pycom11g06760

Phosphomethylpyrimidine synthase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
5178681 .. 5179739
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1059 bp
ATGTACTATGCTAAGCAGGGAATTATAACCGAGGAGATGTTGTACTGTGCTGCTCGTGAGAAGCTTGACCCAGAGTTTGTGAGATCAGAGGTGGCTCGTGGGCGGGCAATTATCCCTTCCAATAAGAAGCACTTGGAGCTGGAGCCAATGATCGTTGGGAGAAAATTTCTGGTCAAGGTCAATGCAAACATAGGAAACTCTGCTGTTGCCAGCTCTATCGAAGAGGAAGTTTATAAGGTCCAATGGGCAACGATGTGGGGTGCTGACACTGTCATGGATCTCTCTACAGGACGCCACATCCATGAGACCCGTGAGTGGATACTACGTAACTCCCCTGTGCCAGTAGGGACAGTACCCATTTATCAAGCGCTTGAAAAAGTGGACGGAATTGCAGAAAACCTGAACTGGGAAGTGTTCAGAGAAACTCTTATTGAACAAGCCGAGCAGGGTGTAGATTACTTCACCATCCATGCCGGGGTTCTACTGCGGTACATCCCACTAACAGCAAAGCGTATGACAGGAATTGTTTCACGAGGAGGATCCATTCATGCAAAGTGGTGCTTAGCTTATCACAAAGAGAATTTTGCTTATGAGCACTGGGATGACATACTCGACATCTGCAATCAATATGATGTCGCCCTGTCAATTGGTGATGGGCTGAGACCTGGTTCGATTTATGATGCTAATGACACTGCACAGTTTGCAGAGCTGTTAACTCAGGGAGAACTGACCCGAAGGGCATGGGAAAAGGATGTGCAGGTAATGAATGAAGGACCTGGACATGTTCCAATGCACAAGATTCCTGAAAACATGAAAAAACAGCTTGAATGGTGTAATGAAGCGCCCTTCTACACTCTTGGTCCTCTAACAACTGATATTGCTCCTGGATACGATCACATCACCTCTGCCATTGGTGCTGCCAACATTGGGGCTCTAGGCACTGCCCTTCTCTGTTACGTAACCCCTAAGGAGCACCTGGGATTGCCAAACCGGGATGATGTGAAGGCTGGAGTTATAGCATATAAGATAGCTGCTCATGCCGCTTTTAGATCGATCTAG

Protein Analysis

353

Amino Acids

39.37

Weight (kDa)

5.67

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ThiC_Rad_SAM PF01964 1 - 348 8.7e-160 Radical SAM ThiC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 26, 234
Acc36I ACCTGC 1 cut(s) 748
AciI CCGC 3 cut(s) 103, 487, 1041
AclWI GGATC 3 cut(s) 285, 534, 547
AcsI RAATTY 2 cut(s) 164, 580
AcyI GRCGYC 1 cut(s) 292
AfaI GTAC 4 cut(s) 5, 44, 354, 491
AfeI AGCGCT 1 cut(s) 369
AfiI CCNNNNNNNGG 4 cut(s) 315, 406, 475, 927
AflIII ACRYGT 1 cut(s) 781
AgsI TTSAA 3 cut(s) 374, 434, 827
AjnI CCWGG 4 cut(s) 664, 775, 883, 975
AluBI AGCT 7 cut(s) 64, 139, 213, 566, 709, 823, 1031
AluI AGCT 7 cut(s) 64, 139, 213, 566, 709, 823, 1031
Alw21I GWGCWC 2 cut(s) 597, 975
Alw26I GTCTC 2 cut(s) 299, 655
AlwI GGATC 3 cut(s) 285, 534, 547
Aor51HI AGCGCT 1 cut(s) 369
ApeKI GCWGC 3 cut(s) 50, 917, 1031
ApoI RAATTY 2 cut(s) 164, 580
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
Asp700I GAANNNNTTC 1 cut(s) 526
AspLEI GCGC 2 cut(s) 370, 844
AspS9I GGNCC 3 cut(s) 238, 773, 860
