Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006119

Physical Location & Seq

Genomic Coordinates Forward (+)

61321191 .. 61323018

Gene Structure 1828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0440700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCTCCTGCAGCTAATTTTTCTGCTTCTTTTTCTTCTTCTTCATCCTCAAGATGGTGCCCAACCCCAGAGCAACTGATGATCCTTGAAGAGATGTACAGGGCTGGAGTCAGAACTCCAAATGCTTCCCAAATCCAACAGATCACTGCCCAGCTCTCTTTCTATGGAAAGATTGAGGGCAAGAATGTGTTCTACTGGTTCCAAAACCACAAGGCAAGGGACAGACAAAAGCTTAGGAGGAAGCTTTGCAAGCAACTTCAACTTCAACAGCAACAAATCTATCATAATTATTACCATTGTCAACATCATCATCAACAGCAGCTAATGCTCAACCAGCAGAGCCTTCTAGGTTACCTTGATCAGTCCCCTCCTGCTTCTTCTGTTCTTCATCAGCCGCTTTGTTGTCATCATCATAACTTATCAGCTGGCTTTCTTCCTCAGGTGGGAGTTGAAGATGCATTGATGAACTACACGCGCAAGGTCCATGAAATCCCAGCAGCAGCAGCATCAGAGAGATTGGAGATGGAGAAGTCGGTGCTGAACATGTATGGCCATGATTGGATGATGACGACGAAGAAGACGATGGATGTGGGCCCACCCTCATCACCTGCATGTTGTACCAGATCAGCTGCTGCTGCTACTCCTAGACCCCTTAAAACACTCCAACTCTTCCCCATCAAGTCCCCTAATCTCAGAGCTGAAGATCATGAAGAAGAAGAATCTACATCTACACCATCCAACCCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

249

Amino Acids

28.28

Weight (kDa)

8.65

Isoelectric Point (pI)

