pycom11g11410

membrane protein At1g06890-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0013328
Physical Location & Seq
Reverse (-)
10045422 .. 10047390
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1023 bp
ATGGCTGGATTCCAATTGGGCGTTATTGGTGCACTGTTTCTTTCAGTGGCATCGTCTGTCTCTATTGTTATATGCAACAAAGCTTTGATGAGCAATCTCGGCTTCCCCTTTGCAACAACGCTTACCAGTTGGCATCTGATGGTAACATTTGGCACCCTTCATGCGGCACAACGTCTTAAATTTTTCGAGAGTAAGTCAATTGACATGAAGACTGTCATGCTCTTTGGCATTCTTAATGGTGTTTCCATTGGATTGCTAAACTTGAGCCTCGGATTCAATTCCATTGGATTCTACCAGATGACCAAGCTTGCAATTATACCCTTTACTGTGTTATTGGAAACTCTTTTCCTTAAAAAGCAATTCAGCCAGAAGATCAAGTTTTCTCTCTTCTTATTAGTTGTTGGAGTTGGAATTGCCTCAGTGACAGACCTCCAGCTCAATTTTGTTGGAACGATTCTCTCTCTTCTAGCCATCGTAACAACCTGTGTTGGACAAATTCTAACAAACACAATACAGAAAAGGCTCAATGTCTCCTCTACTCAGCTTCTCTACCAATCAGCCCCTTTTCAAGCAGCTATTCTTTTTGTATCAGGCCCTGTGGTGGACCAGTTCCTTACCAAGCAAAATGTTTTTGCCCATAAATACTCTTCTATAGTATTGGTATTCATCATACTTTCATGCCTGATAGCTGTGTCTGTGAACTTCAGCACCTTCTTAGTAATTGGCAAGACATCCCCAGTTACATATCAAGTGCTAGGTCATCTCAAGACATGCCTTGTTCTAGGGTTTGGCTACACATTACTCCATGACCCCTTCACTGAGAGGAATATAATTGGAATTCTGGTTGCCATTTTTGGGATGGGATTGTATTCATATTTTTGTGCCCAGGAAAGCAAGAAGAAACAAGCTGGTGGTGACCTCTCATTGGGATCTCCGACTAAAGGAAAGGATGGCACTCCACTTTTGAGCCAAGATAATGATACCCATGAGGTTAAGAAATCAACTAAGAACTCTCTTGTTTGA

Protein Analysis

341

Amino Acids

36.88

Weight (kDa)

9.52

Isoelectric Point (pI)