AsuC2I CCSGG 2 cut(s) 475, 992
AsuHPI GGTGA 3 cut(s) 454, 662, 892
AvaII GGWCC 3 cut(s) 238, 773, 860
AxyI CCTNAGG 1 cut(s) 966
BamHI GGATCC 1 cut(s) 539
BanII GRGCYC 1 cut(s) 934
BauI CACGAG 3 cut(s) 54, 96, 531
Bbv12I GWGCWC 2 cut(s) 597, 975
BbvI GCAGC 3 cut(s) 37, 904, 1018
BccI CCATC 2 cut(s) 473, 647
BciT130I CCWGG 4 cut(s) 666, 777, 885, 977
BciVI GTATCC 2 cut(s) 312, 881
BcnI CCSGG 2 cut(s) 475, 992
BcoDI GTCTC 2 cut(s) 299, 655
BfaI CTAG 2 cut(s) 935, 1057
BfmI CTRYAG 1 cut(s) 285
BfoI RGCGCY 2 cut(s) 371, 845
BfuAI ACCTGC 1 cut(s) 748
BfuI GTATCC 2 cut(s) 312, 881
BisI GCNGC 4 cut(s) 51, 918, 1032, 1041
BlpI GCTNAGC 2 cut(s) 12, 562
BlsI GCNGC 4 cut(s) 52, 919, 1033, 1042
Bme1390I CCNGG 6 cut(s) 475, 666, 777, 885, 977, 992
Bme18I GGWCC 3 cut(s) 238, 773, 860
BmgT120I GGNCC 3 cut(s) 238, 773, 860
BmiI GGNNCC 2 cut(s) 144, 541
BmrFI CCNGG 6 cut(s) 475, 666, 777, 885, 977, 992
BmrI ACTGGG 2 cut(s) 415, 607
BmsI GCATC 1 cut(s) 670
BmuI ACTGGG 2 cut(s) 415, 607
BpmI CTGGAG 2 cut(s) 161, 1029
Bpu1102I GCTNAGC 2 cut(s) 12, 562
BpuMI CCSGG 2 cut(s) 475, 992
Bsa29I ATCGAT 1 cut(s) 1052
BsaAI YACGTR 2 cut(s) 326, 958
BsaHI GRCGYC 1 cut(s) 292
BsaI GGTCTC 2 cut(s) 299, 655
BsaJI CCNNGG 3 cut(s) 30, 474, 976
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 4 cut(s) 315, 406, 475, 927
Bse1I ACTGG 3 cut(s) 341, 410, 602
Bse21I CCTNAGG 1 cut(s) 966
BseBI CCWGG 4 cut(s) 666, 777, 885, 977
BseCI ATCGAT 1 cut(s) 1052
BseDI CCNNGG 3 cut(s) 30, 474, 976
BseGI GGATG 6 cut(s) 297, 465, 492, 607, 757, 1000
BseLI CCNNNNNNNGG 4 cut(s) 315, 406, 475, 927
BseMII CTCAG 2 cut(s) 650, 731
BseNI ACTGG 3 cut(s) 341, 410, 602
BseRI GAGGAG 2 cut(s) 47, 549
BseXI GCAGC 3 cut(s) 37, 904, 1018
BsgI GTGCAG 2 cut(s) 678, 776
BshVI ATCGAT 1 cut(s) 1052
BsiHKAI GWGCWC 2 cut(s) 597, 975
BsiSI CCGG 2 cut(s) 474, 991
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 4 cut(s) 315, 406, 475, 927
BsmAI GTCTC 2 cut(s) 299, 655
BsmFI GGGAC 1 cut(s) 361
Bso31I GGTCTC 2 cut(s) 299, 655
Bsp1286I GDGCHC 3 cut(s) 597, 934, 975
Bsp143I GATC 7 cut(s) 83, 150, 277, 539, 892, 1049, 1053
Bsp1720I GCTNAGC 2 cut(s) 12, 562
BspACI CCGC 3 cut(s) 103, 487, 1041
BspCNI CTCAG 2 cut(s) 651, 730
BspDI ATCGAT 1 cut(s) 1052
BspLI GGNNCC 2 cut(s) 144, 541
BspMI ACCTGC 1 cut(s) 748
BspPI GGATC 3 cut(s) 285, 534, 547
