Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006119

Physical Location & Seq

Genomic Coordinates Reverse (-)

2403318 .. 2407760

Gene Structure 4443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2697 bp

ATGATGAACATGGAGACGAAACTAAATCTAAAGGCCATGCTGGGTTACCCAATTCACCATCTTCTTCAGCAGAAACCACAAAATCCGCTGCTATTACTTGGGCAGTATAGTGATGACGAGTTGGATGATGATTCAAATCATAGCAATGCTTCTGTAGAAAATTCTTCCCCTGACAAAAATGATGAGGTTAAGAGTTCGCTTGGTGAATCTCATCAGCATTTGGATTTCAATGCTAGTGAAGACCTTGCTTCTCAGAAGGTTGAGAAACAGGGAGGTAATACAAATTCTGCCCGGCAAGATTGTGACAAGAACATGGAGGACAATGATCAAAGAGAAAATGATGATATCGTCTCTAGTGATTTACGTACAGAATCTGATTTGATTGAACAAATCTCTGTTCCTGAAACCTCTAGTGTACAAGTCATTGGAGATGTTAGTTCAGGTTGGAAGATTGTAATGCATGAAGAGAGTAATAGCTATTATTACTGGAATACTGAAACTGGCGAAACTTCATGGGAAGTCCCTGATGTTTTAGCCCTGGAAACAAAGTTCGGTGACCAGGAAATGGCTACTACTGCTGGAACAACAGATAATGTTCCTGTTGGTACAGAAGGGTCTAGCGCTTCTGATGTGAAGTTAGATGGTTTCTCTAATTCTGTCACAGTTGAAGGGGGTGCCAATGTAATCCATCATGGAATAGAATCGCATGGGCATGGGTCCCAAGTGGACAAGTGGAATCTAGAATTCAATGAAGGAGCCACTCACGATACAATGGCTAAAGAAGATTCTGAATCAGCGATTGATCTCTCCTCTGGTCTCATCAAACATTGTGAGGTGTTGTTAGAAAGATTGAAGTCACTACAAGGGTCGAAGGACCCGCTGCCAGGTCTCACCTGGATCTCAAAGTACACTATGGAAGTTGAGATAAGGCTATTTGATATTAAGTCTCTTTTATCTCATGGTCCATCTCTGCTTCCATTTTGGATGCACTCTGAAAGACAACTTAAACAACTAGAGAGTGCTATTAACGACGAAACGTCCAAGATTGTTAAATCTCTACGGTCAAATCAAGTTGAGACAACATATCCATCTTTCTGCCAGGGAGAAAACAATTTTCAGGAAAGCATGGGGCATAAAACTGAAGTAGATCGAGTTGGAACTTTGGATGATCGTCATTTTACTCATATTGTTGATACATCAGCGATGGTTTCTAAAGATCAAGATGTTAAAAGTTCTGGTGCAAATTCTGAGCATGTGTCTGCATCTGTCTCTCCTACTAGACATATGAATAGTGGCGAAAGTGAACAAGTCAATGGGGTGGTATTTCCCGATGACTCGACTACCAAAAATGAGATTTGTGCTGGGGAAGAGGTTGATATGGATGTGGACATGGAAGTTGAAGAGTCAAACTCTGCAGGAGATACAACTATTGAATATGCATTGAATTTCAAGGAGTTTGCTCCACCAGAGCAGCCAATTCATCCTAGTCCACCTTCTATATACACATCTTCAGTGTCAGAGGATATGTTCACTGTTCCACCTCCCCCAGATGAGGAATGGATTCCCCCACCACCACCAGATAATGAACAAATTCCTCCGCCCCCACCTGATGAGCCGCCACCTGAGCCCCCATATCCTCCTCATCCATCTTACCATGAAACAGCTCAACCTCCTTATGTAGAGCAATACAATTATTCCTATCCAGCTTCCAGTTTTGGGTATTATGGACATACCATCACTGAAGCTTCTAACACTAATTTTTTTGGACATCCTGAAGGATCGCAAGTAGTTATCCCCCCGGCACCACTTTACTATGGTGCAGTTCCTAGCACCTACACGGAAACTGCTCAAGTTGCAGTTAACCCTGTTGAGTCTGTCACATATTATGGGCTTCAAGATAGCACTGTACCTGCTGCTCCTGTAGTTAGTAGTGTAGAGCCGTTGCAGTTTCACAGCGAGTCTGCTCCTCTAAACTATGGAAACCTGCCATCTGATCAGACTGGATCCATCAACTCCCATTCAGGAGCAGGCAGTAGCGCTTCAAATGTGAATATTGAGCATTTTTCTGTTGATAGTGGCAATGGTGGGGGATGTATTGAGGTTTCTTCTACCACAGCCACAATTCAAGCACCTGCAACTGTTTCTGTGCCATCAACTAATTCTGTCCCTACCGCTGCATCTATTTCTGCCACATCAGTGGCTGCCAAGGTTCAATCTAAAGTTCCAAGGACGAAAAAGCGGACAATTGCAGCTGCTTGCTCCTTGAGGTCTAATAAGAAAGTGTCCAGTTTAGTAGACAAGTGGAAAGCAGCAAAAGAGGAGTTGCTTGAAGACGAGGAGGAACCTGAAAATGCATACGAGTTGTTAGAGAGGAAGCGACAAAGGGGAATAGAGGAATGGTATGCACAACAAATTACCAGCGGAGAGGCCAAAGATAATGCTAATTTTCAGCCTCTGGGTGGCGACTGGCGTGAGAAAGTGAAGCGAAGAAAAGCTCAATTAGCCCGTGAAGCTGCAAAAACTGCAGCAGCATCTGCATCTGAGGCTCCTACTGATGGGAACAAGCAGCCTGATATGACCGAACAATCAAACGGTCTCCCACCTGGATGGCAGGCCTACTGGGACGAATCCTCAAAGCAGGTTTACTATGGAAATACCGTGACCTCGGAAACTACATGGACGAAACCAACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

899

Amino Acids

98.17

Weight (kDa)

4.58

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WW	PF00397	147 - 175	4.2e-08	WW domain
WW	PF00397	866 - 896	5.1e-10	WW domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13225 AT3G13225 AT3G13225
fragaria_vesca	FvH4_3g42241 FvH4_3g42241 FvH4_3g42241 FvH4_3g42241 FvH4_3g42241 FvH4_3g42241 FvH4_3g42241
malus_domestica	MD03G1035400.v1.1 MD11G1037100.v1.1
prunus_persica	Prupe.6G028400_v2.0.a1 Prupe.6G028400_v2.0.a1
pyrus_communis	pycom03g02760 pycom11g03080
rosa_chinensis	RchiOBHm_Chr5g0075571
rosa_laevigata	RLG00000036576
rosa_multiflora	Rmu_sc0003437.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006000
rosa_rugosa	Rorug05G0440600 Rorug05G0440700
rosa_samantha	Rh5AG497800 Rh5BG518600 Rh5CG542300 Rh5DG530500
rosa_wichuraiana	Rw5G046140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2140
Acc36I	ACCTGC	4 cut(s)	1918, 1992, 2140, 2629
AccB1I	GGYRCC	2 cut(s)	674, 1801
AccB7I	CCANNNNNTGG	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	2295
AciI	CCGC	7 cut(s)	86, 878, 1598, 1616, 2172, 2239, 2421
AclWI	GGATC	4 cut(s)	905, 1786, 1998, 2011
AcsI	RAATTY	6 cut(s)	160, 283, 743, 1243, 1444, 1590
