Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0015072

Physical Location & Seq

Genomic Coordinates Forward (+)

3075825 .. 3078523

Gene Structure 2699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAATACGGTAACCGTTAATTTAGCCCGGAAAAAAGAACAACCGTTAGATGACTTCAGATTCGCGCCTTTTCAGACGCGTGTCAGAGGAACTCAATGCCTGAGCAGCTTCAGGTGGCATAAGAAGTCAAAAACTAGGTCTCAAGGCTACAGGTCTCCATCTCTGTCTGAAAGCCCAAGAAAATTTGCATCTGCGTCTCTCCTCTCCGGTAAAATGCAAGGAGCACTTAAAGCTTTTACATCACACGGGAGCGTTGTGAAAAACGGAGTTTTGAGACACATCCGTCTTGTGAATCCCCTGCTTCAGCCTGTTGCATTTTCACGCTTTGAGTCTGCTACGCCTGCCAGTTCCAGCATCGAAGAGCATGGTTTTGAAAGCACCAGAATTGCAGATGTCTTGAAAGGAAAAGGTAAAGGTGCTGATGGTTCTTGGCTCTGGTGCACAACCGATGACTCTGTTTATGATGCTGTTAAGTCGATGACCCAGCACAATGTTGGAGCCTTAGTTGTTGTGAAACCCGGAGTGCAAAATTCTCTTGCAGGAATCATAACAGAGAGAGATTATCTCCGGAAGATCATAGTTCAGGGAAGATCATCCAAGTCAACAAAGGTTGGGGATATCATGACTGAGGAGAACAAGCTTATCACTGTCACCCCGGACACCAAAGTTTTGCGGGCAATGCAACTTATGACAGATAACCGAATCAGGCACATTCCAGTAATAGACAACGGGGGAATGATTGGAATGGTGTCCATTGGTGACGTGGTTCGTGCTGTGGTGAGCGAGCACCGGGAGGAGCTAGACCGCTTGAATGCTTTTATTCAAGGTGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

279

Amino Acids

30.69

Weight (kDa)

