Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000794

Physical Location & Seq

Genomic Coordinates Forward (+)

7913577 .. 7916040

Gene Structure 2464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCACCCTTGAAATCTCTGGAGGCAGAGCACCCAGTAATCGACTCAGATTTCCAGACCTTTTGCGCCTCCCATGGCATCTTCTCAGTGGAAGATTCCCTCATTCACGACCTCGATGAATTGGCTGGTTCTGCTCAGCAACATCCCACATCTGAAAAGCTAAAGCAGGGAATTACTGAGGTCCACTCTATCATTGATTCTCAGCACCAGCCATGGTTGAATGGTTTGGAGCTTTTAGATGATGCTTTGCATTTCAAACATGTATTATCAACTGGGTGTGAAGGGATTGATTTGTTACTCAGAGGCGGATTGCGTGAGGGGCAGGTAACTGAACTTGTCGGTCCATCTTCCTCTGGTAAAACCCAAGTTTGCCTACTATCTGCTGCAAATGTTGCAACGAAGCACATGGGTACTGTTGTCTACCTGGACACAGGAAACTCATTCTCACCTGAACGAATTGTGCATTTTGTTGGTGATATCTCTGACCATGCCTTTGATCAGGCTGGACAAAGAGTTTTTCAGAAAGTAATGAACAACATTTTATGCCATCCTGTGTTTGACATTTTTACAATGTTCAATCTCTTACACCGGCTAGAGTTCAGTTTGTCATCTCAGATGCGGAAGGGAGAGCAGGTGCGGTTGCTTGTTGTTGATTCGATCTCTTCACTAATCACCCCGATTCTTGGGAACAGTGGTTCACAGGGACGTGCTTTGATGATATCTGCTGGATATCTGTTAAAGAAGTTAGCACACGAGCATAATCTTGCAGTACTGGTGACCAATCACACGGTGGGTGGGGAGAAAGGTATTCCAAAACCAGCTCTTGGACAGACCTGGAAGAGCATTCCACACGTGAGGCTTCTTCTTTCCGGTGATCAGGGAAATAGTACCCAGACTATTTCTGTGCTAAGACACCCATCTATGGCTTCTGGCAAGTCTACAAGGTTTACAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016444 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080134 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1900424 GO:1900426 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

319

Amino Acids

34.6

Weight (kDa)

6.29

Isoelectric Point (pI)

