Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008408

Physical Location & Seq

Genomic Coordinates Reverse (-)

9995966 .. 9999417

Gene Structure 3452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGACGGCGGTATCCGCTGACGTCACCAAGCTAACGAAGCGTGAGAATATTAGTGACATGGATGGTTCTTTGCCCACTGATGGGGCTTTCAACTACGAGAGCGTCCTCAGCAACGACATCCTAAGCGCTCTCGATTTTCCCATGGAAGACATTGATGACAGTGTCGAAGATAACGATTGGGATACAAAGTTCCAAGACATAGAGCCACCACCGAACATTGATCAGTTGCTTGGTTCAGGGATTTTCAGCTATGATGACAAAAAGAAACATACGAACCTCTCCACTCCGTATGAACAAATGTATCAACCGCAATTCCCAAGTGTTACATGTGAAACCATCCGCAGCAAAGGTAGCCTTCGCAATGATGACCATGAAAGCATTGGCTCTTGTGCTGCCCAATTTGAGCCCAAATTTGAAAAGCGCACCCGAAGCAAGCTTTCACGAAGCAGGCGTGCAAACCCTGTTATTTTCAGTACACAGTTCATCCCCAGTACCTCATCCAATTCCTCTGCCACCGAAAACTTGTACCATTGGGATGCTTGTAAATTTGACATAGAATCCTCTCGCACAGAGGATATGTTGAACACTACCAAAAGAAAACAGAAGAAGAAAACGGGAAAGCTCACCACGGATGAACCAGGTGAGAGCCGTGAGGCTAAAAAATGCACGCATTGTCAAGTGACGAAGACCCCTCAGTGGAGAGAAGGGCCACTAGGGCCGAAGACTCTCTGCAATGCGTGTGGAGTTAGGTACAGGTCTGGGCGTCTCTTCCCGGAGTACCGCCCGGCAGCAAGCCCTACATTCGTCGCAGCAGTGCATTCGAACTCGCACAAGAAGGTCATCGAGCTGAGAAGCAAGGGTTGCCAGGAGGCGGTTATGGGGATTTTATCGTCGGCCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

301

Amino Acids

33.63

Weight (kDa)