AcuI	CTGAAG	5 cut(s)	50, 1161, 1494, 1761, 1794
AfaI	GTAC	5 cut(s)	367, 417, 607, 908, 1908
AfeI	AGCGCT	2 cut(s)	622, 2038
AfiI	CCNNNNNNNGG	6 cut(s)	565, 884, 1552, 1716, 2459, 2555
AhdI	GACNNNNNGTC	1 cut(s)	1036
AjnI	CCWGG	6 cut(s)	537, 558, 883, 893, 1098, 2602
AleI	CACNNNNGTG	1 cut(s)	2195
AloI	GAACNNNNNNTCC	2 cut(s)	533, 565
AluBI	AGCT	7 cut(s)	477, 1664, 1706, 1745, 2252, 2495, 2513
AluI	AGCT	7 cut(s)	477, 1664, 1706, 1745, 2252, 2495, 2513
Alw26I	GTCTC	8 cut(s)	8, 355, 821, 893, 951, 1070, 1273, 2600
AlwI	GGATC	4 cut(s)	905, 1786, 1998, 2011
AlwNI	CAGNNNCTG	4 cut(s)	374, 2201, 2455, 2534
Aor51HI	AGCGCT	2 cut(s)	622, 2038
AoxI	GGCC	3 cut(s)	33, 2427, 2613
ApoI	RAATTY	6 cut(s)	160, 283, 743, 1243, 1444, 1590
Asp700I	GAANNNNTTC	2 cut(s)	1560, 1590
AspLEI	GCGC	2 cut(s)	623, 2039
AspS9I	GGNCC	3 cut(s)	717, 874, 962
AsuC2I	CCSGG	2 cut(s)	292, 1799
AsuHPI	GGTGA	4 cut(s)	47, 215, 566, 883
AvaII	GGWCC	3 cut(s)	717, 874, 962
BamHI	GGATCC	1 cut(s)	2003
BanI	GGYRCC	2 cut(s)	674, 1801
BanII	GRGCYC	1 cut(s)	1629
BbsI	GAAGAC	2 cut(s)	246, 2337
BceAI	ACGGC	1 cut(s)	1924
BciT130I	CCWGG	6 cut(s)	539, 560, 885, 895, 1100, 2604
BclI	TGATCA	2 cut(s)	325, 1993
BcnI	CCSGG	2 cut(s)	292, 1799
BcoDI	GTCTC	8 cut(s)	8, 355, 821, 893, 951, 1070, 1273, 2600
BfaI	CTAG	9 cut(s)	234, 354, 411, 618, 740, 1013, 1278, 1485, 1827
BfmI	CTRYAG	4 cut(s)	153, 1413, 1920, 2523
BfoI	RGCGCY	2 cut(s)	624, 2040
BfuAI	ACCTGC	4 cut(s)	1918, 1992, 2140, 2629
Bme1390I	CCNGG	8 cut(s)	292, 539, 560, 885, 895, 1100, 1799, 2604
Bme18I	GGWCC	3 cut(s)	717, 874, 962
BmeRI	GACNNNNNGTC	1 cut(s)	1036
BmgT120I	GGNCC	3 cut(s)	717, 874, 962
BmiI	GGNNCC	9 cut(s)	676, 718, 719, 757, 876, 1803, 2005, 2343, 2547
BmrFI	CCNGG	8 cut(s)	292, 539, 560, 885, 895, 1100, 1799, 2604
BmrI	ACTGGG	1 cut(s)	2629
BmsI	GCATC	5 cut(s)	975, 1271, 2186, 2540, 2546
BmuI	ACTGGG	1 cut(s)	2629
BpiI	GAAGAC	2 cut(s)	246, 2337
BplI	GAGNNNNNCTC	2 cut(s)	1394, 1426
Bpu10I	CCTNAGC	1 cut(s)	1623
BpuEI	CTTGAG	2 cut(s)	1833, 2284
BpuMI	CCSGG	2 cut(s)	292, 1799
BsaAI	YACGTR	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	135
