pycom11g11930

Protein-lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003130
Physical Location & Seq
Reverse (-)
10795916 .. 10797564
1649 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 612 bp
ATGATCGATCATGTAAGAGCTGTTGAACCACCATTTGACTACATCATTGGAACTGATGTTGTCTATAAAGAAAATCTGTTGGAACCATTGTTGCAGACAATACATGCATTATCAGGGCCGAAAACTACAATTTTGATGGGGTATGAGATTCGATCTACAAGTGTCCATGAACAAATGCTTCAAATGTGGAAAAGAAACTTCGAGGTGAAAACTGTTCCAAATTCAAAGATGGACAGTACCTACCAACATCCAGATATTCAACTTTACATTATGACATTAAAGCCTCCGGAGGGTTACGCAGAAAACGCAGCTGAGGTGATTGATCAGAATGAGGATGAAGTGGAGGGTGGTGCAGAAGAAGTGGATAAGGTGATTGATCAGAAAGTTGATGAAGCAAATACAAGTGAAGAAAACGCAGTTAATGTGATTGATCAGAAAGTTGATGAAGCTGAGAGCCGTAAGGAAAAAGGTGACACTGGTTCCCTCGATGAAAATGTTGAGGAAGATTGTGAGCCAATGACAAGGCTTCAGAATGATAAACTTACTGATTGGGAAGCTAGAAGGTATGGTTCAATGGCTGCGCGCCTTCTTCACGACATCAAAATTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

204

Amino Acids

23.15

Weight (kDa)