9.96

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	146 - 192	4.2e-07	CBS domain
CBS	PF00571	204 - 260	2e-14	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10860
fragaria_vesca	FvH4_3g22060 FvH4_3g32110 FvH4_3g41290
malus_domestica	MD03G1045900.v1.1 MD11G1048200.v1.1
prunus_persica	Prupe.6G037200_v2.0.a1
pyrus_communis	pycom11g03930
rosa_chinensis	RchiOBHm_Chr5g0074091
rosa_laevigata	RLG00000036454
rosa_multiflora	Rmu_sc0000573.1_g000069
rosa_roxburghii	Rroxscaffold_1G00007300
rosa_rugosa	Rorug03G0243100
rosa_samantha	Rh5DG495300 Rh5DG519500
rosa_wichuraiana	Rw5G045180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	282
AccII	CGCG	2 cut(s)	65, 79
AccIII	TCCGGA	1 cut(s)	567
AciI	CCGC	2 cut(s)	673, 805
AcsI	RAATTY	2 cut(s)	182, 529
AcuI	CTGAAG	3 cut(s)	40, 94, 287
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	4 cut(s)	374, 400, 811, 824
AjiI	CACGTC	1 cut(s)	763
AluBI	AGCT	4 cut(s)	108, 233, 640, 799
AluI	AGCT	4 cut(s)	108, 233, 640, 799
Alw21I	GWGCWC	3 cut(s)	226, 443, 789
Alw26I	GTCTC	4 cut(s)	144, 159, 201, 268
Alw44I	GTGCAC	1 cut(s)	439
Aor13HI	TCCGGA	1 cut(s)	567
ApaLI	GTGCAC	1 cut(s)	439
ApeKI	GCWGC	1 cut(s)	105
ApoI	RAATTY	2 cut(s)	182, 529
ArsI	GACNNNNNNTTYG	4 cut(s)	44, 76, 122, 154
AspLEI	GCGC	1 cut(s)	67
AsuC2I	CCSGG	4 cut(s)	28, 519, 656, 791
AsuHPI	GGTGA	3 cut(s)	643, 770, 790
BaeGI	GKGCMC	1 cut(s)	443
Bbv12I	GWGCWC	3 cut(s)	226, 443, 789
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	2 cut(s)	166, 416
BcnI	CCSGG	4 cut(s)	28, 519, 656, 791
BcoDI	GTCTC	4 cut(s)	144, 159, 201, 268
BfaI	CTAG	3 cut(s)	135, 800, 835
BfmI	CTRYAG	1 cut(s)	148
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	4 cut(s)	28, 519, 656, 791
BmgBI	CACGTC	1 cut(s)	763
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	4 cut(s)	28, 519, 656, 791
BmsI	GCATC	3 cut(s)	197, 363, 454
BoxI	GACNNNNGTC	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	549, 581
Bpu10I	CCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	126
BpuMI	CCSGG	4 cut(s)	28, 519, 656, 791
BsaI	GGTCTC	2 cut(s)	144, 159
BsaJI	CCNNGG	1 cut(s)	654
BsaWI	WCCGGW	2 cut(s)	206, 567
BsaXI	ACNNNNNCTCC	2 cut(s)	489, 519
Bse1I	ACTGG	2 cut(s)	345, 716
Bse3DI	GCAATG	1 cut(s)	684
BseAI	TCCGGA	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	654
BseGI	GGATG	2 cut(s)	279, 593
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	2 cut(s)	92, 618
BseNI	ACTGG	2 cut(s)	345, 716
BseRI	GAGGAG	3 cut(s)	191, 644, 809
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	117
BseYI	CCCAGC	1 cut(s)	483
Bsh1236I	CGCG	2 cut(s)	65, 79
BsiHKAI	GWGCWC	3 cut(s)	226, 443, 789
BsiSI	CCGG	6 cut(s)	28, 207, 519, 568, 656, 790
BsmAI	GTCTC	4 cut(s)	144, 159, 201, 268
BsmBI	CGTCTC	1 cut(s)	201
BsmI	GAATGC	1 cut(s)	817
Bso31I	GGTCTC	2 cut(s)	144, 159
Bsp1286I	GDGCHC	3 cut(s)	226, 443, 789
Bsp13I	TCCGGA	1 cut(s)	567
Bsp143I	GATC	2 cut(s)	573, 590
BspACI	CCGC	2 cut(s)	673, 805
BspCNI	CTCAG	2 cut(s)	93, 619
BspEI	TCCGGA	1 cut(s)	567
BspFNI	CGCG	2 cut(s)	65, 79
BspHI	TCATGA	1 cut(s)	621
BspLI	GGNNCC	1 cut(s)	499
BspQI	GCTCTTC	1 cut(s)	354
BspTNI	GGTCTC	2 cut(s)	144, 159
BsrDI	GCAATG	1 cut(s)	684
BsrI	ACTGG	2 cut(s)	345, 716
BssECI	CCNNGG	1 cut(s)	654
BssMI	GATC	2 cut(s)	573, 590
Bst4CI	ACNGT	4 cut(s)	10, 16, 45, 649
Bst6I	CTCTTC	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	342, 675, 785
BstDEI	CTNAG	3 cut(s)	101, 502, 627
BstEII	GGTNACC	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	279, 593
BstFNI	CGCG	2 cut(s)	65, 79
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	2 cut(s)	576, 593
BstMAI	GTCTC	4 cut(s)	144, 159, 201, 268
BstMBI	GATC	2 cut(s)	573, 590
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 230, 341, 679
BstPAI	GACNNNNGTC	1 cut(s)	80
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	4 cut(s)	26, 517, 654, 789
BstSFI	CTRYAG	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	443
BstUI	CGCG	2 cut(s)	65, 79
BstV1I	GCAGC	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	763
BtsCI	GGATG	2 cut(s)	279, 593
BtsIMutI	CAGTG	1 cut(s)	645
Cac8I	GCNNGC	3 cut(s)	342, 675, 785
CciI	TCATGA	1 cut(s)	621
CfoI	GCGC	1 cut(s)	67
CseI	GACGC	2 cut(s)	85, 183
