pycom11g03620

THO complex subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
2805184 .. 2808073
2890 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 957 bp
ATGGCAGAAACGGAGGAACCCGCAATACCCTTTAAGAATCTCAGTAGCAGAGAGTACCAGGGCCACAAGAAGAAAGTGCATTCTGTGGCTTGGAACTGCACGGGGACGAAGCTCGCGTCGGGTTCTGTTGATCGAACTGCTAGGGTTTGGCACGTTGAGCCCCATGGACATGGTAAGGCTAAAGATATTGAATTGAAGGGGCACACAGATAGTGTGGATCAGCTGTGTTGGGACCCTAAGCATGCTGATTTAATTGCCACTGCCTCTGGGGACAAGACGGTTCGTCTTTGGGATGCTCGGAGTGGAAAATGTGCACAGCTAGCAGAACTTAGTGGGGAGAACATTAACATCACCTATAAACCTGATGGGACGCACATCGCCGTTGGTAATAGGGATGATGAACTAACAATTTTGGATGTTCGGAAGTTTAAGCCAATTCACAAGCGAAAGTTCAATTATGAGGTTAATGAAATTGCTTGGAGCACAACAAGTGAAATTTTCTTCTTGACGACTGGAAACGGTACAGTTGAAGTACTAGCATACCCATCTCTTAAACCAGTCGACACTCTCATGGCTCATACAGCTGGGTGTTATTGCATTGCCATTGACCCAATTGGAAGATATTTTGCTGTTGGGAGTGCTGATTCCTTGGTGAGCCTGTGGGATATCTCAGAGATGCTCTGTGTGAAAACATTTCCAAAACTTGAATCGCCTGTGAGGACAATAAGCTTCAACCACACTGGAGAGTATCTTGCGTCTGCCAGTGAAGACTTATTCATTGATATATCAAATGTGCAAACCGGCCGGACAGTGCATCAAATTCCATGTAGGGCTGCCATGAACAGCGTTGAGTGGAATCCCAAATCCAATCTACTTGCATATGCTGGAGATGACAAGAACAAATACCAAACTGATGAAGGTGTTTTTAGGATATTTGGCTTCAAAAGTGCAACCTAA

Protein Analysis

319

Amino Acids

35.28

Weight (kDa)

6.31

Isoelectric Point (pI)