29.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 18 - 291 2e-19 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28315 AT2G28315
fragaria_vesca FvH4_3g31910 FvH4_3g31910 FvH4_3g31910
malus_domestica MD03G1120000.v1.1 MD11G1138100.v1.1
prunus_persica Prupe.6G103500_v2.0.a1
pyrus_communis pycom11g11410
rosa_chinensis RchiOBHm_Chr5g0058681
rosa_laevigata RLG00000035241
rosa_roxburghii Rroxscaffold_1G00021730
rosa_rugosa Rorug05G0317400
rosa_samantha Rh5AG383100 Rh5BG395000 Rh5CG418800 Rh5DG410300
rosa_wichuraiana Rw5G036100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AciI CCGC 1 cut(s) 164
AclWI GGATC 1 cut(s) 937
AcsI RAATTY 3 cut(s) 179, 495, 837
AcuI CTGAAG 1 cut(s) 688
AfiI CCNNNNNNNGG 5 cut(s) 163, 601, 855, 925, 941
AgsI TTSAA 2 cut(s) 277, 569
AjnI CCWGG 1 cut(s) 885
AluBI AGCT 7 cut(s) 83, 307, 436, 544, 575, 689, 908
AluI AGCT 7 cut(s) 83, 307, 436, 544, 575, 689, 908
Alw21I GWGCWC 1 cut(s) 34
Alw26I GTCTC 2 cut(s) 64, 535
Alw44I GTGCAC 1 cut(s) 30
AlwI GGATC 1 cut(s) 937
AlwNI CAGNNNCTG 1 cut(s) 596
AoxI GGCC 1 cut(s) 592
ApaLI GTGCAC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 572
ApoI RAATTY 3 cut(s) 179, 495, 837
AspS9I GGNCC 2 cut(s) 593, 604
AsuHPI GGTGA 1 cut(s) 926
AvaII GGWCC 1 cut(s) 604
BaeGI GKGCMC 2 cut(s) 34, 886
BanI GGYRCC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 584
BccI CCATC 4 cut(s) 133, 479, 853, 944
BciT130I CCWGG 1 cut(s) 887
BcoDI GTCTC 2 cut(s) 64, 535
BfaI CTAG 3 cut(s) 467, 755, 782
BfmI CTRYAG 1 cut(s) 651
BisI GCNGC 2 cut(s) 165, 573
BlsI GCNGC 2 cut(s) 166, 574
Bme1390I CCNGG 1 cut(s) 887
Bme18I GGWCC 1 cut(s) 604
BmgT120I GGNCC 2 cut(s) 593, 604
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 887
BmrI ACTGGG 1 cut(s) 731
BmsI GCATC 2 cut(s) 59, 142
BmuI ACTGGG 1 cut(s) 731
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 416
BpuEI CTTGAG 2 cut(s) 283, 749
BsaJI CCNNGG 2 cut(s) 268, 885
Bsc4I CCNNNNNNNGG 5 cut(s) 163, 601, 855, 925, 941
Bse1I ACTGG 3 cut(s) 126, 607, 737
BseBI CCWGG 1 cut(s) 887
BseDI CCNNGG 2 cut(s) 268, 885
BseGI GGATG 3 cut(s) 731, 864, 955
BseLI CCNNNNNNNGG 5 cut(s) 163, 601, 855, 925, 941
BseMII CTCAG 3 cut(s) 432, 554, 810
BseNI ACTGG 3 cut(s) 126, 607, 737
BseRI GAGGAG 1 cut(s) 523
BseSI GKGCMC 2 cut(s) 34, 886
BseXI GCAGC 1 cut(s) 584
BshFI GGCC 1 cut(s) 594
BshNI GGYRCC 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 34
BslI CCNNNNNNNGG 5 cut(s) 163, 601, 855, 925, 941
BsmAI GTCTC 2 cut(s) 64, 535
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 1 cut(s) 594
Bsp1286I GDGCHC 2 cut(s) 34, 886
Bsp143I GATC 2 cut(s) 372, 929
BspACI CCGC 1 cut(s) 164
BspANI GGCC 1 cut(s) 594
BspCNI CTCAG 3 cut(s) 431, 553, 811
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 1 cut(s) 937
BspT107I GGYRCC 1 cut(s) 152
BsrI ACTGG 3 cut(s) 126, 607, 737
BssECI CCNNGG 2 cut(s) 268, 885
BssMI GATC 2 cut(s) 372, 929
Bst2UI CCWGG 1 cut(s) 887
Bst4CI ACNGT 3 cut(s) 36, 214, 328
Bst6I CTCTTC 3 cut(s) 392, 468, 652
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 5 cut(s) 418, 540, 715, 819, 1005
BstEII GGTNACC 1 cut(s) 914
BstF5I GGATG 3 cut(s) 731, 864, 955
BstKTI GATC 2 cut(s) 375, 932
BstMAI GTCTC 2 cut(s) 64, 535
BstMBI GATC 2 cut(s) 372, 929
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstNI CCWGG 1 cut(s) 887
BstNSI RCATGY 1 cut(s) 774
BstPI GGTNACC 1 cut(s) 914
BstSCI CCNGG 1 cut(s) 885
BstSFI CTRYAG 1 cut(s) 651
BstSLI GKGCMC 2 cut(s) 34, 886
BstV1I GCAGC 1 cut(s) 584
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 929
BstYI RGATCY 1 cut(s) 929
BsuRI GGCC 1 cut(s) 594
BtsCI GGATG 3 cut(s) 731, 864, 955
BtsIMutI CAGTG 4 cut(s) 32, 51, 426, 816
Cac8I GCNNGC 1 cut(s) 309
CaiI CAGNNNCTG 1 cut(s) 596