BsaI	GGTCTC	3 cut(s)	821, 893, 2600
BsaJI	CCNNGG	6 cut(s)	537, 1099, 1797, 2205, 2225, 2664
Bsc4I	CCNNNNNNNGG	6 cut(s)	565, 884, 1552, 1716, 2459, 2555
Bse1I	ACTGG	7 cut(s)	491, 505, 1710, 2005, 2286, 2471, 2624
Bse3DI	GCAATG	2 cut(s)	151, 2086
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	6 cut(s)	539, 560, 885, 895, 1100, 2604
BseDI	CCNNGG	6 cut(s)	537, 1099, 1797, 2205, 2225, 2664
BseGI	GGATG	9 cut(s)	130, 990, 1171, 1387, 1480, 1642, 1768, 2096, 2612
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	6 cut(s)	565, 884, 1552, 1716, 2459, 2555
BseMI	GCAATG	2 cut(s)	151, 2086
BseMII	CTCAG	4 cut(s)	266, 1239, 1614, 2532
BseNI	ACTGG	7 cut(s)	491, 505, 1710, 2005, 2286, 2471, 2624
BseRI	GAGGAG	5 cut(s)	799, 1629, 1956, 2333, 2351
BseYI	CCCAGC	2 cut(s)	40, 1361
BsgI	GTGCAG	1 cut(s)	1839
BshFI	GGCC	3 cut(s)	35, 2429, 2615
BshNI	GGYRCC	2 cut(s)	674, 1801
BsiSI	CCGG	2 cut(s)	292, 1799
BslFI	GGGAC	4 cut(s)	506, 703, 2150, 2636
BslI	CCNNNNNNNGG	6 cut(s)	565, 884, 1552, 1716, 2459, 2555
BsmAI	GTCTC	8 cut(s)	8, 355, 821, 893, 951, 1070, 1273, 2600
BsmBI	CGTCTC	2 cut(s)	8, 355
BsmFI	GGGAC	4 cut(s)	506, 703, 2150, 2636
BsnI	GGCC	3 cut(s)	35, 2429, 2615
Bso31I	GGTCTC	3 cut(s)	821, 893, 2600
Bsp1286I	GDGCHC	1 cut(s)	1629
Bsp1407I	TGTACA	1 cut(s)	415
Bsp143I	GATC	9 cut(s)	325, 802, 897, 1147, 1168, 1216, 1778, 1993, 2003
BspACI	CCGC	7 cut(s)	86, 878, 1598, 1616, 2172, 2239, 2421
BspANI	GGCC	3 cut(s)	35, 2429, 2615
BspCNI	CTCAG	4 cut(s)	265, 1240, 1615, 2533
BspLI	GGNNCC	9 cut(s)	676, 718, 719, 757, 876, 1803, 2005, 2343, 2547
BspMAI	CTGCAG	2 cut(s)	1417, 2527
BspMI	ACCTGC	4 cut(s)	1918, 1992, 2140, 2629
BspPI	GGATC	4 cut(s)	905, 1786, 1998, 2011
BspT107I	GGYRCC	2 cut(s)	674, 1801
BspTNI	GGTCTC	3 cut(s)	821, 893, 2600
BsrDI	GCAATG	2 cut(s)	151, 2086
BsrGI	TGTACA	1 cut(s)	415
BsrI	ACTGG	7 cut(s)	491, 505, 1710, 2005, 2286, 2471, 2624
BssECI	CCNNGG	6 cut(s)	537, 1099, 1797, 2205, 2225, 2664
BssMI	GATC	9 cut(s)	325, 802, 897, 1147, 1168, 1216, 1778, 1993, 2003
BssT1I	CCWWGG	2 cut(s)	2205, 2225
Bst2UI	CCWGG	6 cut(s)	539, 560, 885, 895, 1100, 2604