BspTNI GGTCTC 2 cut(s) 299, 655
BsrI ACTGG 3 cut(s) 341, 410, 602
BssECI CCNNGG 3 cut(s) 30, 474, 976
BssMI GATC 7 cut(s) 83, 150, 277, 539, 892, 1049, 1053
BssNI GRCGYC 1 cut(s) 292
BssSI CACGAG 3 cut(s) 54, 96, 531
Bst2BI CACGAG 3 cut(s) 54, 96, 531
Bst2UI CCWGG 4 cut(s) 666, 777, 885, 977
Bst4CI ACNGT 4 cut(s) 47, 271, 352, 699
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 292
BstAPI GCANNNNNTGC 1 cut(s) 701
BstBAI YACGTR 2 cut(s) 326, 958
BstC8I GCNNGC 2 cut(s) 105, 211
BstDEI CTNAG 5 cut(s) 12, 562, 659, 717, 966
BstF5I GGATG 6 cut(s) 297, 465, 492, 607, 757, 1000
BstH2I RGCGCY 2 cut(s) 371, 845
BstHHI GCGC 2 cut(s) 370, 844
BstKTI GATC 7 cut(s) 86, 153, 280, 542, 895, 1052, 1056
BstMAI GTCTC 2 cut(s) 299, 655
BstMBI GATC 7 cut(s) 83, 150, 277, 539, 892, 1049, 1053
BstMWI GCNNNNNNNGC 5 cut(s) 136, 701, 914, 1037, 1040
BstNI CCWGG 4 cut(s) 666, 777, 885, 977
BstNSI RCATGY 1 cut(s) 785
BstSCI CCNGG 6 cut(s) 473, 664, 775, 883, 975, 990
BstSFI CTRYAG 1 cut(s) 285
BstSNI TACGTA 2 cut(s) 326, 958
BstV1I GCAGC 3 cut(s) 37, 904, 1018
BstX2I RGATCY 2 cut(s) 277, 539
BstYI RGATCY 2 cut(s) 277, 539
Bsu15I ATCGAT 1 cut(s) 1052
Bsu36I CCTNAGG 1 cut(s) 966
BsuI GTATCC 2 cut(s) 312, 881
BsuTUI ATCGAT 1 cut(s) 1052
BtsCI GGATG 6 cut(s) 297, 465, 492, 607, 757, 1000
BtsI GCAGTG 2 cut(s) 690, 939
BtsIMutI CAGTG 4 cut(s) 267, 595, 690, 939
BveI ACCTGC 1 cut(s) 748
Cac8I GCNNGC 2 cut(s) 105, 211
CfoI GCGC 2 cut(s) 370, 844
Cfr13I GGNCC 3 cut(s) 238, 773, 860
ClaI ATCGAT 1 cut(s) 1052
CseI GACGC 1 cut(s) 300
CsiI ACCWGGT 1 cut(s) 664
Csp6I GTAC 4 cut(s) 4, 43, 353, 490
CviAII CATG 8 cut(s) 274, 302, 470, 548, 741, 782, 811, 1037
CviQI GTAC 4 cut(s) 4, 43, 353, 490
DdeI CTNAG 5 cut(s) 12, 562, 659, 717, 966
DpnI GATC 7 cut(s) 85, 152, 279, 541, 894, 1051, 1055
DpnII GATC 7 cut(s) 83, 150, 277, 539, 892, 1049, 1053
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco105I TACGTA 2 cut(s) 326, 958
Eco24I GRGCYC 1 cut(s) 934
Eco31I GGTCTC 2 cut(s) 299, 655
Eco47I GGWCC 3 cut(s) 238, 773, 860
Eco47III AGCGCT 1 cut(s) 369
Eco81I CCTNAGG 1 cut(s) 966
EcoO109I RGGNCCY 1 cut(s) 773
EcoRII CCWGG 4 cut(s) 664, 775, 883, 975
EcoT38I GRGCYC 1 cut(s) 934
FaeI CATG 8 cut(s) 277, 305, 473, 551, 744, 785, 814, 1040
FalI AAGNNNNNCTT 4 cut(s) 116, 148, 545, 577
