pycom11g05020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012600
Physical Location & Seq
Forward (+)
3908096 .. 3909598
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 606 bp
ATGAGAATAACTTCTCTCTTTTTTCCCCCACAACTTGTACTTTATAAGTACATATATTCATCAGCAAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCCATGGTCTCCAAGGTGCAGATGAAGAGAGCGCCAGTATCCAAGAAACTGCTAACCCTTCGCTCCATCTCTAAGTCCCATGCGCACAGTAAAACCTCAATTATATTGGATGCATCAAAGTACATACAAAACTTAAAGCGAAAAGTGGAGGAAATGAATCAACAGATGATTGCCTCAACGGAAACGTCAACTTCCCAAAACTCCTTCCCTGTGCAACTCAAAGTCGAAGCTGGAGAGAGAGGCTTTCAGATTAAGATGTTCACTGAAAAAAGATGCAGTGGGTTACTTGTTTTCATATTGGAAGCTTTTGGAGAGCTAGGCCTTGATGTGCATCAAGCTAGGGTTTCTTGTTCCAACAATTTTCTTCTAGAAGCTGTTGGAACAATCAAGGATAATCCAAGTGCTGACCAGAAAGATGTTGAGGTAGTGAAAGAAGCGATGTTGCAAGCCATTCAAAACTGGAGTGAAGTTACCCAACAACAAGAACAATGCAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

23.09

Weight (kDa)

