pycom11g08060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0014281
Physical Location & Seq
Reverse (-)
6184816 .. 6185208
393 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGGAGATTTACAATGCTTGCAACACCAAAGCCGATACAGGGAAGGCTCCAACTAGGTTACAACAGCGTGCCCCGGTGTCTCTTCAGCTTGATCAAATCGCAAGCACTGCCTCCACCAACACTTTATACGAGGATGCTTCAATGACGATCCCATTACTGTCTCCGGTAGTCATTCCATCTCCAAATCCAGTGGCAGTGGTGATAGAAAAAGGCGGTGATCAGAACGTGAGAAGTAGTATTGCACCACCCTTTCCGGCTGCAAGCGGGTGGCAACACCCGGCTGCAGGCGGCTGGCATCACCCGGCTCTGGCTCCTTTTGTGGATCCCTCAACGTTGTTTACCGTGTTTCAAACCCAGTGCATGATCGTGAACCAGCGCAGTACTGACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

13.88

Weight (kDa)

5.79

Isoelectric Point (pI)

61.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07473 AT1G07476
fragaria_vesca FvH4_3g36931
prunus_persica Prupe.6G070600_v2.0.a1
pyrus_communis pycom11g08060
rosa_chinensis RchiOBHm_Chr5g0066341
rosa_laevigata RLG00000035852
rosa_multiflora Rmu_sc0006887.1_g000002 Rmu_ssc0000249.1_g000002 Rmu_ssc0000249.1_g000005
rosa_samantha Rh5AG435900 Rh5BG452300 Rh5CG474500 Rh5CG474800 Rh5DG467100 Rh5DG467300
rosa_wichuraiana Rw5G040830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 213, 264, 288
AclI AACGTT 1 cut(s) 332
AclWI GGATC 3 cut(s) 142, 317, 330
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 1 cut(s) 382
AfiI CCNNNNNNNGG 3 cut(s) 39, 284, 307
AgsI TTSAA 2 cut(s) 141, 350
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 84, 165
AlwI GGATC 3 cut(s) 142, 317, 330
ApeKI GCWGC 2 cut(s) 257, 281
AspLEI GCGC 1 cut(s) 378
AsuC2I CCSGG 3 cut(s) 74, 278, 302
AsuHPI GGTGA 3 cut(s) 211, 227, 290
BaeGI GKGCMC 1 cut(s) 73
BamHI GGATCC 1 cut(s) 322
BbvI GCAGC 2 cut(s) 244, 268
BccI CCATC 1 cut(s) 184
BclI TGATCA 2 cut(s) 91, 217
BcnI CCSGG 3 cut(s) 74, 278, 302
BcoDI GTCTC 2 cut(s) 84, 165
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 282
BisI GCNGC 3 cut(s) 258, 282, 289
BlsI GCNGC 3 cut(s) 259, 283, 290
BmcAI AGTACT 1 cut(s) 382
Bme1390I CCNGG 3 cut(s) 74, 278, 302
BmiI GGNNCC 3 cut(s) 48, 312, 324
BmrFI CCNGG 3 cut(s) 74, 278, 302
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 2 cut(s) 124, 304
BmuI ACTGGG 1 cut(s) 349
BpuMI CCSGG 3 cut(s) 74, 278, 302
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 284, 307
Bse1I ACTGG 2 cut(s) 188, 355
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 3 cut(s) 39, 284, 307
BseNI ACTGG 2 cut(s) 188, 355
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 2 cut(s) 244, 268
BsiSI CCGG 5 cut(s) 74, 164, 254, 278, 302
BslI CCNNNNNNNGG 3 cut(s) 39, 284, 307
BsmAI GTCTC 2 cut(s) 84, 165
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 5 cut(s) 91, 147, 217, 322, 363
BspACI CCGC 3 cut(s) 213, 264, 288
BspLI GGNNCC 3 cut(s) 48, 312, 324
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 3 cut(s) 142, 317, 330
BsrI ACTGG 2 cut(s) 188, 355
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 5 cut(s) 91, 147, 217, 322, 363
Bst4CI ACNGT 2 cut(s) 159, 343
Bst6I CTCTTC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 107
BstC8I GCNNGC 6 cut(s) 19, 69, 103, 262, 286, 293
BstF5I GGATG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 5 cut(s) 94, 150, 220, 325, 366
BstMAI GTCTC 2 cut(s) 84, 165
BstMBI GATC 5 cut(s) 91, 147, 217, 322, 363