FaqI GGGAC 1 cut(s) 361
FatI CATG 8 cut(s) 273, 301, 469, 547, 740, 781, 810, 1036
FauI CCCGC 1 cut(s) 96
Fnu4HI GCNGC 4 cut(s) 51, 918, 1032, 1041
FokI GGATG 6 cut(s) 284, 452, 479, 614, 764, 1007
FriOI GRGCYC 1 cut(s) 934
Fsp4HI GCNGC 4 cut(s) 51, 918, 1032, 1041
FspBI CTAG 2 cut(s) 935, 1057
GlaI GCGC 2 cut(s) 369, 843
GluI GCNGC 4 cut(s) 51, 918, 1032, 1041
GsuI CTGGAG 2 cut(s) 161, 1029
HaeII RGCGCY 2 cut(s) 371, 845
HapII CCGG 2 cut(s) 474, 991
HgaI GACGC 1 cut(s) 300
HhaI GCGC 2 cut(s) 370, 844
Hin1I GRCGYC 1 cut(s) 292
Hin1II CATG 8 cut(s) 277, 305, 473, 551, 744, 785, 814, 1040
Hin6I GCGC 2 cut(s) 368, 842
HinP1I GCGC 2 cut(s) 368, 842
HincII GTYRAC 1 cut(s) 714
HindII GTYRAC 1 cut(s) 714
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 1 cut(s) 799
HpaI GTTAAC 1 cut(s) 714
HpaII CCGG 2 cut(s) 474, 991
HphI GGTGA 3 cut(s) 454, 662, 892
Hpy166II GTNNAC 2 cut(s) 382, 714
Hpy188I TCNGA 2 cut(s) 88, 419
Hpy188III TCNNGA 3 cut(s) 56, 531, 803
Hpy8I GTNNAC 2 cut(s) 382, 714
HpyAV CCTTC 6 cut(s) 126, 729, 764, 856, 956, 997
HpyCH4III ACNGT 4 cut(s) 47, 271, 352, 699
HpyCH4IV ACGT 2 cut(s) 325, 957
HpyCH4V TGCA 8 cut(s) 185, 392, 551, 621, 695, 704, 757, 793
HpyF10VI GCNNNNNNNGC 5 cut(s) 136, 701, 914, 1037, 1040
HpyF3I CTNAG 5 cut(s) 12, 562, 659, 717, 966
HpySE526I ACGT 2 cut(s) 325, 957
Hsp92I GRCGYC 1 cut(s) 292
Hsp92II CATG 8 cut(s) 277, 305, 473, 551, 744, 785, 814, 1040
HspAI GCGC 2 cut(s) 368, 842
KspAI GTTAAC 1 cut(s) 714
Kzo9I GATC 7 cut(s) 83, 150, 277, 539, 892, 1049, 1053
LmnI GCTCC 4 cut(s) 136, 142, 886, 970
Lsp1109I GCAGC 3 cut(s) 37, 904, 1018
LweI GCATC 1 cut(s) 670
MabI ACCWGGT 1 cut(s) 664
MaeI CTAG 2 cut(s) 935, 1057
MaeII ACGT 2 cut(s) 325, 957
MaeIII GTNAC 3 cut(s) 326, 953, 958
MalI GATC 7 cut(s) 85, 152, 279, 541, 894, 1051, 1055
MboI GATC 7 cut(s) 83, 150, 277, 539, 892, 1049, 1053
MboII GAAGA 1 cut(s) 233
MfeI CAATTG 1 cut(s) 645
MflI RGATCY 2 cut(s) 277, 539
MhlI GDGCHC 3 cut(s) 597, 934, 975
MluCI AATT 7 cut(s) 21, 108, 164, 387, 522, 580, 645
MnlI CCTC 7 cut(s) 25, 82, 217, 527, 530, 873, 913
MroXI GAANNNNTTC 1 cut(s) 526
MseI TTAA 1 cut(s) 713
MslI CAYNNNNRTG 3 cut(s) 272, 300, 600
MspI CCGG 2 cut(s) 474, 991
MspR9I CCNGG 6 cut(s) 475, 666, 777, 885, 977, 992
MunI CAATTG 1 cut(s) 645
MvaI CCWGG 4 cut(s) 666, 777, 885, 977