22.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	87 - 153	9.3e-07	RecA N-terminal domain
Rad51	PF08423	89 - 295	4.4e-18	Rad51
AAA_25	PF13481	97 - 263	2.7e-08	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07745 AT1G07745 AT1G07745 AT1G07745 AT1G07745
fragaria_vesca	FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810
malus_domestica	MD11G1043900.v1.1 MD11G1115100.v1.1
prunus_persica	Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1
pyrus_communis	pycom11g09660
rosa_chinensis	RchiOBHm_Chr5g0062661
rosa_laevigata	RLG00000035569
rosa_multiflora	Rmu_sc0006470.1_g000002 Rmu_ssc0000472.1_g000029
rosa_roxburghii	Rroxscaffold_1G00017970
rosa_rugosa	Rorug05G0350700 Rorug05G0350800
rosa_samantha	Rh5AG411600 Rh5BG425600 Rh5CG449700 Rh5DG439600
rosa_wichuraiana	Rw5G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	622
Acc36I	ACCTGC	2 cut(s)	313, 622
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	824
AccI	GTMKAC	2 cut(s)	420, 938
AciI	CCGC	3 cut(s)	306, 619, 637
AcvI	CACGTG	1 cut(s)	853
AdeI	CACNNNGTG	1 cut(s)	790
AfaI	GTAC	3 cut(s)	412, 771, 889
AfiI	CCNNNNNNNGG	3 cut(s)	683, 824, 922
AflIII	ACRYGT	2 cut(s)	259, 850
AgsI	TTSAA	4 cut(s)	13, 220, 256, 577
AjiI	CACGTC	1 cut(s)	707
AjnI	CCWGG	2 cut(s)	423, 833
AloI	GAACNNNNNNTCC	2 cut(s)	679, 711
AluBI	AGCT	3 cut(s)	160, 232, 821
AluI	AGCT	3 cut(s)	160, 232, 821
Alw21I	GWGCWC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	383
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	181, 341
AsuHPI	GGTGA	5 cut(s)	438, 485, 664, 787, 884
AvaII	GGWCC	2 cut(s)	181, 341
BaeI	ACNNNNGTAYC	2 cut(s)	402, 435
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	752
BbrPI	CACGTG	1 cut(s)	853
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	3 cut(s)	352, 555, 925
BciT130I	CCWGG	2 cut(s)	425, 835
BclI	TGATCA	2 cut(s)	496, 874
BfaI	CTAG	1 cut(s)	593
BfuAI	ACCTGC	2 cut(s)	313, 622
BisI	GCNGC	1 cut(s)	384
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	385
BmcAI	AGTACT	1 cut(s)	771
Bme1390I	CCNGG	2 cut(s)	425, 835
Bme18I	GGWCC	2 cut(s)	181, 341
BmgBI	CACGTC	1 cut(s)	707
BmgT120I	GGNCC	2 cut(s)	181, 341
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	425, 835
BmrI	ACTGGG	2 cut(s)	29, 282
BmsI	GCATC	3 cut(s)	87, 232, 606
BmuI	ACTGGG	2 cut(s)	29, 282
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpmI	CTGGAG	1 cut(s)	41
Bpu1102I	GCTNAGC	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	853
BsaJI	CCNNGG	2 cut(s)	73, 212
BsaWI	WCCGGW	1 cut(s)	869
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bsc4I	CCNNNNNNNGG	3 cut(s)	683, 824, 922
Bse118I	RCCGGY	1 cut(s)	588
Bse1I	ACTGG	3 cut(s)	35, 277, 777
BseBI	CCWGG	2 cut(s)	425, 835
BseDI	CCNNGG	2 cut(s)	73, 212
BseGI	GGATG	2 cut(s)	142, 547
BseLI	CCNNNNNNNGG	3 cut(s)	683, 824, 922
BseMII	CTCAG	7 cut(s)	60, 99, 149, 168, 215, 313, 626
BseNI	ACTGG	3 cut(s)	35, 277, 777
BseXI	GCAGC	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	589, 870
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	3 cut(s)	683, 824, 922
BsmFI	GGGAC	1 cut(s)	717
BsmI	GAATGC	1 cut(s)	843
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	496, 657, 874