78.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	17 - 76	1.9e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13225 AT3G13225 AT3G13225
fragaria_vesca	FvH4_3g42241 FvH4_3g42241 FvH4_3g42241 FvH4_3g42241 FvH4_3g42241 FvH4_3g42241 FvH4_3g42241
malus_domestica	MD03G1035400.v1.1 MD11G1037100.v1.1
prunus_persica	Prupe.6G028400_v2.0.a1 Prupe.6G028400_v2.0.a1
pyrus_communis	pycom03g02760 pycom11g03080
rosa_chinensis	RchiOBHm_Chr5g0075571
rosa_laevigata	RLG00000036576
rosa_multiflora	Rmu_sc0003437.1_g000006
rosa_roxburghii	Rroxscaffold_1G00006000
rosa_rugosa	Rorug05G0440600 Rorug05G0440700
rosa_samantha	Rh5AG497800 Rh5BG518600 Rh5CG542300 Rh5DG530500
rosa_wichuraiana	Rw5G046140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	616
Acc36I	ACCTGC	1 cut(s)	616
AccB1I	GGYRCC	1 cut(s)	57
AccII	CGCG	1 cut(s)	475
AciI	CCGC	1 cut(s)	395
AclWI	GGATC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	550
AcuI	CTGAAG	1 cut(s)	720
AfaI	GTAC	2 cut(s)	98, 619
AfiI	CCNNNNNNNGG	2 cut(s)	54, 443
AflIII	ACRYGT	1 cut(s)	543
AgsI	TTSAA	4 cut(s)	89, 260, 266, 452
AluBI	AGCT	8 cut(s)	14, 154, 232, 244, 322, 425, 629, 698
AluI	AGCT	8 cut(s)	14, 154, 232, 244, 322, 425, 629, 698
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	76
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	3 cut(s)	550, 592, 744
ApaI	GGGCCC	1 cut(s)	596
ApeKI	GCWGC	8 cut(s)	11, 319, 497, 500, 503, 629, 632, 635
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	477
AspS9I	GGNCC	3 cut(s)	481, 592, 593
AsuC2I	CCSGG	1 cut(s)	743
AsuHPI	GGTGA	1 cut(s)	597
AvaII	GGWCC	1 cut(s)	481
AxyI	CCTNAGG	1 cut(s)	438
BaeGI	GKGCMC	2 cut(s)	62, 596
BalI	TGGCCA	1 cut(s)	552
BanI	GGYRCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	596
BbsI	GAAGAC	1 cut(s)	584
BbvI	GCAGC	8 cut(s)	23, 331, 509, 512, 515, 616, 619, 622
BccI	CCATC	5 cut(s)	48, 517, 577, 683, 742
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	743
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	347, 645, 748
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	616
BisI	GCNGC	9 cut(s)	12, 320, 395, 498, 501, 504, 630, 633, 636
BlsI	GCNGC	9 cut(s)	13, 321, 396, 499, 502, 505, 631, 634, 637
Bme1390I	CCNGG	1 cut(s)	743
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	3 cut(s)	481, 592, 593
BmiI	GGNNCC	3 cut(s)	59, 200, 594
BmrFI	CCNGG	1 cut(s)	743
BmsI	GCATC	2 cut(s)	445, 515
BpiI	GAAGAC	1 cut(s)	584
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	743
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 443
Bse1I	ACTGG	1 cut(s)	200
Bse21I	CCTNAGG	1 cut(s)	438
BseGI	GGATG	4 cut(s)	44, 567, 592, 734
BseLI	CCNNNNNNNGG	2 cut(s)	54, 443
BseMII	CTCAG	2 cut(s)	452, 706
BseNI	ACTGG	1 cut(s)	200
BseSI	GKGCMC	2 cut(s)	62, 596
BseXI	GCAGC	8 cut(s)	23, 331, 509, 512, 515, 616, 619, 622
BseYI	CCCAGC	2 cut(s)	150, 493
Bsh1236I	CGCG	1 cut(s)	475
BshFI	GGCC	3 cut(s)	552, 594, 746
BshNI	GGYRCC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	743
BslFI	GGGAC	3 cut(s)	233, 349, 667
BslI	CCNNNNNNNGG	2 cut(s)	54, 443
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	233, 349, 667
BsnI	GGCC	3 cut(s)	552, 594, 746
Bsp120I	GGGCCC	1 cut(s)	592
Bsp1286I	GDGCHC	2 cut(s)	62, 596
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	5 cut(s)	81, 141, 358, 623, 703
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	3 cut(s)	552, 594, 746
BspCNI	CTCAG	2 cut(s)	451, 705
BspFNI	CGCG	1 cut(s)	475
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	3 cut(s)	59, 200, 594
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	57
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	5 cut(s)	81, 141, 358, 623, 703
Bst6I	CTCTTC	2 cut(s)	84, 674
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	251, 427
BstDEI	CTNAG	3 cut(s)	233, 438, 692
BstEII	GGTNACC	1 cut(s)	350
BstF5I	GGATG	4 cut(s)	44, 567, 592, 734
BstFNI	CGCG	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	5 cut(s)	84, 144, 361, 626, 706
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	5 cut(s)	81, 141, 358, 623, 703
BstMWI	GCNNNNNNNGC	5 cut(s)	250, 325, 334, 503, 635
BstNSI	RCATGY	2 cut(s)	547, 615
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	741
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	2 cut(s)	62, 596
BstUI	CGCG	1 cut(s)	475
BstV1I	GCAGC	8 cut(s)	23, 331, 509, 512, 515, 616, 619, 622
BstV2I	GAAGAC	1 cut(s)	584
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	552, 594, 746
BtsCI	GGATG	4 cut(s)	44, 567, 592, 734
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	2 cut(s)	251, 427
CaiI	CAGNNNCTG	1 cut(s)	632
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	1 cut(s)	477