MwoI GCNNNNNNNGC 5 cut(s) 136, 701, 914, 1037, 1040
NciI CCSGG 2 cut(s) 475, 992
NdeII GATC 7 cut(s) 83, 150, 277, 539, 892, 1049, 1053
NlaIII CATG 8 cut(s) 277, 305, 473, 551, 744, 785, 814, 1040
NlaIV GGNNCC 2 cut(s) 144, 541
NmeAIII GCCGAG 1 cut(s) 466
NspI RCATGY 1 cut(s) 785
PciI ACATGT 1 cut(s) 781
PdmI GAANNNNTTC 1 cut(s) 526
PfeI GAWTC 1 cut(s) 799
PflFI GACNNNGTC 1 cut(s) 269
PfoI TCCNGGA 1 cut(s) 883
PkrI GCNGC 4 cut(s) 52, 919, 1033, 1042
Ppu21I YACGTR 2 cut(s) 326, 958
PpuMI RGGWCCY 1 cut(s) 773
PscI ACATGT 1 cut(s) 781
PsiI TTATAA 2 cut(s) 26, 234
Psp5II RGGWCCY 1 cut(s) 773
Psp6I CCWGG 4 cut(s) 664, 775, 883, 975
PspGI CCWGG 4 cut(s) 664, 775, 883, 975
PspN4I GGNNCC 2 cut(s) 144, 541
PspPI GGNCC 3 cut(s) 238, 773, 860
PspPPI RGGWCCY 1 cut(s) 773
PsuI RGATCY 2 cut(s) 277, 539
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 4 cut(s) 5, 44, 354, 491
RsaNI GTAC 4 cut(s) 4, 43, 353, 490
RseI CAYNNNNRTG 3 cut(s) 272, 300, 600
SaqAI TTAA 1 cut(s) 713
SatI GCNGC 4 cut(s) 51, 918, 1032, 1041
Sau3AI GATC 7 cut(s) 83, 150, 277, 539, 892, 1049, 1053
Sau96I GGNCC 3 cut(s) 238, 773, 860
ScrFI CCNGG 6 cut(s) 475, 666, 777, 885, 977, 992
SduI GDGCHC 3 cut(s) 597, 934, 975
SexAI ACCWGGT 1 cut(s) 664
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 1 cut(s) 285
SinI GGWCC 3 cut(s) 238, 773, 860
SmiMI CAYNNNNRTG 3 cut(s) 272, 300, 600
SnaBI TACGTA 2 cut(s) 326, 958
Sse9I AATT 7 cut(s) 21, 108, 164, 387, 522, 580, 645
SsiI CCGC 3 cut(s) 103, 487, 1041
SspMI CTAG 2 cut(s) 935, 1057
StyD4I CCNGG 6 cut(s) 473, 664, 775, 883, 975, 990
TaaI ACNGT 4 cut(s) 47, 271, 352, 699
TaiI ACGT 2 cut(s) 328, 960
TaqI TCGA 4 cut(s) 219, 612, 671, 1052
TasI AATT 7 cut(s) 21, 108, 164, 387, 522, 580, 645
TatI WGTACW 2 cut(s) 3, 42
TauI GCSGC 1 cut(s) 1043
TfiI GAWTC 1 cut(s) 799
Tru1I TTAA 1 cut(s) 713
Tru9I TTAA 1 cut(s) 713
TscAI CASTG 4 cut(s) 274, 602, 697, 946
TseI GCWGC 3 cut(s) 50, 917, 1031
TspDTI ATGAA 5 cut(s) 536, 779, 783, 827, 852
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 4 cut(s) 274, 602, 697, 946
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 3 cut(s) 238, 773, 860
XapI RAATTY 2 cut(s) 164, 580
XceI RCATGY 1 cut(s) 785
XmnI GAANNNNTTC 1 cut(s) 526
XspI CTAG 2 cut(s) 935, 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.