Bsp1720I	GCTNAGC	1 cut(s)	135
Bsp19I	CCATGG	2 cut(s)	73, 212
BspACI	CCGC	3 cut(s)	306, 619, 637
BspCNI	CTCAG	7 cut(s)	59, 98, 148, 169, 214, 312, 625
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	2 cut(s)	313, 622
BspQI	GCTCTTC	1 cut(s)	833
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	588
BsrI	ACTGG	3 cut(s)	35, 277, 777
BssAI	RCCGGY	1 cut(s)	588
BssECI	CCNNGG	2 cut(s)	73, 212
BssMI	GATC	3 cut(s)	496, 657, 874
BssSI	CACGAG	1 cut(s)	752
BssT1I	CCWWGG	2 cut(s)	73, 212
Bst2BI	CACGAG	1 cut(s)	752
Bst2UI	CCWGG	2 cut(s)	425, 835
Bst4CI	ACNGT	3 cut(s)	415, 692, 790
Bst6I	CTCTTC	2 cut(s)	667, 833
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstBAI	YACGTR	1 cut(s)	853
BstDEI	CTNAG	8 cut(s)	46, 85, 135, 177, 201, 299, 612, 908
BstDSI	CCRYGG	2 cut(s)	73, 212
BstEII	GGTNACC	1 cut(s)	775
BstF5I	GGATG	2 cut(s)	142, 547
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	3 cut(s)	499, 660, 877
BstMBI	GATC	3 cut(s)	496, 657, 874
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 319, 392
BstNI	CCWGG	2 cut(s)	425, 835
BstNSI	RCATGY	1 cut(s)	263
BstPI	GGTNACC	1 cut(s)	775
BstSCI	CCNGG	2 cut(s)	423, 833
BstV1I	GCAGC	1 cut(s)	370
BtgI	CCRYGG	2 cut(s)	73, 212
BtrI	CACGTC	1 cut(s)	707
BtsCI	GGATG	2 cut(s)	142, 547
BtsIMutI	CAGTG	2 cut(s)	93, 697
BveI	ACCTGC	2 cut(s)	313, 622
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	588
Cfr13I	GGNCC	2 cut(s)	181, 341
Csp6I	GTAC	3 cut(s)	411, 770, 888
CviAII	CATG	5 cut(s)	74, 213, 260, 406, 488
CviJI	RGCY	9 cut(s)	125, 160, 211, 232, 503, 592, 821, 859, 926
CviKI_1	RGCY	9 cut(s)	125, 160, 211, 232, 503, 592, 821, 859, 926
CviQI	GTAC	3 cut(s)	411, 770, 888
DdeI	CTNAG	8 cut(s)	46, 85, 135, 177, 201, 299, 612, 908
DpnI	GATC	3 cut(s)	498, 659, 876
DpnII	GATC	3 cut(s)	496, 657, 874
DraIII	CACNNNGTG	1 cut(s)	790
Eam1104I	CTCTTC	2 cut(s)	667, 833
EarI	CTCTTC	2 cut(s)	667, 833
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	73, 212
Eco32I	GATATC	3 cut(s)	478, 720, 731
Eco47I	GGWCC	2 cut(s)	181, 341
Eco72I	CACGTG	1 cut(s)	853
Eco91I	GGTNACC	1 cut(s)	775
EcoO65I	GGTNACC	1 cut(s)	775
EcoRII	CCWGG	2 cut(s)	423, 833
EcoRV	GATATC	3 cut(s)	478, 720, 731
EcoT14I	CCWWGG	2 cut(s)	73, 212
ErhI	CCWWGG	2 cut(s)	73, 212
FaeI	CATG	5 cut(s)	77, 216, 263, 409, 491
FaiI	YATR	9 cut(s)	75, 214, 261, 407, 489, 544, 759, 923, 955
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	5 cut(s)	73, 212, 259, 405, 487
FbaI	TGATCA	2 cut(s)	496, 874
FblI	GTMKAC	2 cut(s)	420, 938
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	2 cut(s)	129, 534
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	41
HapII	CCGG	2 cut(s)	589, 870
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	5 cut(s)	77, 216, 263, 409, 491
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	5 cut(s)	44, 95, 197, 653, 679
HpaII	CCGG	2 cut(s)	589, 870
HphI	GGTGA	5 cut(s)	438, 485, 664, 787, 884
Hpy166II	GTNNAC	5 cut(s)	184, 421, 698, 939, 948
Hpy188I	TCNGA	6 cut(s)	49, 154, 302, 484, 522, 615
Hpy188III	TCNNGA	3 cut(s)	20, 55, 107
Hpy8I	GTNNAC	5 cut(s)	184, 421, 698, 939, 948
HpyAV	CCTTC	2 cut(s)	275, 616