27.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 15 - 106 2.2e-15 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 15 - 167 8.6e-15 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 16 - 173 2.3e-06 WDR36/Utp21 first beta-propeller
WD40_Gbeta PF25391 16 - 144 2.3e-08 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 17 - 148 3.2e-19 Prp19 WD40 domain
WD40 PF00400 17 - 50 2e-08 WD domain, G-beta repeat
WDR55 PF24796 17 - 144 3.3e-09 WDR55
Beta-prop_CAF1B_HIR1 PF24105 17 - 106 1.3e-13 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st PF25173 18 - 138 1e-19 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 19 - 144 5.1e-21 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 19 - 135 7.9e-07 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 22 - 295 1.2e-120 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 23 - 175 3.6e-10 Aladin seven-bladed propeller
Beta-prop_TEP1_2nd PF25047 26 - 148 6.7e-08 TEP-1 second beta-propeller
EIF3I PF24805 62 - 172 7.6e-06 EIF3I
WD40 PF00400 64 - 98 2.5e-06 WD domain, G-beta repeat
Beta-prop_EML_2 PF23414 75 - 149 3.3e-10 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR19_1st PF23389 75 - 224 5.7e-10 WDR19 first beta-propeller
WD40_CDC20-Fz PF24807 116 - 295 5.4e-20 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 116 - 296 2e-20 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 117 - 292 7e-26 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 129 - 257 1.2e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2 PF23414 132 - 293 2.4e-17 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 151 - 299 3.1e-14 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 152 - 303 4.6e-18 Prp19 WD40 domain
WD40 PF00400 185 - 222 8.8e-07 WD domain, G-beta repeat
WD40_Gbeta PF25391 188 - 265 2e-08 G protein beta WD-40 repeat protein
EIF3I PF24805 189 - 253 3.2e-06 EIF3I
Beta-prop_WDR36-Utp21_2nd PF25168 210 - 295 4.8e-06 WDR36/Utp21 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 561
AccII CGCG 1 cut(s) 116
AciI CCGC 1 cut(s) 21
AclWI GGATC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 802
AcsI RAATTY 2 cut(s) 495, 819
AfaI GTAC 3 cut(s) 56, 523, 534
AgsI TTSAA 7 cut(s) 191, 196, 454, 530, 707, 733, 943
AhdI GACNNNNNGTC 1 cut(s) 282
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 5 cut(s) 112, 223, 319, 584, 729
AluI AGCT 5 cut(s) 112, 223, 319, 584, 729
Alw21I GWGCWC 2 cut(s) 316, 485
Alw44I GTGCAC 1 cut(s) 312
AlwI GGATC 1 cut(s) 225
AoxI GGCC 2 cut(s) 61, 802
ApaLI GTGCAC 1 cut(s) 312
ApeKI GCWGC 1 cut(s) 833
ApoI RAATTY 2 cut(s) 495, 819
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AspS9I GGNCC 2 cut(s) 61, 232
AsuHPI GGTGA 2 cut(s) 343, 664
AsuNHI GCTAGC 1 cut(s) 319
AvaII GGWCC 1 cut(s) 232
BaeGI GKGCMC 2 cut(s) 204, 316
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 774
Bbv12I GWGCWC 2 cut(s) 316, 485
BbvI GCAGC 1 cut(s) 820
BccI CCATC 2 cut(s) 359, 553
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 1 cut(s) 59
BfaI CTAG 3 cut(s) 141, 320, 536
BisI GCNGC 1 cut(s) 834
BlsI GCNGC 1 cut(s) 835
BmcAI AGTACT 1 cut(s) 534
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 232
BmeRI GACNNNNNGTC 1 cut(s) 282
BmgT120I GGNCC 2 cut(s) 61, 232
BmiI GGNNCC 3 cut(s) 18, 233, 234
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 3 cut(s) 283, 666, 823
BmtI GCTAGC 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 774
BpmI CTGGAG 2 cut(s) 762, 906
Bpu10I CCTNAGC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 58, 163, 648