Cfr13I GGNCC 2 cut(s) 593, 604
CviAII CATG 7 cut(s) 161, 205, 217, 678, 771, 806, 986
DdeI CTNAG 5 cut(s) 418, 540, 715, 819, 1005
DpnI GATC 2 cut(s) 374, 931
DpnII GATC 2 cut(s) 372, 929
Eam1104I CTCTTC 3 cut(s) 392, 468, 652
EarI CTCTTC 3 cut(s) 392, 468, 652
Eco47I GGWCC 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 688
Eco91I GGTNACC 1 cut(s) 914
EcoO109I RGGNCCY 1 cut(s) 593
EcoO65I GGTNACC 1 cut(s) 914
EcoRI GAATTC 1 cut(s) 837
EcoRII CCWGG 1 cut(s) 885
FaeI CATG 7 cut(s) 164, 208, 220, 681, 774, 809, 989
FatI CATG 7 cut(s) 160, 204, 216, 677, 770, 805, 985
Fnu4HI GCNGC 2 cut(s) 165, 573
FokI GGATG 3 cut(s) 718, 871, 962
Fsp4HI GCNGC 2 cut(s) 165, 573
FspBI CTAG 3 cut(s) 467, 755, 782
GluI GCNGC 2 cut(s) 165, 573
GsuI CTGGAG 1 cut(s) 416
HaeIII GGCC 1 cut(s) 594
Hin1II CATG 7 cut(s) 164, 208, 220, 681, 774, 809, 989
HindIII AAGCTT 2 cut(s) 81, 305
HinfI GANTC 4 cut(s) 9, 273, 288, 454
HphI GGTGA 1 cut(s) 926
Hpy166II GTNNAC 3 cut(s) 32, 604, 700
Hpy188I TCNGA 3 cut(s) 138, 272, 936
Hpy188III TCNNGA 2 cut(s) 187, 766
Hpy8I GTNNAC 3 cut(s) 32, 604, 700
HpyAV CCTTC 3 cut(s) 167, 721, 823
HpyCH4III ACNGT 3 cut(s) 36, 214, 328
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 4 cut(s) 32, 75, 113, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpyF3I CTNAG 5 cut(s) 418, 540, 715, 819, 1005
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 7 cut(s) 164, 208, 220, 681, 774, 809, 989
Kzo9I GATC 2 cut(s) 372, 929
Lsp1109I GCAGC 1 cut(s) 584
LweI GCATC 2 cut(s) 59, 142
MaeI CTAG 3 cut(s) 467, 755, 782
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 5 cut(s) 142, 421, 475, 739, 914
MalI GATC 2 cut(s) 374, 931
MboI GATC 2 cut(s) 372, 929
MboII GAAGA 6 cut(s) 220, 379, 382, 455, 639, 910
MfeI CAATTG 2 cut(s) 14, 198
MflI RGATCY 1 cut(s) 929
MhlI GDGCHC 2 cut(s) 34, 886
MmeI TCCRAC 5 cut(s) 382, 388, 427, 469, 959
MnlI CCTC 7 cut(s) 278, 427, 440, 544, 816, 929, 982
MseI TTAA 4 cut(s) 177, 234, 351, 993
MspR9I CCNGG 1 cut(s) 887
MunI CAATTG 2 cut(s) 14, 198
Mva1269I GAATGC 1 cut(s) 228
MvaI CCWGG 1 cut(s) 887
MwoI GCNNNNNNNGC 1 cut(s) 99
NdeII GATC 2 cut(s) 372, 929
NlaIII CATG 7 cut(s) 164, 208, 220, 681, 774, 809, 989
NlaIV GGNNCC 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 421, 914
NspI RCATGY 1 cut(s) 774
PctI GAATGC 1 cut(s) 228
PfeI GAWTC 4 cut(s) 9, 273, 288, 454
PkrI GCNGC 2 cut(s) 166, 574
Psp6I CCWGG 1 cut(s) 885
PspEI GGTNACC 1 cut(s) 914
PspGI CCWGG 1 cut(s) 885
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 593, 604
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 1 cut(s) 929
SaqAI TTAA 4 cut(s) 177, 234, 351, 993
SatI GCNGC 2 cut(s) 165, 573
Sau3AI GATC 2 cut(s) 372, 929
Sau96I GGNCC 2 cut(s) 593, 604
ScrFI CCNGG 1 cut(s) 887
SduI GDGCHC 2 cut(s) 34, 886
SfaNI GCATC 2 cut(s) 59, 142
SfcI CTRYAG 1 cut(s) 651
SinI GGWCC 1 cut(s) 604
SmlI CTYRAG 2 cut(s) 262, 764
SmoI CTYRAG 2 cut(s) 262, 764
SsiI CCGC 1 cut(s) 164
SspMI CTAG 3 cut(s) 467, 755, 782
StyD4I CCNGG 1 cut(s) 885
TaaI ACNGT 3 cut(s) 36, 214, 328
TaiI ACGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 186
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 4 cut(s) 9, 273, 288, 454
Tru1I TTAA 4 cut(s) 177, 234, 351, 993
Tru9I TTAA 4 cut(s) 177, 234, 351, 993
TscAI CASTG 4 cut(s) 39, 51, 426, 823
TseFI GTSAC 2 cut(s) 421, 914
TseI GCWGC 1 cut(s) 572
Tsp45I GTSAC 2 cut(s) 421, 914
TspDTI ATGAA 5 cut(s) 149, 221, 655, 666, 861
TspRI CASTG 4 cut(s) 39, 51, 426, 823
VneI GTGCAC 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 604
XapI RAATTY 3 cut(s) 179, 495, 837
XceI RCATGY 1 cut(s) 774
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XspI CTAG 3 cut(s) 467, 755, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.