Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001921

Physical Location & Seq

Genomic Coordinates Reverse (-)

10322128 .. 10323612

Gene Structure 1485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCAAATGGTGGTTGCTTCCTTCGAATCAGTTGCCGGTCTAAGTTCTGCTACACCTTACATATCCATGGCTCTAAACACAGTCGCAAGACACTTCAGGTGTCTTACAAATTCCATCAAGGACCAGCTCAAGCACATAAGGAAGGCTTTGGGAGAGGAAAATATGTCATCCGCTGTAACTGCTGCTGTTACTGCTGGATGCAGTAGTAAAGGTGAAAAAAATTTGGCCAAGCTAAAGTACATGGGCCTAGGTTTTCAAAAACATACGTCGTCTGGCGGTGGGTCTCTTGTGGGTTTCTCTGAACCCCAACAACACGTCTGGAGACCCCAGAGAGGCCTACCTGAACGTTCAGTAGCCATTCTACGAGCTTGGCTCTTTGAGCATTTTCTTCACCCGTATCCCACGGACACAGATAAGCACATGTTAGCTACTCAAACGGGTCTATCTCGAAATCAGGTGTCAAACTGGTTCATAAACGCCCGAGTGCGCGTTTGGAAGCCCATGGTTGAAGAAATACATATGCTCGAAACTAGAGGAGGCTCCCACGAAGCTGGCCAAGATCCTATCAATAAGGATGGAAATTCTGCAAATGAAGGCACCAGCAGCAGGCCAAACAATGATCATCAACTAAGCATGAATATGATGCCCGATAGGCAATTAGAGTGCTCAGGAGATGCAGAGCAGCAAAATCAGGAGATGAAGAGGTCTAGATTGGAGTGCCAAGTTCCATCAAGCATGGACGGAGGATTGATGGGTTTTGTCCCGTACCAGCGAGGAGGGTTTGAGGCTGGGGGACTTGGAGCCGTGTCCCTCACATTGGGTCTCAGACATGGGGTAGAAAGTGCCCAGCAGCAGCAACAATTGCAGCAACAAGAGGATCAGCTGCGGCGGCAACTTGGAGGTCAAGTGGTACGTGATTATGTGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010016 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010223 GO:0010228 GO:0010229 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080006 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

310

Amino Acids

34.11

Weight (kDa)