Bst4CI	ACNGT	7 cut(s)	664, 1062, 1534, 1906, 2140, 2594, 2659
Bst6I	CTCTTC	3 cut(s)	459, 1362, 1395
BstAPI	GCANNNNNTGC	2 cut(s)	2522, 2534
BstAUI	TGTACA	1 cut(s)	415
BstBAI	YACGTR	1 cut(s)	365
BstC8I	GCNNGC	3 cut(s)	2029, 2257, 2613
BstDEI	CTNAG	4 cut(s)	252, 1248, 1623, 2541
BstEII	GGTNACC	2 cut(s)	44, 554
BstF5I	GGATG	9 cut(s)	130, 990, 1171, 1387, 1480, 1642, 1768, 2096, 2612
BstH2I	RGCGCY	2 cut(s)	624, 2040
BstHHI	GCGC	2 cut(s)	623, 2039
BstKTI	GATC	9 cut(s)	328, 805, 900, 1150, 1171, 1219, 1781, 1996, 2006
BstMAI	GTCTC	8 cut(s)	8, 355, 821, 893, 951, 1070, 1273, 2600
BstMBI	GATC	9 cut(s)	325, 802, 897, 1147, 1168, 1216, 1778, 1993, 2003
BstMWI	GCNNNNNNNGC	8 cut(s)	575, 1624, 1853, 2501, 2510, 2522, 2534, 2543
BstNI	CCWGG	6 cut(s)	539, 560, 885, 895, 1100, 2604
BstNSI	RCATGY	1 cut(s)	1256
BstPI	GGTNACC	2 cut(s)	44, 554
BstSCI	CCNGG	8 cut(s)	290, 537, 558, 883, 893, 1098, 1797, 2602
BstSFI	CTRYAG	4 cut(s)	153, 1413, 1920, 2523
BstSNI	TACGTA	1 cut(s)	365
BstV2I	GAAGAC	2 cut(s)	246, 2337
BstX2I	RGATCY	2 cut(s)	897, 2003
BstXI	CCANNNNNNTGG	2 cut(s)	2197, 2607
BstYI	RGATCY	2 cut(s)	897, 2003
BsuRI	GGCC	3 cut(s)	35, 2429, 2615
BtgZI	GCGATG	1 cut(s)	1217
BtsCI	GGATG	9 cut(s)	130, 990, 1171, 1387, 1480, 1642, 1768, 2096, 2612
BtsIMutI	CAGTG	5 cut(s)	1518, 1530, 1737, 1902, 2202
BveI	ACCTGC	4 cut(s)	1918, 1992, 2140, 2629
Cac8I	GCNNGC	3 cut(s)	2029, 2257, 2613
CaiI	CAGNNNCTG	4 cut(s)	374, 2201, 2455, 2534
CfoI	GCGC	2 cut(s)	623, 2039
Cfr13I	GGNCC	3 cut(s)	717, 874, 962
Csp6I	GTAC	5 cut(s)	366, 416, 606, 907, 1907
CviQI	GTAC	5 cut(s)	366, 416, 606, 907, 1907
DdeI	CTNAG	4 cut(s)	252, 1248, 1623, 2541
DpnI	GATC	9 cut(s)	327, 804, 899, 1149, 1170, 1218, 1780, 1995, 2005
DpnII	GATC	9 cut(s)	325, 802, 897, 1147, 1168, 1216, 1778, 1993, 2003
DriI	GACNNNNNGTC	1 cut(s)	1036
Eam1104I	CTCTTC	3 cut(s)	459, 1362, 1395
Eam1105I	GACNNNNNGTC	1 cut(s)	1036
EarI	CTCTTC	3 cut(s)	459, 1362, 1395
EciI	GGCGGA	1 cut(s)	1587
Eco105I	TACGTA	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	2205, 2225
Eco147I	AGGCCT	1 cut(s)	2615
Eco24I	GRGCYC	1 cut(s)	1629