HpyCH4III	ACNGT	3 cut(s)	415, 692, 790
HpyCH4IV	ACGT	2 cut(s)	706, 852
HpyCH4V	TGCA	5 cut(s)	250, 386, 395, 463, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 319, 392
HpyF3I	CTNAG	8 cut(s)	46, 85, 135, 177, 201, 299, 612, 908
HpySE526I	ACGT	2 cut(s)	706, 852
Hsp92II	CATG	5 cut(s)	77, 216, 263, 409, 491
HspAI	GCGC	1 cut(s)	66
Ksp22I	TGATCA	2 cut(s)	496, 874
Kzo9I	GATC	3 cut(s)	496, 657, 874
LguI	GCTCTTC	1 cut(s)	833
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	3 cut(s)	87, 232, 606
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	2 cut(s)	706, 852
MaeIII	GTNAC	3 cut(s)	294, 325, 775
MalI	GATC	3 cut(s)	498, 659, 876
MboI	GATC	3 cut(s)	496, 657, 874
MboII	GAAGA	6 cut(s)	73, 104, 339, 654, 850, 854
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	3 cut(s)	119, 171, 456
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	9 cut(s)	16, 79, 110, 122, 172, 296, 310, 361, 849
MseI	TTAA	1 cut(s)	737
MspI	CCGG	2 cut(s)	589, 870
MspR9I	CCNGG	2 cut(s)	425, 835
Mva1269I	GAATGC	1 cut(s)	843
MvaI	CCWGG	2 cut(s)	425, 835
MwoI	GCNNNNNNNGC	3 cut(s)	131, 319, 392
NcoI	CCATGG	2 cut(s)	73, 212
NdeII	GATC	3 cut(s)	496, 657, 874
NlaIII	CATG	5 cut(s)	77, 216, 263, 409, 491
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	775
NspI	RCATGY	1 cut(s)	263
PaqCI	CACCTGC	1 cut(s)	622
PciI	ACATGT	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	833
PctI	GAATGC	1 cut(s)	843
PfeI	GAWTC	4 cut(s)	95, 197, 653, 679
PflMI	CCANNNNNTGG	1 cut(s)	824
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	1 cut(s)	38
PmaCI	CACGTG	1 cut(s)	853
PmlI	CACGTG	1 cut(s)	853
PpsI	GAGTC	1 cut(s)	38
Ppu21I	YACGTR	1 cut(s)	853
PscI	ACATGT	1 cut(s)	259
Psp6I	CCWGG	2 cut(s)	423, 833
PspCI	CACGTG	1 cut(s)	853
PspEI	GGTNACC	1 cut(s)	775
PspGI	CCWGG	2 cut(s)	423, 833
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	181, 341
RsaI	GTAC	3 cut(s)	412, 771, 889
RsaNI	GTAC	3 cut(s)	411, 770, 888
SapI	GCTCTTC	1 cut(s)	833
SaqAI	TTAA	1 cut(s)	737
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	3 cut(s)	496, 657, 874
Sau96I	GGNCC	2 cut(s)	181, 341
ScaI	AGTACT	1 cut(s)	771
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	425, 835
SduI	GDGCHC	1 cut(s)	33
SfaNI	GCATC	3 cut(s)	87, 232, 606
SinI	GGWCC	2 cut(s)	181, 341
Sse9I	AATT	3 cut(s)	119, 171, 456
SsiI	CCGC	3 cut(s)	306, 619, 637
SspMI	CTAG	1 cut(s)	593
StyD4I	CCNGG	2 cut(s)	423, 833
StyI	CCWWGG	2 cut(s)	73, 212
TaaI	ACNGT	3 cut(s)	415, 692, 790
TaiI	ACGT	2 cut(s)	709, 855
TaqI	TCGA	3 cut(s)	42, 114, 656
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	3 cut(s)	119, 171, 456
TatI	WGTACW	1 cut(s)	769
TfiI	GAWTC	4 cut(s)	95, 197, 653, 679
Tru1I	TTAA	1 cut(s)	737
Tru9I	TTAA	1 cut(s)	737
TscAI	CASTG	2 cut(s)	93, 697
TseFI	GTSAC	1 cut(s)	775
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	775
TspDTI	ATGAA	2 cut(s)	132, 545
TspRI	CASTG	2 cut(s)	93, 697
Van91I	CCANNNNNTGG	1 cut(s)	824
VpaK11BI	GGWCC	2 cut(s)	181, 341
XceI	RCATGY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
XmiI	GTMKAC	2 cut(s)	420, 938
XspI	CTAG	1 cut(s)	593
ZrmI	AGTACT	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.