8.34

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	1 - 39	2e-12	Associated with HOX
Homeobox_KN	PF05920	124 - 163	6.2e-20	Homeobox KN domain
Homeodomain	PF00046	131 - 163	7e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27990 AT2G27990
fragaria_vesca	FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640
malus_domestica	MD03G1122400.v1.1 MD11G1140600.v1.1
prunus_persica	Prupe.6G105100_v2.0.a1 Prupe.6G105100_v2.0.a1 Prupe.6G105100_v2.0.a1 Prupe.6G105100_v2.0.a1 Prupe.6G105100_v2.0.a1 Prupe.6G105100_v2.0.a1
pyrus_communis	pycom11g11630
rosa_chinensis	RchiOBHm_Chr5g0058351
rosa_laevigata	RLG00000035214
rosa_roxburghii	Rroxscaffold_1G00022230
rosa_rugosa	Rorug05G0313100 Rorug05G0313200 Rorug05G0313300
rosa_samantha	Rh5AG380800 Rh5BG392300 Rh5CG416300 Rh5DG407200
rosa_wichuraiana	Rw5G035880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	596
AccII	CGCG	1 cut(s)	489
AciI	CCGC	4 cut(s)	171, 276, 886, 889
AclI	AACGTT	1 cut(s)	346
AclWI	GGATC	2 cut(s)	554, 885
AcoI	YGGCCR	2 cut(s)	225, 553
AcsI	RAATTY	3 cut(s)	109, 220, 580
AcuI	CTGAAG	1 cut(s)	79
AfaI	GTAC	3 cut(s)	239, 767, 912
AfiI	CCNNNNNNNGG	3 cut(s)	332, 606, 817
AflIII	ACRYGT	2 cut(s)	313, 420
AgsI	TTSAA	2 cut(s)	257, 509
AjiI	CACGTC	1 cut(s)	316
AluBI	AGCT	6 cut(s)	127, 232, 368, 428, 551, 883
AluI	AGCT	6 cut(s)	127, 232, 368, 428, 551, 883
Alw21I	GWGCWC	1 cut(s)	668
Alw26I	GTCTC	3 cut(s)	288, 316, 827
AlwI	GGATC	2 cut(s)	554, 885
Ama87I	CYCGRG	1 cut(s)	480
AoxI	GGCC	5 cut(s)	225, 244, 334, 553, 608
ApeKI	GCWGC	7 cut(s)	182, 603, 682, 850, 853, 865, 883
ApoI	RAATTY	3 cut(s)	109, 220, 580
AspA2I	CCTAGG	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	2 cut(s)	121, 244
AsuHPI	GGTGA	2 cut(s)	224, 383
AsuII	TTCGAA	1 cut(s)	24
AvaI	CYCGRG	1 cut(s)	480
AvaII	GGWCC	1 cut(s)	121
AvrII	CCTAGG	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	847
BalI	TGGCCA	2 cut(s)	227, 555
BanI	GGYRCC	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	668
BbvI	GCAGC	7 cut(s)	169, 615, 694, 862, 865, 870, 877
BccI	CCATC	4 cut(s)	122, 569, 736, 745
BceAI	ACGGC	1 cut(s)	788
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciVI	GTATCC	1 cut(s)	408
BclI	TGATCA	1 cut(s)	619
BcoDI	GTCTC	3 cut(s)	288, 316, 827
BfaI	CTAG	3 cut(s)	248, 531, 708
BfuI	GTATCC	1 cut(s)	408
BglI	GCCNNNNNGGC	1 cut(s)	652
BisI	GCNGC	9 cut(s)	183, 604, 683, 851, 854, 866, 884, 887, 890
BlnI	CCTAGG	1 cut(s)	247
BlsI	GCNGC	9 cut(s)	184, 605, 684, 852, 855, 867, 885, 888, 891
Bme18I	GGWCC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	480
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	2 cut(s)	121, 244
BmiI	GGNNCC	3 cut(s)	541, 598, 802
BmsI	GCATC	3 cut(s)	188, 633, 664
BplI	GAGNNNNNCTC	2 cut(s)	357, 389
BpmI	CTGGAG	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	667
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	914
BsaI	GGTCTC	3 cut(s)	288, 316, 827
BsaJI	CCNNGG	4 cut(s)	66, 247, 402, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	891, 921
Bsc4I	CCNNNNNNNGG	3 cut(s)	332, 606, 817
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	470
BseDI	CCNNGG	4 cut(s)	66, 247, 402, 501
BseGI	GGATG	3 cut(s)	167, 203, 580
BseLI	CCNNNNNNNGG	3 cut(s)	332, 606, 817
BseMII	CTCAG	2 cut(s)	681, 838
BseNI	ACTGG	1 cut(s)	470
BseRI	GAGGAG	2 cut(s)	549, 789
BseSI	GKGCMC	1 cut(s)	847
BseXI	GCAGC	7 cut(s)	169, 615, 694, 862, 865, 870, 877
BseYI	CCCAGC	2 cut(s)	788, 846
Bsh1236I	CGCG	1 cut(s)	489