6.61

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	222 - 255	2e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08000 AT1G08000 AT1G08010 AT1G08010 AT1G08010 AT2G28340
fragaria_vesca	FvH4_3g31980 FvH4_3g31980 FvH4_3g31980
malus_domestica	MD03G1119800.v1.1 MD11G1137400.v1.1
prunus_persica	Prupe.6G102900_v2.0.a1 Prupe.6G102900_v2.0.a1
pyrus_communis	pycom11g11380
rosa_chinensis	RchiOBHm_Chr5g0058731
rosa_laevigata	RLG00000035243
rosa_multiflora	Rmu_sc0000367.1_g000223
rosa_roxburghii	Rroxscaffold_1G00021680
rosa_samantha	Rh5AG383400 Rh5BG395300 Rh5CG419100 Rh5DG410800
rosa_wichuraiana	Rw5G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AciI	CCGC	6 cut(s)	8, 15, 308, 340, 781, 872
AcsI	RAATTY	2 cut(s)	410, 545
AcyI	GRCGYC	2 cut(s)	21, 763
AfaI	GTAC	5 cut(s)	475, 493, 527, 752, 779
AfeI	AGCGCT	1 cut(s)	127
AfiI	CCNNNNNNNGG	4 cut(s)	80, 81, 696, 871
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	91, 416, 583
AjnI	CCWGG	2 cut(s)	637, 864
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	5 cut(s)	31, 249, 436, 622, 847
AluI	AGCT	5 cut(s)	31, 249, 436, 622, 847
Alw26I	GTCTC	1 cut(s)	770
Aor51HI	AGCGCT	1 cut(s)	127
AoxI	GGCC	3 cut(s)	707, 716, 894
ApeKI	GCWGC	4 cut(s)	342, 392, 788, 809
ApoI	RAATTY	2 cut(s)	410, 545
AspLEI	GCGC	2 cut(s)	128, 423
AspS9I	GGNCC	3 cut(s)	707, 716, 895
AsuC2I	CCSGG	2 cut(s)	773, 785
AsuHPI	GGTGA	3 cut(s)	16, 616, 653
AsuII	TTCGAA	1 cut(s)	821
BaeI	ACNNNNGTAYC	3 cut(s)	27, 284, 317
BanII	GRGCYC	1 cut(s)	408
BbsI	GAAGAC	3 cut(s)	153, 692, 728
BbvCI	CCTCAGC	1 cut(s)	107
BbvI	GCAGC	4 cut(s)	354, 379, 800, 821
BccI	CCATC	3 cut(s)	56, 74, 344
BceAI	ACGGC	2 cut(s)	21, 633
BcgI	CGANNNNNNTGC	2 cut(s)	801, 835
BciT130I	CCWGG	2 cut(s)	639, 866
BciVI	GTATCC	2 cut(s)	22, 175
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	2 cut(s)	773, 785
BcoDI	GTCTC	1 cut(s)	770
BfaI	CTAG	1 cut(s)	713
BfoI	RGCGCY	1 cut(s)	129
BfuI	GTATCC	2 cut(s)	22, 175
BglI	GCCNNNNNGGC	1 cut(s)	715
BisI	GCNGC	4 cut(s)	343, 393, 789, 810
BlsI	GCNGC	4 cut(s)	344, 394, 790, 811
Bme1390I	CCNGG	4 cut(s)	639, 773, 785, 866
BmgT120I	GGNCC	3 cut(s)	707, 716, 895
BmrFI	CCNGG	4 cut(s)	639, 773, 785, 866
BmrI	ACTGGG	2 cut(s)	483, 892
BmsI	GCATC	1 cut(s)	526
BmuI	ACTGGG	2 cut(s)	483, 892
BpiI	GAAGAC	3 cut(s)	153, 692, 728
Bpu10I	CCTNAGC	2 cut(s)	107, 122
Bpu14I	TTCGAA	1 cut(s)	821
BpuMI	CCSGG	2 cut(s)	773, 785
BsaHI	GRCGYC	2 cut(s)	21, 763
BsaJI	CCNNGG	2 cut(s)	141, 627
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 81, 696, 871
Bse1I	ACTGG	2 cut(s)	489, 898
Bse3DI	GCAATG	2 cut(s)	367, 739
BseBI	CCWGG	2 cut(s)	639, 866
BseDI	CCNNGG	2 cut(s)	141, 627
BseGI	GGATG	7 cut(s)	67, 117, 336, 483, 497, 541, 637
BseLI	CCNNNNNNNGG	4 cut(s)	80, 81, 696, 871
BseMI	GCAATG	2 cut(s)	367, 739
BseMII	CTCAG	3 cut(s)	121, 707, 839
BseNI	ACTGG	2 cut(s)	489, 898
BseXI	GCAGC	4 cut(s)	354, 379, 800, 821
BshFI	GGCC	3 cut(s)	709, 718, 896
BsiSI	CCGG	2 cut(s)	773, 785
BslI	CCNNNNNNNGG	4 cut(s)	80, 81, 696, 871
BsmAI	GTCTC	1 cut(s)	770
BsmBI	CGTCTC	1 cut(s)	770
BsmI	GAATGC	1 cut(s)	817
BsnI	GGCC	3 cut(s)	709, 718, 896