CviAII	CATG	2 cut(s)	365, 622
DdeI	CTNAG	3 cut(s)	101, 502, 627
DpnI	GATC	2 cut(s)	575, 592
DpnII	GATC	2 cut(s)	573, 590
DrdI	GACNNNNNNGTC	1 cut(s)	282
DseDI	GACNNNNNNGTC	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco31I	GGTCTC	2 cut(s)	144, 159
Eco32I	GATATC	1 cut(s)	619
Eco57I	CTGAAG	3 cut(s)	40, 94, 287
Eco91I	GGTNACC	1 cut(s)	10
EcoO65I	GGTNACC	1 cut(s)	10
EcoRV	GATATC	1 cut(s)	619
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	2 cut(s)	368, 625
FaiI	YATR	7 cut(s)	120, 366, 462, 548, 578, 623, 689
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	2 cut(s)	364, 621
FauI	CCCGC	1 cut(s)	666
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	2 cut(s)	266, 580
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	3 cut(s)	135, 800, 835
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	106
GsaI	CCCAGC	1 cut(s)	487
HapII	CCGG	6 cut(s)	28, 207, 519, 568, 656, 790
HgaI	GACGC	2 cut(s)	85, 183
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	368, 625
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	603
HindII	GTYRAC	1 cut(s)	603
HindIII	AAGCTT	2 cut(s)	231, 638
HinfI	GANTC	6 cut(s)	60, 292, 329, 452, 543, 702
HpaII	CCGG	6 cut(s)	28, 207, 519, 568, 656, 790
HphI	GGTGA	3 cut(s)	643, 770, 790
Hpy166II	GTNNAC	2 cut(s)	441, 603
Hpy188I	TCNGA	4 cut(s)	59, 75, 86, 169
Hpy188III	TCNNGA	3 cut(s)	397, 568, 622
Hpy8I	GTNNAC	2 cut(s)	441, 603
HpyCH4III	ACNGT	4 cut(s)	10, 16, 45, 649
HpyCH4IV	ACGT	1 cut(s)	762
HpyCH4V	TGCA	8 cut(s)	188, 217, 314, 389, 441, 526, 539, 682
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 230, 341, 679
HpyF3I	CTNAG	3 cut(s)	101, 502, 627
HpySE526I	ACGT	1 cut(s)	762
Hsp92II	CATG	2 cut(s)	368, 625
HspAI	GCGC	1 cut(s)	65
Kpn2I	TCCGGA	1 cut(s)	567
Kzo9I	GATC	2 cut(s)	573, 590
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	4 cut(s)	221, 249, 497, 796
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	3 cut(s)	197, 363, 454
MaeI	CTAG	3 cut(s)	135, 800, 835
MaeII	ACGT	1 cut(s)	762
MaeIII	GTNAC	4 cut(s)	10, 649, 758, 830
MalI	GATC	2 cut(s)	575, 592
MboI	GATC	2 cut(s)	573, 590
MboII	GAAGA	3 cut(s)	371, 583, 600
MhlI	GDGCHC	3 cut(s)	226, 443, 789
MluCI	AATT	4 cut(s)	19, 182, 384, 529
MluI	ACGCGT	1 cut(s)	77
MlyI	GAGTC	2 cut(s)	338, 446
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	4 cut(s)	80, 212, 622, 787
MroI	TCCGGA	1 cut(s)	567
MseI	TTAA	3 cut(s)	18, 228, 471
MspI	CCGG	6 cut(s)	28, 207, 519, 568, 656, 790
MspR9I	CCNGG	4 cut(s)	28, 519, 656, 791
Mva1269I	GAATGC	1 cut(s)	817
MvnI	CGCG	2 cut(s)	65, 79
MwoI	GCNNNNNNNGC	4 cut(s)	105, 230, 341, 679
NciI	CCSGG	4 cut(s)	28, 519, 656, 791
NdeII	GATC	2 cut(s)	573, 590
NlaIII	CATG	2 cut(s)	368, 625
NlaIV	GGNNCC	1 cut(s)	499
NmuCI	GTSAC	2 cut(s)	649, 758
PagI	TCATGA	1 cut(s)	621
PciSI	GCTCTTC	1 cut(s)	354
PctI	GAATGC	1 cut(s)	817
PfeI	GAWTC	4 cut(s)	60, 292, 543, 702
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	2 cut(s)	337, 446
PpsI	GAGTC	2 cut(s)	337, 446
PshAI	GACNNNNGTC	1 cut(s)	80
PspEI	GGTNACC	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	483
PspN4I	GGNNCC	1 cut(s)	499
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	18, 228, 471
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	2 cut(s)	573, 590
SchI	GAGTC	2 cut(s)	338, 446
ScrFI	CCNGG	4 cut(s)	28, 519, 656, 791
SduI	GDGCHC	3 cut(s)	226, 443, 789
SfaNI	GCATC	3 cut(s)	197, 363, 454
SfcI	CTRYAG	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	4 cut(s)	19, 182, 384, 529
SsiI	CCGC	2 cut(s)	673, 805
SspMI	CTAG	3 cut(s)	135, 800, 835
StyD4I	CCNGG	4 cut(s)	26, 517, 654, 789
TaaI	ACNGT	4 cut(s)	10, 16, 45, 649
TaiI	ACGT	1 cut(s)	765
TaqI	TCGA	2 cut(s)	357, 476
TasI	AATT	4 cut(s)	19, 182, 384, 529
TfiI	GAWTC	4 cut(s)	60, 292, 543, 702
Tru1I	TTAA	3 cut(s)	18, 228, 471
Tru9I	TTAA	3 cut(s)	18, 228, 471
TscAI	CASTG	1 cut(s)	652
TseFI	GTSAC	2 cut(s)	649, 758
TseI	GCWGC	1 cut(s)	105
Tsp45I	GTSAC	2 cut(s)	649, 758
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	272, 279
TspRI	CASTG	1 cut(s)	652
VneI	GTGCAC	1 cut(s)	439
XapI	RAATTY	2 cut(s)	182, 529
XcmI	CCANNNNNNNNNTGG	2 cut(s)	491, 760
XspI	CTAG	3 cut(s)	135, 800, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.