Cfr13I	GGNCC	3 cut(s)	481, 592, 593
Csp6I	GTAC	2 cut(s)	97, 618
CviAII	CATG	5 cut(s)	485, 544, 554, 612, 707
CviQI	GTAC	2 cut(s)	97, 618
DdeI	CTNAG	3 cut(s)	233, 438, 692
DpnI	GATC	5 cut(s)	83, 143, 360, 625, 705
DpnII	GATC	5 cut(s)	81, 141, 358, 623, 703
EaeI	YGGCCR	1 cut(s)	550
Eam1104I	CTCTTC	2 cut(s)	84, 674
EarI	CTCTTC	2 cut(s)	84, 674
Eco24I	GRGCYC	1 cut(s)	596
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	720
Eco81I	CCTNAGG	1 cut(s)	438
Eco91I	GGTNACC	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	596
FaeI	CATG	5 cut(s)	488, 547, 557, 615, 710
FaiI	YATR	9 cut(s)	165, 285, 414, 486, 545, 549, 555, 613, 708
FaqI	GGGAC	3 cut(s)	233, 349, 667
FatI	CATG	5 cut(s)	484, 543, 553, 611, 706
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	9 cut(s)	12, 320, 395, 498, 501, 504, 630, 633, 636
FokI	GGATG	4 cut(s)	31, 574, 599, 721
FriOI	GRGCYC	1 cut(s)	596
Fsp4HI	GCNGC	9 cut(s)	12, 320, 395, 498, 501, 504, 630, 633, 636
FspBI	CTAG	3 cut(s)	347, 645, 748
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	9 cut(s)	12, 320, 395, 498, 501, 504, 630, 633, 636
GsaI	CCCAGC	2 cut(s)	154, 497
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	552, 594, 746
HapII	CCGG	1 cut(s)	743
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	5 cut(s)	488, 547, 557, 615, 710
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HindIII	AAGCTT	2 cut(s)	230, 242
HinfI	GANTC	2 cut(s)	108, 719
HpaII	CCGG	1 cut(s)	743
HphI	GGTGA	1 cut(s)	597
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	3 cut(s)	113, 511, 695
Hpy188III	TCNNGA	2 cut(s)	51, 707
Hpy8I	GTNNAC	1 cut(s)	302
Hpy99I	CGWCG	1 cut(s)	574
HpyAV	CCTTC	1 cut(s)	353
HpyCH4V	TGCA	4 cut(s)	11, 249, 458, 611
HpyF10VI	GCNNNNNNNGC	5 cut(s)	250, 325, 334, 503, 635
HpyF3I	CTNAG	3 cut(s)	233, 438, 692
Hsp92II	CATG	5 cut(s)	488, 547, 557, 615, 710
HspAI	GCGC	1 cut(s)	475
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	5 cut(s)	81, 141, 358, 623, 703
Lsp1109I	GCAGC	8 cut(s)	23, 331, 509, 512, 515, 616, 619, 622
LweI	GCATC	2 cut(s)	445, 515
MaeI	CTAG	3 cut(s)	347, 645, 748
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	5 cut(s)	83, 143, 360, 625, 705
MboI	GATC	5 cut(s)	81, 141, 358, 623, 703
MhlI	GDGCHC	2 cut(s)	62, 596
MlsI	TGGCCA	1 cut(s)	552
MluCI	AATT	2 cut(s)	16, 286
MluNI	TGGCCA	1 cut(s)	552
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	2 cut(s)	160, 688
MnlI	CCTC	6 cut(s)	58, 169, 231, 378, 447, 610
Mox20I	TGGCCA	1 cut(s)	552
Mph1103I	ATGCAT	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	552
MseI	TTAA	1 cut(s)	654
MslI	CAYNNNNRTG	1 cut(s)	610
Msp20I	TGGCCA	1 cut(s)	552
MspA1I	CMGCKG	2 cut(s)	425, 629
MspI	CCGG	1 cut(s)	743
MspR9I	CCNGG	1 cut(s)	743
MvnI	CGCG	1 cut(s)	475
MwoI	GCNNNNNNNGC	5 cut(s)	250, 325, 334, 503, 635
NciI	CCSGG	1 cut(s)	743
NdeII	GATC	5 cut(s)	81, 141, 358, 623, 703
NlaIII	CATG	5 cut(s)	488, 547, 557, 615, 710
NlaIV	GGNNCC	3 cut(s)	59, 200, 594
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	2 cut(s)	547, 615
PagI	TCATGA	1 cut(s)	706
PaqCI	CACCTGC	1 cut(s)	616
PciI	ACATGT	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	578
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	719
PkrI	GCNGC	9 cut(s)	13, 321, 396, 499, 502, 505, 631, 634, 637
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PscI	ACATGT	1 cut(s)	543
PspEI	GGTNACC	1 cut(s)	350
PspFI	CCCAGC	2 cut(s)	150, 493
PspN4I	GGNNCC	3 cut(s)	59, 200, 594
PspOMI	GGGCCC	1 cut(s)	592
PspPI	GGNCC	3 cut(s)	481, 592, 593
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	632
PvuII	CAGCTG	2 cut(s)	425, 629
RsaI	GTAC	2 cut(s)	98, 619
RsaNI	GTAC	2 cut(s)	97, 618
RseI	CAYNNNNRTG	1 cut(s)	610
SaqAI	TTAA	1 cut(s)	654
SatI	GCNGC	9 cut(s)	12, 320, 395, 498, 501, 504, 630, 633, 636
Sau3AI	GATC	5 cut(s)	81, 141, 358, 623, 703
Sau96I	GGNCC	3 cut(s)	481, 592, 593
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	743
SduI	GDGCHC	2 cut(s)	62, 596
SfaNI	GCATC	2 cut(s)	445, 515
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	610
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	2 cut(s)	16, 286
SsiI	CCGC	1 cut(s)	395
SspMI	CTAG	3 cut(s)	347, 645, 748
StyD4I	CCNGG	1 cut(s)	741
TasI	AATT	2 cut(s)	16, 286
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	1 cut(s)	719
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	8 cut(s)	11, 319, 497, 500, 503, 629, 632, 635
TspDTI	ATGAA	5 cut(s)	33, 377, 479, 501, 723
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	481
XceI	RCATGY	2 cut(s)	547, 615
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	3 cut(s)	347, 645, 748
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.