Bsp119I	TTCGAA	1 cut(s)	821
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	1 cut(s)	220
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	6 cut(s)	8, 15, 308, 340, 781, 872
BspANI	GGCC	3 cut(s)	709, 718, 896
BspCNI	CTCAG	3 cut(s)	120, 706, 840
BspT104I	TTCGAA	1 cut(s)	821
BsrDI	GCAATG	2 cut(s)	367, 739
BsrI	ACTGG	2 cut(s)	489, 898
BssECI	CCNNGG	2 cut(s)	141, 627
BssMI	GATC	1 cut(s)	220
BssNI	GRCGYC	2 cut(s)	21, 763
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	639, 866
Bst4CI	ACNGT	2 cut(s)	161, 480
Bst6I	CTCTTC	1 cut(s)	773
BstACI	GRCGYC	2 cut(s)	21, 763
BstAPI	GCANNNNNTGC	1 cut(s)	861
BstBI	TTCGAA	1 cut(s)	821
BstC8I	GCNNGC	5 cut(s)	434, 449, 453, 668, 793
BstDEI	CTNAG	4 cut(s)	107, 122, 693, 848
BstDSI	CCRYGG	2 cut(s)	141, 627
BstF5I	GGATG	7 cut(s)	67, 117, 336, 483, 497, 541, 637
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	128, 423
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 37, 108, 351, 429, 715, 861
BstNI	CCWGG	2 cut(s)	639, 866
BstNSI	RCATGY	1 cut(s)	330
BstSCI	CCNGG	4 cut(s)	637, 771, 783, 864
BstV1I	GCAGC	4 cut(s)	354, 379, 800, 821
BstV2I	GAAGAC	3 cut(s)	153, 692, 728
BsuI	GTATCC	2 cut(s)	22, 175
BsuRI	GGCC	3 cut(s)	709, 718, 896
BtgI	CCRYGG	2 cut(s)	141, 627
BtsCI	GGATG	7 cut(s)	67, 117, 336, 483, 497, 541, 637
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	4 cut(s)	75, 166, 701, 819
Cac8I	GCNNGC	5 cut(s)	434, 449, 453, 668, 793
CfoI	GCGC	2 cut(s)	128, 423
Cfr13I	GGNCC	3 cut(s)	707, 716, 895
CseI	GACGC	2 cut(s)	91, 752
CsiI	ACCWGGT	1 cut(s)	637
Csp6I	GTAC	5 cut(s)	474, 492, 526, 751, 778
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviAII	CATG	4 cut(s)	58, 142, 327, 371
CviQI	GTAC	5 cut(s)	474, 492, 526, 751, 778
DdeI	CTNAG	4 cut(s)	107, 122, 693, 848
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	773
EarI	CTCTTC	1 cut(s)	773
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	408
Eco47III	AGCGCT	1 cut(s)	127
EcoRII	CCWGG	2 cut(s)	637, 864
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	770
FaeI	CATG	4 cut(s)	61, 145, 330, 374
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FatI	CATG	4 cut(s)	57, 141, 326, 370
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	4 cut(s)	343, 393, 789, 810
FokI	GGATG	7 cut(s)	74, 104, 323, 470, 484, 548, 644
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	4 cut(s)	343, 393, 789, 810
FspBI	CTAG	1 cut(s)	713
GlaI	GCGC	2 cut(s)	127, 422
GluI	GCNGC	4 cut(s)	343, 393, 789, 810
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	3 cut(s)	709, 718, 896
HapII	CCGG	2 cut(s)	773, 785
HgaI	GACGC	2 cut(s)	91, 752
HhaI	GCGC	2 cut(s)	128, 423
Hin1I	GRCGYC	2 cut(s)	21, 763
Hin1II	CATG	4 cut(s)	61, 145, 330, 374
Hin6I	GCGC	2 cut(s)	126, 421
HinP1I	GCGC	2 cut(s)	126, 421
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	2 cut(s)	557, 724
HpaII	CCGG	2 cut(s)	773, 785
HphI	GGTGA	3 cut(s)	16, 616, 653
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188III	TCNNGA	2 cut(s)	131, 441
Hpy8I	GTNNAC	1 cut(s)	476
Hpy99I	CGWCG	2 cut(s)	809, 895
HpyAV	CCTTC	3 cut(s)	365, 698, 829
HpyCH4III	ACNGT	2 cut(s)	161, 480