BshFI	GGCC	5 cut(s)	227, 246, 336, 555, 610
BshNI	GGYRCC	1 cut(s)	596
BsiHKAI	GWGCWC	1 cut(s)	668
BsiHKCI	CYCGRG	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	3 cut(s)	746, 793, 807
BslI	CCNNNNNNNGG	3 cut(s)	332, 606, 817
BsmAI	GTCTC	3 cut(s)	288, 316, 827
BsmFI	GGGAC	3 cut(s)	746, 793, 807
BsnI	GGCC	5 cut(s)	227, 246, 336, 555, 610
Bso31I	GGTCTC	3 cut(s)	288, 316, 827
BsoBI	CYCGRG	1 cut(s)	480
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	668, 847
Bsp143I	GATC	3 cut(s)	559, 619, 877
Bsp19I	CCATGG	2 cut(s)	66, 501
BspACI	CCGC	4 cut(s)	171, 276, 886, 889
BspANI	GGCC	5 cut(s)	227, 246, 336, 555, 610
BspCNI	CTCAG	2 cut(s)	680, 837
BspFNI	CGCG	1 cut(s)	489
BspLI	GGNNCC	3 cut(s)	541, 598, 802
BspPI	GGATC	2 cut(s)	554, 885
BspT104I	TTCGAA	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	596
BspTNI	GGTCTC	3 cut(s)	288, 316, 827
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	470
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	4 cut(s)	66, 247, 402, 501
BssMI	GATC	3 cut(s)	559, 619, 877
BssT1I	CCWWGG	3 cut(s)	66, 247, 501
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	695
BstAPI	GCANNNNNTGC	1 cut(s)	862
BstBAI	YACGTR	1 cut(s)	914
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	553, 608
BstDEI	CTNAG	4 cut(s)	41, 629, 667, 824
BstDSI	CCRYGG	3 cut(s)	66, 402, 501
BstF5I	GGATG	3 cut(s)	167, 203, 580
BstFNI	CGCG	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	3 cut(s)	562, 622, 880
BstMAI	GTCTC	3 cut(s)	288, 316, 827
BstMBI	GATC	3 cut(s)	559, 619, 877
BstMWI	GCNNNNNNNGC	7 cut(s)	179, 191, 379, 603, 652, 862, 889
BstNSI	RCATGY	1 cut(s)	424
BstSLI	GKGCMC	1 cut(s)	847
BstUI	CGCG	1 cut(s)	489
BstV1I	GCAGC	7 cut(s)	169, 615, 694, 862, 865, 870, 877
BstX2I	RGATCY	1 cut(s)	559
BstXI	CCANNNNNNTGG	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	559
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	5 cut(s)	227, 246, 336, 555, 610
BtgI	CCRYGG	3 cut(s)	66, 402, 501
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	3 cut(s)	167, 203, 580
Cac8I	GCNNGC	2 cut(s)	553, 608
CfoI	GCGC	1 cut(s)	489
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	121, 244
Csp6I	GTAC	3 cut(s)	238, 766, 911
CviAII	CATG	7 cut(s)	67, 241, 421, 502, 634, 736, 830
CviQI	GTAC	3 cut(s)	238, 766, 911
DdeI	CTNAG	4 cut(s)	41, 629, 667, 824
DpnI	GATC	3 cut(s)	561, 621, 879
DpnII	GATC	3 cut(s)	559, 619, 877
EaeI	YGGCCR	2 cut(s)	225, 553
Eam1104I	CTCTTC	1 cut(s)	695
EarI	CTCTTC	1 cut(s)	695
Eco130I	CCWWGG	3 cut(s)	66, 247, 501
Eco147I	AGGCCT	1 cut(s)	336
Eco31I	GGTCTC	3 cut(s)	288, 316, 827
Eco47I	GGWCC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	480
EcoT14I	CCWWGG	3 cut(s)	66, 247, 501
ErhI	CCWWGG	3 cut(s)	66, 247, 501
FaeI	CATG	7 cut(s)	70, 244, 424, 505, 637, 739, 833
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FaqI	GGGAC	3 cut(s)	746, 793, 807
FatI	CATG	7 cut(s)	66, 240, 420, 501, 633, 735, 829
FauNDI	CATATG	1 cut(s)	519
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	9 cut(s)	183, 604, 683, 851, 854, 866, 884, 887, 890
FokI	GGATG	3 cut(s)	154, 210, 587
Fsp4HI	GCNGC	9 cut(s)	183, 604, 683, 851, 854, 866, 884, 887, 890
FspBI	CTAG	3 cut(s)	248, 531, 708
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	9 cut(s)	183, 604, 683, 851, 854, 866, 884, 887, 890
GsaI	CCCAGC	2 cut(s)	792, 850
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	5 cut(s)	227, 246, 336, 555, 610