Eco31I	GGTCTC	3 cut(s)	821, 893, 2600
Eco32I	GATATC	1 cut(s)	346
Eco47I	GGWCC	3 cut(s)	717, 874, 962
Eco47III	AGCGCT	2 cut(s)	622, 2038
Eco57I	CTGAAG	5 cut(s)	50, 1161, 1494, 1761, 1794
Eco91I	GGTNACC	2 cut(s)	44, 554
EcoO109I	RGGNCCY	2 cut(s)	717, 874
EcoO65I	GGTNACC	2 cut(s)	44, 554
EcoRI	GAATTC	1 cut(s)	743
EcoRII	CCWGG	6 cut(s)	537, 558, 883, 893, 1098, 2602
EcoRV	GATATC	1 cut(s)	346
EcoT14I	CCWWGG	2 cut(s)	2205, 2225
EcoT22I	ATGCAT	3 cut(s)	462, 1441, 2356
EcoT38I	GRGCYC	1 cut(s)	1629
ErhI	CCWWGG	2 cut(s)	2205, 2225
Esp3I	CGTCTC	2 cut(s)	8, 355
FaqI	GGGAC	4 cut(s)	506, 703, 2150, 2636
FauI	CCCGC	1 cut(s)	885
FauNDI	CATATG	1 cut(s)	1284
FbaI	TGATCA	2 cut(s)	325, 1993
FblI	GTMKAC	1 cut(s)	2295
FokI	GGATG	9 cut(s)	137, 997, 1178, 1394, 1467, 1629, 1755, 2103, 2619
FriOI	GRGCYC	1 cut(s)	1629
FspBI	CTAG	9 cut(s)	234, 354, 411, 618, 740, 1013, 1278, 1485, 1827
GlaI	GCGC	2 cut(s)	622, 2038
GsaI	CCCAGC	2 cut(s)	44, 1365
HaeII	RGCGCY	2 cut(s)	624, 2040
HaeIII	GGCC	3 cut(s)	35, 2429, 2615
HapII	CCGG	2 cut(s)	292, 1799
HhaI	GCGC	2 cut(s)	623, 2039
Hin6I	GCGC	2 cut(s)	621, 2037
HinP1I	GCGC	2 cut(s)	621, 2037
HincII	GTYRAC	1 cut(s)	1861
HindII	GTYRAC	1 cut(s)	1861
HindIII	AAGCTT	1 cut(s)	1743
HpaI	GTTAAC	1 cut(s)	1861
HpaII	CCGG	2 cut(s)	292, 1799
HphI	GGTGA	4 cut(s)	47, 215, 566, 883
Hpy188III	TCNNGA	9 cut(s)	401, 740, 764, 1118, 1220, 1328, 1772, 1895, 2022
Hpy99I	CGWCG	1 cut(s)	1034
HpyAV	CCTTC	7 cut(s)	250, 605, 662, 746, 865, 1503, 1769
HpyCH4III	ACNGT	7 cut(s)	664, 1062, 1534, 1906, 2140, 2594, 2659
HpyCH4IV	ACGT	2 cut(s)	364, 1037
HpyF10VI	GCNNNNNNNGC	8 cut(s)	575, 1624, 1853, 2501, 2510, 2522, 2534, 2543
HpyF3I	CTNAG	4 cut(s)	252, 1248, 1623, 2541
HpySE526I	ACGT	2 cut(s)	364, 1037
HspAI	GCGC	2 cut(s)	621, 2037
KflI	GGGWCCC	1 cut(s)	717
Ksp22I	TGATCA	2 cut(s)	325, 1993
KspAI	GTTAAC	1 cut(s)	1861
Kzo9I	GATC	9 cut(s)	325, 802, 897, 1147, 1168, 1216, 1778, 1993, 2003
LmnI	GCTCC	7 cut(s)	755, 1465, 1921, 1969, 2024, 2264, 2551
LweI	GCATC	5 cut(s)	975, 1271, 2186, 2540, 2546
MaeI	CTAG	9 cut(s)	234, 354, 411, 618, 740, 1013, 1278, 1485, 1827