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 72, 276, 300
BstSFI CTRYAG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 244, 268
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BtsCI GGATG 1 cut(s) 139
BtsI GCAGTG 2 cut(s) 105, 201
BtsIMutI CAGTG 4 cut(s) 105, 195, 201, 362
Cac8I GCNNGC 6 cut(s) 19, 69, 103, 262, 286, 293
CfoI GCGC 1 cut(s) 378
Csp6I GTAC 1 cut(s) 381
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 1 cut(s) 361
CviJI RGCY 8 cut(s) 32, 47, 88, 257, 281, 291, 305, 311
CviKI_1 RGCY 8 cut(s) 32, 47, 88, 257, 281, 291, 305, 311
CviQI GTAC 1 cut(s) 381
DpnI GATC 5 cut(s) 93, 149, 219, 324, 365
DpnII GATC 5 cut(s) 91, 147, 217, 322, 363
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 68
FaeI CATG 1 cut(s) 364
FaiI YATR 2 cut(s) 127, 362
FatI CATG 1 cut(s) 360
FauI CCCGC 1 cut(s) 257
FbaI TGATCA 2 cut(s) 91, 217
Fnu4HI GCNGC 3 cut(s) 258, 282, 289
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 3 cut(s) 258, 282, 289
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 377
GluI GCNGC 3 cut(s) 258, 282, 289
HapII CCGG 5 cut(s) 74, 164, 254, 278, 302
HhaI GCGC 1 cut(s) 378
Hin1II CATG 1 cut(s) 364
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HpaII CCGG 5 cut(s) 74, 164, 254, 278, 302
HphI GGTGA 3 cut(s) 211, 227, 290
Hpy166II GTNNAC 2 cut(s) 339, 370
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 1 cut(s) 367
Hpy8I GTNNAC 2 cut(s) 339, 370
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 2 cut(s) 159, 343
HpyCH4IV ACGT 2 cut(s) 225, 332
HpyCH4V TGCA 5 cut(s) 21, 242, 260, 284, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpySE526I ACGT 2 cut(s) 225, 332
Hsp92II CATG 1 cut(s) 364
HspAI GCGC 1 cut(s) 376
Ksp22I TGATCA 2 cut(s) 91, 217
Kzo9I GATC 5 cut(s) 91, 147, 217, 322, 363
LmnI GCTCC 2 cut(s) 52, 316
Lsp1109I GCAGC 2 cut(s) 244, 268
LweI GCATC 2 cut(s) 124, 304
MaeI CTAG 1 cut(s) 54
MaeII ACGT 2 cut(s) 225, 332
MaeIII GTNAC 1 cut(s) 57
MalI GATC 5 cut(s) 93, 149, 219, 324, 365
MboI GATC 5 cut(s) 91, 147, 217, 322, 363
MboII GAAGA 1 cut(s) 74
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 3 cut(s) 121, 124, 337
MslI CAYNNNNRTG 1 cut(s) 365
MspI CCGG 5 cut(s) 74, 164, 254, 278, 302
MspR9I CCNGG 3 cut(s) 74, 278, 302
MwoI GCNNNNNNNGC 1 cut(s) 107
NciI CCSGG 3 cut(s) 74, 278, 302
NdeII GATC 5 cut(s) 91, 147, 217, 322, 363
NlaIII CATG 1 cut(s) 364
NlaIV GGNNCC 3 cut(s) 48, 312, 324
PkrI GCNGC 3 cut(s) 259, 283, 290
Psp1406I AACGTT 1 cut(s) 332
PspN4I GGNNCC 3 cut(s) 48, 312, 324
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
RseI CAYNNNNRTG 1 cut(s) 365
SatI GCNGC 3 cut(s) 258, 282, 289
Sau3AI GATC 5 cut(s) 91, 147, 217, 322, 363
ScaI AGTACT 1 cut(s) 382
ScrFI CCNGG 3 cut(s) 74, 278, 302
SduI GDGCHC 1 cut(s) 73
SetI ASST 4 cut(s) 59, 90, 228, 335
SfaNI GCATC 2 cut(s) 124, 304
SfcI CTRYAG 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 365
SsiI CCGC 3 cut(s) 213, 264, 288
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 3 cut(s) 72, 276, 300
TaaI ACNGT 2 cut(s) 159, 343
TaiI ACGT 2 cut(s) 228, 335
TatI WGTACW 1 cut(s) 380
TauI GCSGC 1 cut(s) 291
TscAI CASTG 4 cut(s) 112, 195, 201, 362
TseI GCWGC 2 cut(s) 257, 281
TspRI CASTG 4 cut(s) 112, 195, 201, 362
XspI CTAG 1 cut(s) 54
ZrmI AGTACT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.