Bse118I RCCGGY 1 cut(s) 800
Bse1I ACTGG 4 cut(s) 517, 557, 745, 762
Bse3DI GCAATG 1 cut(s) 597
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 3 cut(s) 58, 163, 648
BseGI GGATG 3 cut(s) 298, 400, 421
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 2 cut(s) 55, 684
BseNI ACTGG 4 cut(s) 517, 557, 745, 762
BseSI GKGCMC 2 cut(s) 204, 316
BseX3I CGGCCG 1 cut(s) 802
BseXI GCAGC 1 cut(s) 820
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 805
BshFI GGCC 2 cut(s) 63, 804
BsiEI CGRYCG 1 cut(s) 805
BsiHKAI GWGCWC 2 cut(s) 316, 485
BsiSI CCGG 2 cut(s) 801, 805
BslFI GGGAC 4 cut(s) 118, 245, 284, 382
BsmFI GGGAC 4 cut(s) 118, 245, 284, 382
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 2 cut(s) 63, 804
Bsp1286I GDGCHC 4 cut(s) 162, 204, 316, 485
Bsp143I GATC 2 cut(s) 130, 217
Bsp19I CCATGG 1 cut(s) 163
BspACI CCGC 1 cut(s) 21
BspANI GGCC 2 cut(s) 63, 804
BspCNI CTCAG 2 cut(s) 54, 683
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 3 cut(s) 18, 233, 234
BspOI GCTAGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 597
BsrFI RCCGGY 1 cut(s) 800
BsrI ACTGG 4 cut(s) 517, 557, 745, 762
BssAI RCCGGY 1 cut(s) 800
BssECI CCNNGG 3 cut(s) 58, 163, 648
BssMI GATC 2 cut(s) 130, 217
BssT1I CCWWGG 2 cut(s) 163, 648
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 4 cut(s) 280, 521, 526, 811
BstC8I GCNNGC 3 cut(s) 114, 243, 321
BstDEI CTNAG 4 cut(s) 41, 237, 329, 670
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 3 cut(s) 298, 400, 421
BstFNI CGCG 1 cut(s) 116
BstKTI GATC 2 cut(s) 133, 220
BstMBI GATC 2 cut(s) 130, 217
BstMCI CGRYCG 1 cut(s) 805
BstMWI GCNNNNNNNGC 3 cut(s) 157, 320, 581
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 57
BstSLI GKGCMC 2 cut(s) 204, 316
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 820
BstV2I GAAGAC 1 cut(s) 774
BstXI CCANNNNNNTGG 1 cut(s) 170
BstZI CGGCCG 1 cut(s) 802
BsuRI GGCC 2 cut(s) 63, 804
BtgI CCRYGG 1 cut(s) 163
BtgZI GCGATG 1 cut(s) 361
BtsCI GGATG 3 cut(s) 298, 400, 421
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 4 cut(s) 258, 738, 769, 816
Cac8I GCNNGC 3 cut(s) 114, 243, 321
Cfr10I RCCGGY 1 cut(s) 800
Cfr13I GGNCC 2 cut(s) 61, 232
CseI GACGC 3 cut(s) 105, 379, 744
Csp6I GTAC 3 cut(s) 55, 522, 533
CviAII CATG 6 cut(s) 164, 170, 242, 571, 825, 838
CviQI GTAC 3 cut(s) 55, 522, 533
DdeI CTNAG 4 cut(s) 41, 237, 329, 670
DpnI GATC 2 cut(s) 132, 219
DpnII GATC 2 cut(s) 130, 217
DriI GACNNNNNGTC 1 cut(s) 282
EaeI YGGCCR 1 cut(s) 802
EagI CGGCCG 1 cut(s) 802
Eam1105I GACNNNNNGTC 1 cut(s) 282
EclXI CGGCCG 1 cut(s) 802
Eco130I CCWWGG 2 cut(s) 163, 648
Eco24I GRGCYC 1 cut(s) 162
Eco32I GATATC 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 232
Eco52I CGGCCG 1 cut(s) 802
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 57
EcoRV GATATC 1 cut(s) 667
EcoT14I CCWWGG 2 cut(s) 163, 648
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 2 cut(s) 163, 648
FaeI CATG 6 cut(s) 167, 173, 245, 574, 828, 841
FaqI GGGAC 4 cut(s) 118, 245, 284, 382
FatI CATG 6 cut(s) 163, 169, 241, 570, 824, 837
FauI CCCGC 1 cut(s) 28
FauNDI CATATG 1 cut(s) 880
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 1 cut(s) 834
FokI GGATG 3 cut(s) 305, 407, 428
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 834
FspBI CTAG 3 cut(s) 141, 320, 536
GluI GCNGC 1 cut(s) 834
GsaI CCCAGC 1 cut(s) 588
GsuI CTGGAG 2 cut(s) 762, 906
HaeIII GGCC 2 cut(s) 63, 804
HapII CCGG 2 cut(s) 801, 805
HgaI GACGC 3 cut(s) 105, 379, 744
Hin1II CATG 6 cut(s) 167, 173, 245, 574, 828, 841