MaeII	ACGT	2 cut(s)	364, 1037
MaeIII	GTNAC	7 cut(s)	44, 302, 554, 658, 855, 1876, 2659
MalI	GATC	9 cut(s)	327, 804, 899, 1149, 1170, 1218, 1780, 1995, 2005
MboI	GATC	9 cut(s)	325, 802, 897, 1147, 1168, 1216, 1778, 1993, 2003
MfeI	CAATTG	1 cut(s)	2244
MflI	RGATCY	2 cut(s)	897, 2003
MhlI	GDGCHC	1 cut(s)	1629
MlyI	GAGTC	4 cut(s)	1328, 1412, 1880, 1967
MmeI	TCCRAC	3 cut(s)	102, 425, 1135
Mph1103I	ATGCAT	3 cut(s)	462, 1441, 2356
MroXI	GAANNNNTTC	2 cut(s)	1560, 1590
MseI	TTAA	7 cut(s)	189, 942, 1005, 1026, 1050, 1227, 1860
MslI	CAYNNNNRTG	4 cut(s)	144, 711, 2195, 2605
MspA1I	CMGCKG	5 cut(s)	88, 880, 2174, 2252, 2421
MspI	CCGG	2 cut(s)	292, 1799
MspR9I	CCNGG	8 cut(s)	292, 539, 560, 885, 895, 1100, 1799, 2604
MunI	CAATTG	1 cut(s)	2244
MvaI	CCWGG	6 cut(s)	539, 560, 885, 895, 1100, 2604
MwoI	GCNNNNNNNGC	8 cut(s)	575, 1624, 1853, 2501, 2510, 2522, 2534, 2543
NciI	CCSGG	2 cut(s)	292, 1799
NdeI	CATATG	1 cut(s)	1284
NdeII	GATC	9 cut(s)	325, 802, 897, 1147, 1168, 1216, 1778, 1993, 2003
NlaIV	GGNNCC	9 cut(s)	676, 718, 719, 757, 876, 1803, 2005, 2343, 2547
NmuCI	GTSAC	6 cut(s)	302, 554, 658, 855, 1876, 2659
NsiI	ATGCAT	3 cut(s)	462, 1441, 2356
NspI	RCATGY	1 cut(s)	1256
OliI	CACNNNNGTG	1 cut(s)	2195
PaqCI	CACCTGC	1 cut(s)	2140
PceI	AGGCCT	1 cut(s)	2615
PdmI	GAANNNNTTC	2 cut(s)	1560, 1590
PfeI	GAWTC	9 cut(s)	131, 206, 371, 701, 736, 785, 791, 1561, 2627
PflMI	CCANNNNNTGG	1 cut(s)	565
PleI	GAGTC	4 cut(s)	1328, 1411, 1879, 1966
PpsI	GAGTC	4 cut(s)	1328, 1411, 1879, 1966
Ppu21I	YACGTR	1 cut(s)	365
PpuMI	RGGWCCY	2 cut(s)	717, 874
Psp5II	RGGWCCY	2 cut(s)	717, 874
Psp6I	CCWGG	6 cut(s)	537, 558, 883, 893, 1098, 2602
PspEI	GGTNACC	2 cut(s)	44, 554
PspFI	CCCAGC	2 cut(s)	40, 1361
PspGI	CCWGG	6 cut(s)	537, 558, 883, 893, 1098, 2602
PspN4I	GGNNCC	9 cut(s)	676, 718, 719, 757, 876, 1803, 2005, 2343, 2547
PspPI	GGNCC	3 cut(s)	717, 874, 962
PspPPI	RGGWCCY	2 cut(s)	717, 874
PstI	CTGCAG	2 cut(s)	1417, 2527
PstNI	CAGNNNCTG	4 cut(s)	374, 2201, 2455, 2534
PsuI	RGATCY	2 cut(s)	897, 2003
PvuII	CAGCTG	1 cut(s)	2252
RsaI	GTAC	5 cut(s)	367, 417, 607, 908, 1908