4.48

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 10 - 57 4.9e-08 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 583
AccIII TCCGGA 1 cut(s) 286
AcsI RAATTY 1 cut(s) 220
AcuI CTGAAG 1 cut(s) 512
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 5 cut(s) 26, 182, 225, 260, 573
AluBI AGCT 4 cut(s) 20, 311, 449, 557
AluI AGCT 4 cut(s) 20, 311, 449, 557
Aor13HI TCCGGA 1 cut(s) 286
AoxI GGCC 1 cut(s) 116
ApeKI GCWGC 2 cut(s) 308, 578
ApoI RAATTY 1 cut(s) 220
AspLEI GCGC 2 cut(s) 583, 585
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 4 cut(s) 217, 328, 382, 482
BbvCI CCTCAGC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 320, 565
BccI CCATC 2 cut(s) 130, 223
BceAI ACGGC 1 cut(s) 441
BclI TGATCA 3 cut(s) 322, 376, 430
BfaI CTAG 1 cut(s) 558
BisI GCNGC 2 cut(s) 309, 579
BlsI GCNGC 2 cut(s) 310, 580
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 84, 481
Bpu10I CCTNAGC 1 cut(s) 312
Bsa29I ATCGAT 1 cut(s) 6
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 481
BseAI TCCGGA 1 cut(s) 286
BseCI ATCGAT 1 cut(s) 6
BseGI GGATG 2 cut(s) 247, 340
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMII CTCAG 2 cut(s) 303, 441
BseNI ACTGG 1 cut(s) 481
BsePI GCGCGC 1 cut(s) 581
BseXI GCAGC 2 cut(s) 320, 565
BsgI GTGCAG 1 cut(s) 372
Bsh1236I CGCG 1 cut(s) 583
BshFI GGCC 1 cut(s) 118
BshVI ATCGAT 1 cut(s) 6
BsiSI CCGG 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 290
BsnI GGCC 1 cut(s) 118
Bsp13I TCCGGA 1 cut(s) 286
Bsp143I GATC 6 cut(s) 3, 7, 152, 322, 376, 430
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 2 cut(s) 304, 442
BspDI ATCGAT 1 cut(s) 6
BspEI TCCGGA 1 cut(s) 286
BspFNI CGCG 1 cut(s) 583
BspLI GGNNCC 2 cut(s) 84, 481
BsrI ACTGG 1 cut(s) 481
BssHII GCGCGC 1 cut(s) 581
BssMI GATC 6 cut(s) 3, 7, 152, 322, 376, 430
Bst4CI ACNGT 2 cut(s) 214, 236
BstC8I GCNNGC 1 cut(s) 583
BstDEI CTNAG 2 cut(s) 312, 450
BstF5I GGATG 2 cut(s) 247, 340
BstFNI CGCG 1 cut(s) 583
BstHHI GCGC 2 cut(s) 583, 585
BstKTI GATC 6 cut(s) 6, 10, 155, 325, 379, 433
BstMBI GATC 6 cut(s) 3, 7, 152, 322, 376, 430
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 107
BstUI CGCG 1 cut(s) 583
BstV1I GCAGC 2 cut(s) 320, 565
Bsu15I ATCGAT 1 cut(s) 6
BsuRI GGCC 1 cut(s) 118
BsuTUI ATCGAT 1 cut(s) 6
BtsCI GGATG 2 cut(s) 247, 340
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 1 cut(s) 583
CfoI GCGC 2 cut(s) 583, 585
Cfr13I GGNCC 1 cut(s) 116
ClaI ATCGAT 1 cut(s) 6
Csp6I GTAC 1 cut(s) 237
CviAII CATG 3 cut(s) 11, 104, 167
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 2 cut(s) 312, 450
DpnI GATC 6 cut(s) 5, 9, 154, 324, 378, 432
DpnII GATC 6 cut(s) 3, 7, 152, 322, 376, 430
Eco57I CTGAAG 1 cut(s) 512
EcoT22I ATGCAT 1 cut(s) 109
FaeI CATG 3 cut(s) 14, 107, 170
FaiI YATR 7 cut(s) 12, 66, 105, 144, 168, 272, 567
FatI CATG 3 cut(s) 10, 103, 166
FbaI TGATCA 3 cut(s) 322, 376, 430
Fnu4HI GCNGC 2 cut(s) 309, 579
FokI GGATG 2 cut(s) 234, 347
Fsp4HI GCNGC 2 cut(s) 309, 579
FspBI CTAG 1 cut(s) 558
GlaI GCGC 2 cut(s) 582, 584
GluI GCNGC 2 cut(s) 309, 579
HaeIII GGCC 1 cut(s) 118
HapII CCGG 1 cut(s) 287
HhaI GCGC 2 cut(s) 583, 585
Hin1II CATG 3 cut(s) 14, 107, 170
Hin6I GCGC 2 cut(s) 581, 583
HinP1I GCGC 2 cut(s) 581, 583
HinfI GANTC 1 cut(s) 148
HpaII CCGG 1 cut(s) 287
HphI GGTGA 4 cut(s) 217, 328, 382, 482
Hpy188I TCNGA 4 cut(s) 327, 381, 435, 531
Hpy188III TCNNGA 3 cut(s) 251, 287, 593
HpyAV CCTTC 2 cut(s) 555, 596
HpyCH4III ACNGT 2 cut(s) 214, 236
HpyCH4V TGCA 3 cut(s) 94, 107, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 2 cut(s) 312, 450
Hsp92II CATG 3 cut(s) 14, 107, 170
HspAI GCGC 2 cut(s) 581, 583
Kpn2I TCCGGA 1 cut(s) 286
Ksp22I TGATCA 3 cut(s) 322, 376, 430
Kzo9I GATC 6 cut(s) 3, 7, 152, 322, 376, 430
LpnPI CCDG 4 cut(s) 99, 264, 300, 462
Lsp1109I GCAGC 2 cut(s) 320, 565
MaeI CTAG 1 cut(s) 558
MaeIII GTNAC 2 cut(s) 293, 470
MalI GATC 6 cut(s) 5, 9, 154, 324, 378, 432
MboI GATC 6 cut(s) 3, 7, 152, 322, 376, 430
MboII GAAGA 4 cut(s) 368, 419, 515, 581
MluCI AATT 3 cut(s) 129, 220, 603
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 8 cut(s) 196, 283, 294, 307, 325, 337, 493, 494
Mph1103I ATGCAT 1 cut(s) 109
MroI TCCGGA 1 cut(s) 286
MseI TTAA 2 cut(s) 278, 420
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 1 cut(s) 287
MvnI CGCG 1 cut(s) 583
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 6 cut(s) 3, 7, 152, 322, 376, 430
NlaIII CATG 3 cut(s) 14, 107, 170
NlaIV GGNNCC 2 cut(s) 84, 481
NmuCI GTSAC 1 cut(s) 470
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 1 cut(s) 107
PauI GCGCGC 1 cut(s) 581
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 2 cut(s) 310, 580
PspN4I GGNNCC 2 cut(s) 84, 481
PspPI GGNCC 1 cut(s) 116
PteI GCGCGC 1 cut(s) 581
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 2 cut(s) 278, 420
SatI GCNGC 2 cut(s) 309, 579
Sau3AI GATC 6 cut(s) 3, 7, 152, 322, 376, 430
Sau96I GGNCC 1 cut(s) 116
Sse9I AATT 3 cut(s) 129, 220, 603
SspMI CTAG 1 cut(s) 558
TaaI ACNGT 2 cut(s) 214, 236
TaqI TCGA 4 cut(s) 6, 151, 201, 486
TasI AATT 3 cut(s) 129, 220, 603
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 2 cut(s) 278, 420
Tru9I TTAA 2 cut(s) 278, 420
TscAI CASTG 1 cut(s) 481
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 2 cut(s) 308, 578
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 5 cut(s) 183, 351, 405, 459, 504
TspRI CASTG 1 cut(s) 481
XapI RAATTY 1 cut(s) 220
XceI RCATGY 1 cut(s) 107
XspI CTAG 1 cut(s) 558
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.