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	455, 666, 732, 817
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 37, 108, 351, 429, 715, 861
HpyF3I	CTNAG	4 cut(s)	107, 122, 693, 848
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	2 cut(s)	21, 763
Hsp92II	CATG	4 cut(s)	61, 145, 330, 374
HspAI	GCGC	2 cut(s)	126, 421
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	220
Lsp1109I	GCAGC	4 cut(s)	354, 379, 800, 821
LweI	GCATC	1 cut(s)	526
MabI	ACCWGGT	1 cut(s)	637
MaeI	CTAG	1 cut(s)	713
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	4 cut(s)	22, 53, 322, 679
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	7 cut(s)	158, 179, 616, 619, 697, 733, 760
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	5 cut(s)	311, 398, 410, 502, 545
MlyI	GAGTC	1 cut(s)	718
MnlI	CCTC	9 cut(s)	116, 287, 505, 517, 565, 571, 646, 702, 862
MslI	CAYNNNNRTG	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	2 cut(s)	773, 785
MspR9I	CCNGG	4 cut(s)	639, 773, 785, 866
Mva1269I	GAATGC	1 cut(s)	817
MvaI	CCWGG	2 cut(s)	639, 866
MwoI	GCNNNNNNNGC	7 cut(s)	14, 37, 108, 351, 429, 715, 861
NciI	CCSGG	2 cut(s)	773, 785
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	4 cut(s)	61, 145, 330, 374
NmuCI	GTSAC	3 cut(s)	22, 53, 679
NspI	RCATGY	1 cut(s)	330
NspV	TTCGAA	1 cut(s)	821
PciI	ACATGT	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 448
PctI	GAATGC	1 cut(s)	817
PfeI	GAWTC	1 cut(s)	557
PflFI	GACNNNGTC	1 cut(s)	161
PfoI	TCCNGGA	1 cut(s)	771
PkrI	GCNGC	4 cut(s)	344, 394, 790, 811
PleI	GAGTC	1 cut(s)	718
PpsI	GAGTC	1 cut(s)	718
PscI	ACATGT	1 cut(s)	326
Psp6I	CCWGG	2 cut(s)	637, 864
PspGI	CCWGG	2 cut(s)	637, 864
PspPI	GGNCC	3 cut(s)	707, 716, 895
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	5 cut(s)	475, 493, 527, 752, 779
RsaNI	GTAC	5 cut(s)	474, 492, 526, 751, 778
RseI	CAYNNNNRTG	1 cut(s)	534
SatI	GCNGC	4 cut(s)	343, 393, 789, 810
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	3 cut(s)	707, 716, 895
SchI	GAGTC	1 cut(s)	718
ScrFI	CCNGG	4 cut(s)	639, 773, 785, 866
SduI	GDGCHC	1 cut(s)	408
SexAI	ACCWGGT	1 cut(s)	637
SfaNI	GCATC	1 cut(s)	526
SfiI	GGCCNNNNNGGCC	1 cut(s)	715
SfuI	TTCGAA	1 cut(s)	821
SmiMI	CAYNNNNRTG	1 cut(s)	534
Sse9I	AATT	5 cut(s)	311, 398, 410, 502, 545
SsiI	CCGC	6 cut(s)	8, 15, 308, 340, 781, 872
SspI	AATATT	1 cut(s)	49
SspMI	CTAG	1 cut(s)	713
StyD4I	CCNGG	4 cut(s)	637, 771, 783, 864
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	161, 480
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	4 cut(s)	132, 165, 821, 843
TasI	AATT	5 cut(s)	311, 398, 410, 502, 545
TatI	WGTACW	1 cut(s)	473
TfiI	GAWTC	1 cut(s)	557
TscAI	CASTG	4 cut(s)	82, 166, 701, 819
TseFI	GTSAC	3 cut(s)	22, 53, 679
TseI	GCWGC	4 cut(s)	342, 392, 788, 809
Tsp45I	GTSAC	3 cut(s)	22, 53, 679
TspDTI	ATGAA	4 cut(s)	306, 387, 472, 648
TspGWI	ACGGA	2 cut(s)	276, 644
TspRI	CASTG	4 cut(s)	82, 166, 701, 819
Tth111I	GACNNNGTC	1 cut(s)	161
XapI	RAATTY	2 cut(s)	410, 545
XceI	RCATGY	1 cut(s)	330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XspI	CTAG	1 cut(s)	713
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.