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	489
Hin1II	CATG	7 cut(s)	70, 244, 424, 505, 637, 739, 833
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	2 cut(s)	224, 383
Hpy188I	TCNGA	2 cut(s)	301, 827
Hpy188III	TCNNGA	5 cut(s)	319, 447, 669, 692, 708
Hpy99I	CGWCG	1 cut(s)	271
HpyAV	CCTTC	3 cut(s)	31, 136, 587
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	4 cut(s)	266, 315, 346, 913
HpyCH4V	TGCA	5 cut(s)	4, 201, 587, 677, 865
HpyF10VI	GCNNNNNNNGC	7 cut(s)	179, 191, 379, 603, 652, 862, 889
HpyF3I	CTNAG	4 cut(s)	41, 629, 667, 824
HpySE526I	ACGT	4 cut(s)	266, 315, 346, 913
Hsp92II	CATG	7 cut(s)	70, 244, 424, 505, 637, 739, 833
HspAI	GCGC	1 cut(s)	487
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	559, 619, 877
LmnI	GCTCC	2 cut(s)	545, 800
Lsp1109I	GCAGC	7 cut(s)	169, 615, 694, 862, 865, 870, 877
LweI	GCATC	3 cut(s)	188, 633, 664
MaeI	CTAG	3 cut(s)	248, 531, 708
MaeII	ACGT	4 cut(s)	266, 315, 346, 913
MaeIII	GTNAC	2 cut(s)	175, 187
MalI	GATC	3 cut(s)	561, 621, 879
MboI	GATC	3 cut(s)	559, 619, 877
MboII	GAAGA	3 cut(s)	380, 521, 712
MfeI	CAATTG	1 cut(s)	860
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	2 cut(s)	668, 847
MlsI	TGGCCA	2 cut(s)	227, 555
MluCI	AATT	5 cut(s)	109, 220, 580, 656, 860
MluNI	TGGCCA	2 cut(s)	227, 555
Mox20I	TGGCCA	2 cut(s)	227, 555
MscI	TGGCCA	2 cut(s)	227, 555
MslI	CAYNNNNRTG	2 cut(s)	65, 638
Msp20I	TGGCCA	2 cut(s)	227, 555
MspA1I	CMGCKG	2 cut(s)	173, 883
MspI	CCGG	1 cut(s)	36
MunI	CAATTG	1 cut(s)	860
MvnI	CGCG	1 cut(s)	489
MwoI	GCNNNNNNNGC	7 cut(s)	179, 191, 379, 603, 652, 862, 889
NcoI	CCATGG	2 cut(s)	66, 501
NdeI	CATATG	1 cut(s)	519
NdeII	GATC	3 cut(s)	559, 619, 877
NlaIII	CATG	7 cut(s)	70, 244, 424, 505, 637, 739, 833
NlaIV	GGNNCC	3 cut(s)	541, 598, 802
NspI	RCATGY	1 cut(s)	424
NspV	TTCGAA	1 cut(s)	24
PceI	AGGCCT	1 cut(s)	336
PciI	ACATGT	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	9 cut(s)	184, 605, 684, 852, 855, 867, 885, 888, 891
Ppu21I	YACGTR	1 cut(s)	914
PscI	ACATGT	1 cut(s)	420
Psp1406I	AACGTT	1 cut(s)	346
PspFI	CCCAGC	2 cut(s)	788, 846
PspN4I	GGNNCC	3 cut(s)	541, 598, 802
PspPI	GGNCC	2 cut(s)	121, 244
PsuI	RGATCY	1 cut(s)	559
PvuII	CAGCTG	1 cut(s)	883
RsaI	GTAC	3 cut(s)	239, 767, 912
RsaNI	GTAC	3 cut(s)	238, 766, 911
RseI	CAYNNNNRTG	2 cut(s)	65, 638
SatI	GCNGC	9 cut(s)	183, 604, 683, 851, 854, 866, 884, 887, 890
Sau3AI	GATC	3 cut(s)	559, 619, 877
Sau96I	GGNCC	2 cut(s)	121, 244
SduI	GDGCHC	2 cut(s)	668, 847
SfaNI	GCATC	3 cut(s)	188, 633, 664
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	1 cut(s)	121
SmiMI	CAYNNNNRTG	2 cut(s)	65, 638
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	5 cut(s)	109, 220, 580, 656, 860
SseBI	AGGCCT	1 cut(s)	336
SsiI	CCGC	4 cut(s)	171, 276, 886, 889
SspMI	CTAG	3 cut(s)	248, 531, 708
StuI	AGGCCT	1 cut(s)	336
StyI	CCWWGG	3 cut(s)	66, 247, 501
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	4 cut(s)	269, 318, 349, 916
TaqI	TCGA	3 cut(s)	24, 448, 525
TasI	AATT	5 cut(s)	109, 220, 580, 656, 860
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	2 cut(s)	889, 892
TfiI	GAWTC	1 cut(s)	26
TseI	GCWGC	7 cut(s)	182, 603, 682, 850, 853, 865, 883
TspDTI	ATGAA	4 cut(s)	460, 606, 650, 713
TspGWI	ACGGA	2 cut(s)	419, 756
VpaK11BI	GGWCC	1 cut(s)	121
XapI	RAATTY	3 cut(s)	109, 220, 580
XbaI	TCTAGA	1 cut(s)	707
XceI	RCATGY	1 cut(s)	424
XmaJI	CCTAGG	1 cut(s)	247
XspI	CTAG	3 cut(s)	248, 531, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.