RsaNI	GTAC	5 cut(s)	366, 416, 606, 907, 1907
RseI	CAYNNNNRTG	4 cut(s)	144, 711, 2195, 2605
SaqAI	TTAA	7 cut(s)	189, 942, 1005, 1026, 1050, 1227, 1860
Sau3AI	GATC	9 cut(s)	325, 802, 897, 1147, 1168, 1216, 1778, 1993, 2003
Sau96I	GGNCC	3 cut(s)	717, 874, 962
SchI	GAGTC	4 cut(s)	1328, 1412, 1880, 1967
ScrFI	CCNGG	8 cut(s)	292, 539, 560, 885, 895, 1100, 1799, 2604
SduI	GDGCHC	1 cut(s)	1629
SfaNI	GCATC	5 cut(s)	975, 1271, 2186, 2540, 2546
SfcI	CTRYAG	4 cut(s)	153, 1413, 1920, 2523
SinI	GGWCC	3 cut(s)	717, 874, 962
SmiMI	CAYNNNNRTG	4 cut(s)	144, 711, 2195, 2605
SmlI	CTYRAG	2 cut(s)	1848, 2263
SmoI	CTYRAG	2 cut(s)	1848, 2263
SnaBI	TACGTA	1 cut(s)	365
SseBI	AGGCCT	1 cut(s)	2615
SsiI	CCGC	7 cut(s)	86, 878, 1598, 1616, 2172, 2239, 2421
SspI	AATATT	1 cut(s)	2053
SspMI	CTAG	9 cut(s)	234, 354, 411, 618, 740, 1013, 1278, 1485, 1827
StuI	AGGCCT	1 cut(s)	2615
StyD4I	CCNGG	8 cut(s)	290, 537, 558, 883, 893, 1098, 1797, 2602
StyI	CCWWGG	2 cut(s)	2205, 2225
TaaI	ACNGT	7 cut(s)	664, 1062, 1534, 1906, 2140, 2594, 2659
TaiI	ACGT	2 cut(s)	367, 1040
TaqI	TCGA	3 cut(s)	869, 1150, 1337
TaqII	GACCGA	1 cut(s)	2594
TatI	WGTACW	2 cut(s)	415, 906
TauI	GCSGC	1 cut(s)	1618
TfiI	GAWTC	9 cut(s)	131, 206, 371, 701, 736, 785, 791, 1561, 2627
Tru1I	TTAA	7 cut(s)	189, 942, 1005, 1026, 1050, 1227, 1860
Tru9I	TTAA	7 cut(s)	189, 942, 1005, 1026, 1050, 1227, 1860
TscAI	CASTG	5 cut(s)	1518, 1537, 1744, 1909, 2202
TseFI	GTSAC	6 cut(s)	302, 554, 658, 855, 1876, 2659
Tsp45I	GTSAC	6 cut(s)	302, 554, 658, 855, 1876, 2659
TspDTI	ATGAA	8 cut(s)	20, 477, 501, 765, 1301, 1469, 1599, 1671
TspGWI	ACGGA	1 cut(s)	1853
TspRI	CASTG	5 cut(s)	1518, 1537, 1744, 1909, 2202
Van91I	CCANNNNNTGG	1 cut(s)	565
VpaK11BI	GGWCC	3 cut(s)	717, 874, 962
XapI	RAATTY	6 cut(s)	160, 283, 743, 1243, 1444, 1590
XbaI	TCTAGA	1 cut(s)	739
XceI	RCATGY	1 cut(s)	1256
XcmI	CCANNNNNNNNNTGG	2 cut(s)	891, 1554
XmiI	GTMKAC	1 cut(s)	2295
XmnI	GAANNNNTTC	2 cut(s)	1560, 1590
XspI	CTAG	9 cut(s)	234, 354, 411, 618, 740, 1013, 1278, 1485, 1827
Zsp2I	ATGCAT	3 cut(s)	462, 1441, 2356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.