(s) 700, 895
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 3 cut(s) 189, 465, 888
SatI GCNGC 5 cut(s) 91, 236, 614, 930, 977
Sau3AI GATC 5 cut(s) 146, 150, 213, 700, 895
Sau96I GGNCC 3 cut(s) 103, 627, 789
SchI GAGTC 1 cut(s) 1067
ScrFI CCNGG 3 cut(s) 659, 708, 900
SfaNI GCATC 2 cut(s) 350, 678
SfcI CTRYAG 1 cut(s) 486
SfoI GGCGCC 1 cut(s) 75
SinI GGWCC 3 cut(s) 103, 627, 789
SmiMI CAYNNNNRTG 1 cut(s) 375
Sse9I AATT 7 cut(s) 126, 264, 402, 535, 558, 622, 730
SsiI CCGC 7 cut(s) 326, 497, 630, 747, 918, 939, 977
SspDI GGCGCC 1 cut(s) 73
SspMI CTAG 3 cut(s) 482, 839, 869
StyD4I CCNGG 3 cut(s) 657, 706, 898
StyI CCWWGG 2 cut(s) 692, 769
TaaI ACNGT 4 cut(s) 135, 377, 517, 1084
TaiI ACGT 3 cut(s) 834, 959, 1025
TaqI TCGA 4 cut(s) 18, 26, 149, 287
TasI AATT 7 cut(s) 126, 264, 402, 535, 558, 622, 730
TauI GCSGC 1 cut(s) 979
Tru1I TTAA 3 cut(s) 189, 465, 888
Tru9I TTAA 3 cut(s) 189, 465, 888
TscAI CASTG 2 cut(s) 382, 1045
TseFI GTSAC 3 cut(s) 223, 409, 661
TseI GCWGC 4 cut(s) 90, 235, 613, 929
Tsp45I GTSAC 3 cut(s) 223, 409, 661
TspDTI ATGAA 1 cut(s) 427
TspGWI ACGGA 1 cut(s) 1059
TspRI CASTG 2 cut(s) 382, 1045
VpaK11BI GGWCC 3 cut(s) 103, 627, 789
XapI RAATTY 1 cut(s) 730
XspI CTAG 3 cut(s) 482, 839, 869
ZraI GACGTC 1 cut(s) 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.