9.24

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-TF_ACT-like_plant PF22754 107 - 187 6.6e-21 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 45
Acc16I TGCGCA 1 cut(s) 189
AfaI GTAC 3 cut(s) 39, 50, 227
AgsI TTSAA 1 cut(s) 560
AluBI AGCT 5 cut(s) 335, 410, 421, 443, 479
AluI AGCT 5 cut(s) 335, 410, 421, 443, 479
Alw26I GTCTC 1 cut(s) 118
AoxI GGCC 2 cut(s) 105, 424
Asp700I GAANNNNTTC 1 cut(s) 10
AspLEI GCGC 2 cut(s) 139, 190
BccI CCATC 1 cut(s) 179
BciVI GTATCC 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 3 cut(s) 422, 444, 473
BfoI RGCGCY 1 cut(s) 140
BfuI GTATCC 1 cut(s) 154
BmsI GCATC 4 cut(s) 205, 227, 368, 445
BpmI CTGGAG 2 cut(s) 357, 586
BsaBI GATNNNNATC 1 cut(s) 435
BsaI GGTCTC 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 108, 117
Bse1I ACTGG 2 cut(s) 140, 569
Bse8I GATNNNNATC 1 cut(s) 435
BseDI CCNNGG 2 cut(s) 108, 117
BseGI GGATG 1 cut(s) 220
BseJI GATNNNNATC 1 cut(s) 435
BseNI ACTGG 2 cut(s) 140, 569
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 2 cut(s) 107, 426
BslFI GGGAC 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 2 cut(s) 107, 426
Bso31I GGTCTC 1 cut(s) 118
Bsp19I CCATGG 1 cut(s) 108
BspANI GGCC 2 cut(s) 107, 426
BspTNI GGTCTC 1 cut(s) 118
BsrI ACTGG 2 cut(s) 140, 569
BssECI CCNNGG 2 cut(s) 108, 117
BssT1I CCWWGG 2 cut(s) 108, 117
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 2 cut(s) 64, 125
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 220
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 2 cut(s) 139, 190
BstMAI GTCTC 1 cut(s) 118
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 2 cut(s) 107, 426
BtgI CCRYGG 1 cut(s) 108
BtgZI GCGATG 1 cut(s) 557
BtsCI GGATG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 366, 388
Cac8I GCNNGC 1 cut(s) 552
CfoI GCGC 2 cut(s) 139, 190
Csp6I GTAC 3 cut(s) 38, 49, 226
CviAII CATG 2 cut(s) 109, 185
CviJI RGCY 9 cut(s) 107, 335, 348, 410, 421, 426, 443, 479, 554
CviKI_1 RGCY 9 cut(s) 107, 335, 348, 410, 421, 426, 443, 479, 554
CviQI GTAC 3 cut(s) 38, 49, 226
DdeI CTNAG 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 64, 125
EarI CTCTTC 2 cut(s) 64, 125
Eco130I CCWWGG 2 cut(s) 108, 117
Eco147I AGGCCT 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 118
EcoT14I CCWWGG 2 cut(s) 108, 117
EcoT22I ATGCAT 1 cut(s) 220
ErhI CCWWGG 2 cut(s) 108, 117
FaeI CATG 2 cut(s) 112, 188
FaiI YATR 8 cut(s) 45, 53, 55, 110, 186, 209, 230, 401
FaqI GGGAC 1 cut(s) 166
FatI CATG 2 cut(s) 108, 184
FokI GGATG 1 cut(s) 227
FspAI RTGCGCAY 1 cut(s) 189
FspBI CTAG 3 cut(s) 422, 444, 473
FspI TGCGCA 1 cut(s) 189
GlaI GCGC 2 cut(s) 138, 189
GsuI CTGGAG 2 cut(s) 357, 586
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 2 cut(s) 107, 426
HhaI GCGC 2 cut(s) 139, 190
Hin1II CATG 2 cut(s) 112, 188
Hin6I GCGC 2 cut(s) 137, 188
HinP1I GCGC 2 cut(s) 137, 188
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 1 cut(s) 262
Hpy166II GTNNAC 2 cut(s) 294, 366
Hpy188I TCNGA 1 cut(s) 354
Hpy188III TCNNGA 1 cut(s) 473
Hpy8I GTNNAC 2 cut(s) 294, 366
HpyAV CCTTC 2 cut(s) 173, 319
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 290
HpyCH4V TGCA 7 cut(s) 124, 218, 319, 381, 436, 550, 597
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 290
Hsp92II CATG 2 cut(s) 112, 188
HspAI GCGC 2 cut(s) 137, 188
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 5 cut(s) 153, 321, 327, 527, 550
LweI GCATC 4 cut(s) 205, 227, 368, 445
MaeI CTAG 3 cut(s) 422, 444, 473
MaeII ACGT 1 cut(s) 290
MaeIII GTNAC 2 cut(s) 387, 574
MboII GAAGA 3 cut(s) 81, 142, 461
MluCI AATT 2 cut(s) 204, 463
MmeI TCCRAC 2 cut(s) 463, 483
MnlI CCTC 6 cut(s) 97, 211, 247, 289, 338, 520
Mph1103I ATGCAT 1 cut(s) 220
MroXI GAANNNNTTC 1 cut(s) 10
MseI TTAA 3 cut(s) 239, 357, 604
NcoI CCATGG 1 cut(s) 108
NlaIII CATG 2 cut(s) 112, 188
NsbI TGCGCA 1 cut(s) 189
NsiI ATGCAT 1 cut(s) 220
PceI AGGCCT 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 262
PsiI TTATAA 1 cut(s) 45
RsaI GTAC 3 cut(s) 39, 50, 227
RsaNI GTAC 3 cut(s) 38, 49, 226
SaqAI TTAA 3 cut(s) 239, 357, 604
SetI ASST 9 cut(s) 123, 203, 293, 337, 412, 423, 445, 481, 531
SfaNI GCATC 4 cut(s) 205, 227, 368, 445
Sse9I AATT 2 cut(s) 204, 463
SseBI AGGCCT 1 cut(s) 426
SspMI CTAG 3 cut(s) 422, 444, 473
StuI AGGCCT 1 cut(s) 426
StyI CCWWGG 2 cut(s) 108, 117
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 1 cut(s) 293
TaqI TCGA 1 cut(s) 330
TasI AATT 2 cut(s) 204, 463
TatI WGTACW 3 cut(s) 37, 48, 225
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 3 cut(s) 239, 357, 604
Tru9I TTAA 3 cut(s) 239, 357, 604
TscAI CASTG 2 cut(s) 373, 388
TspDTI ATGAA 4 cut(s) 48, 143, 275, 388
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 2 cut(s) 373, 388
XbaI TCTAGA 1 cut(s) 472
XmnI GAANNNNTTC 1 cut(s) 10
XspI CTAG 3 cut(s) 422, 444, 473
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.