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HindIII AAGCTT 1 cut(s) 727
HinfI GANTC 4 cut(s) 37, 644, 707, 856
HpaII CCGG 2 cut(s) 801, 805
HphI GGTGA 2 cut(s) 343, 664
Hpy166II GTNNAC 2 cut(s) 314, 562
Hpy188I TCNGA 3 cut(s) 300, 423, 673
Hpy188III TCNNGA 1 cut(s) 505
Hpy8I GTNNAC 2 cut(s) 314, 562
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 2 cut(s) 190, 911
HpyCH4III ACNGT 4 cut(s) 280, 521, 526, 811
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 8 cut(s) 79, 99, 314, 597, 796, 814, 878, 950
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 320, 581
HpyF3I CTNAG 4 cut(s) 41, 237, 329, 670
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 6 cut(s) 167, 173, 245, 574, 828, 841
KflI GGGWCCC 1 cut(s) 232
Kzo9I GATC 2 cut(s) 130, 217
LmnI GCTCC 1 cut(s) 480
Lsp1109I GCAGC 1 cut(s) 820
LweI GCATC 3 cut(s) 283, 666, 823
MaeI CTAG 3 cut(s) 141, 320, 536
MaeII ACGT 1 cut(s) 153
MalI GATC 2 cut(s) 132, 219
MboI GATC 2 cut(s) 130, 217
MboII GAAGA 4 cut(s) 82, 493, 630, 779
MfeI CAATTG 1 cut(s) 612
MhlI GDGCHC 4 cut(s) 162, 204, 316, 485
MluCI AATT 9 cut(s) 191, 252, 408, 435, 454, 471, 495, 612, 819
MnlI CCTC 4 cut(s) 7, 274, 454, 711
MseI TTAA 6 cut(s) 33, 251, 345, 429, 465, 552
MslI CAYNNNNRTG 2 cut(s) 168, 569
MspA1I CMGCKG 2 cut(s) 223, 584
MspI CCGG 2 cut(s) 801, 805
MspR9I CCNGG 1 cut(s) 59
MunI CAATTG 1 cut(s) 612
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 3 cut(s) 157, 320, 581
NcoI CCATGG 1 cut(s) 163
NdeI CATATG 1 cut(s) 880
NdeII GATC 2 cut(s) 130, 217
NheI GCTAGC 1 cut(s) 319
NlaIII CATG 6 cut(s) 167, 173, 245, 574, 828, 841
NlaIV GGNNCC 3 cut(s) 18, 233, 234
NspI RCATGY 1 cut(s) 245
PaeI GCATGC 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PctI GAATGC 1 cut(s) 79
PfeI GAWTC 4 cut(s) 37, 644, 707, 856
PkrI GCNGC 1 cut(s) 835
PpuMI RGGWCCY 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 584
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 3 cut(s) 18, 233, 234
PspPI GGNCC 2 cut(s) 61, 232
PspPPI RGGWCCY 1 cut(s) 232
PsrI GAACNNNNNNTAC 2 cut(s) 9, 41
PvuII CAGCTG 2 cut(s) 223, 584
RsaI GTAC 3 cut(s) 56, 523, 534
RsaNI GTAC 3 cut(s) 55, 522, 533
RseI CAYNNNNRTG 2 cut(s) 168, 569
SalI GTCGAC 1 cut(s) 560
SaqAI TTAA 6 cut(s) 33, 251, 345, 429, 465, 552
SatI GCNGC 1 cut(s) 834
Sau3AI GATC 2 cut(s) 130, 217
Sau96I GGNCC 2 cut(s) 61, 232
ScaI AGTACT 1 cut(s) 534
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 4 cut(s) 162, 204, 316, 485
SfaNI GCATC 3 cut(s) 283, 666, 823
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 2 cut(s) 168, 569
SphI GCATGC 1 cut(s) 245
Sse9I AATT 9 cut(s) 191, 252, 408, 435, 454, 471, 495, 612, 819
SsiI CCGC 1 cut(s) 21
SspMI CTAG 3 cut(s) 141, 320, 536
StyD4I CCNGG 1 cut(s) 57
StyI CCWWGG 2 cut(s) 163, 648
TaaI ACNGT 4 cut(s) 280, 521, 526, 811
TaiI ACGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 133, 561
TasI AATT 9 cut(s) 191, 252, 408, 435, 454, 471, 495, 612, 819
TatI WGTACW 1 cut(s) 532
TfiI GAWTC 4 cut(s) 37, 644, 707, 856
Tru1I TTAA 6 cut(s) 33, 251, 345, 429, 465, 552
Tru9I TTAA 6 cut(s) 33, 251, 345, 429, 465, 552
TscAI CASTG 4 cut(s) 265, 745, 769, 816
TseI GCWGC 1 cut(s) 833
TspDTI ATGAA 5 cut(s) 414, 483, 766, 854, 930
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 4 cut(s) 265, 745, 769, 816
VneI GTGCAC 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 2 cut(s) 495, 819
XceI RCATGY 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 561
XspI CTAG 3 cut(s) 141, 320, 536
ZrmI AGTACT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.