Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009270

Physical Location & Seq

Genomic Coordinates Forward (+)

10955683 .. 10958724

Gene Structure 3042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAGAAGTGAGAGTATGCCCAAGAGATTGTCTTTGGGTGGCATAATGAGGAAGAAGCTATCCGACATCACCAATTTGCAGGCTACGAAACCAATGATCGATCATGAAAAGCCGCCGGAAGATTGTCTGACTGATAAGGACTGCATTGGGCAGCTCAGGAGGGAAAGAATGACTTTGATCAGACTTGTCGCCGAAAGGACTAAAATGGTTGAATTAGGTGGAGCTGAGTTGCAGAAACTGCGAATTAGTCTCCAGAAATTGCAGCTACAAAATTTGAGTCTTGCACAATCGAACAGCAGGATGTTAGCGGAGCTTAATTTAGGAAGAGAGAAGGTAAAAACACTACAGCATGAACTTCTATGCAAGAATGCTTTATTTAAAGCAAGGAATCTAGAAGTAGAGGGAAAAACAGAGTTTAAACGTCAAAATACTGCCTCTCAGGTATCCAAGATCAAGGAAGGAGAGGAGATATCTTTGCATAAAGCTGATAATGATGCATGTAATCTTAACAAAAGACATGCAACAAGAAGTCGATCGGTAGGCGCTTCTACTACAGGCCAAAAGGTTGAAGACAAAGAGAAGGTTGAAAATAAAAGACGGTGTTTGAGGAGGCAATCTGCTAGATTTATTTCCCAGACAGAGAACCTGTTTGAAATAGAGGATGGCAAATTACCAGTCAGTTGCACACCAGACAGTCCGATGCACAGTAGTGGTCCCACTCCATTGATTTCATCTACAACAAAAGAAGAGGGAGAAGATAATTGTGCCCCAAGGCGGTCTTCAGTTGGAAGACCATTGCGCAAAGCAGCTGAGAAGGTTAAGTCATACAAAGAAGGTTCGTTACTAGTCAAAATGCGGAGATCGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051276 GO:0051321 GO:0061983 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

290

Amino Acids

32.65

Weight (kDa)

9.74

Isoelectric Point (pI)

71.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Shugoshin_C	PF07557	263 - 287	1.6e-06	Shugoshin C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44960 AT3G44960 AT3G44960 AT3G44960 AT3G44960
fragaria_vesca	FvH4_3g30760 FvH4_3g30760
malus_domestica	MD03G1126800.v1.1 MD11G1147400.v1.1
prunus_persica	Prupe.6G111900_v2.0.a1 Prupe.6G111900_v2.0.a1
pyrus_communis	pycom11g12070
rosa_chinensis	RchiOBHm_Chr5g0056951
rosa_laevigata	RLG00000035142
rosa_multiflora	Rmu_sc0002035.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023220
rosa_rugosa	Rorug05G0304600
rosa_samantha	Rh5AG374000 Rh5BG385100 Rh5CG408300 Rh5DG398400
rosa_wichuraiana	Rw5G035210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	800
AciI	CCGC	4 cut(s)	113, 308, 775, 856
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	765
AfiI	CCNNNNNNNGG	1 cut(s)	774
AgsI	TTSAA	4 cut(s)	212, 569, 587, 653
AhlI	ACTAGT	1 cut(s)	844
AjuI	GAANNNNNNNTTGG	2 cut(s)	763, 795
AleI	CACNNNNGTG	1 cut(s)	708
AluBI	AGCT	7 cut(s)	58, 154, 224, 265, 313, 485, 809
AluI	AGCT	7 cut(s)	58, 154, 224, 265, 313, 485, 809
Alw26I	GTCTC	1 cut(s)	254
AlwNI	CAGNNNCTG	1 cut(s)	238
AoxI	GGCC	1 cut(s)	556
ApeKI	GCWGC	3 cut(s)	151, 262, 806
ApoI	RAATTY	1 cut(s)	271
ArsI	GACNNNNNNTTYG	4 cut(s)	262, 294, 660, 692
AspLEI	GCGC	2 cut(s)	545, 801
AspS9I	GGNCC	1 cut(s)	713
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	713
BaeGI	GKGCMC	1 cut(s)	769
BarI	GAAGNNNNNNTAC	2 cut(s)	825, 857
BbsI	GAAGAC	3 cut(s)	576, 771, 796
BbvI	GCAGC	3 cut(s)	163, 274, 818
BccI	CCATC	1 cut(s)	656
BciVI	GTATCC	1 cut(s)	454
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	254
BcuI	ACTAGT	1 cut(s)	844
BfaI	CTAG	3 cut(s)	392, 621, 845
BfmI	CTRYAG	2 cut(s)	344, 552
BfoI	RGCGCY	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	4 cut(s)	113, 152, 263, 807
BlsI	GCNGC	4 cut(s)	114, 153, 264, 808
Bme18I	GGWCC	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	713
BmiI	GGNNCC	1 cut(s)	715
BmsI	GCATC	2 cut(s)	484, 690
BpiI	GAAGAC	3 cut(s)	576, 771, 796
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	155
Bsa29I	ATCGAT	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	770
Bsc4I	CCNNNNNNNGG	1 cut(s)	774
Bse1I	ACTGG	1 cut(s)	674
Bse3DI	GCAATG	1 cut(s)	794
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	770
BseGI	GGATG	2 cut(s)	306, 667
BseLI	CCNNNNNNNGG	1 cut(s)	774
BseMI	GCAATG	1 cut(s)	794
BseMII	CTCAG	4 cut(s)	169, 216, 452, 801
BseNI	ACTGG	1 cut(s)	674
BseRI	GAGGAG	2 cut(s)	479, 622
BseSI	GKGCMC	1 cut(s)	769
BseXI	GCAGC	3 cut(s)	163, 274, 818
Bsh1285I	CGRYCG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	558
BshVI	ATCGAT	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	536
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	699
BslI	CCNNNNNNNGG	1 cut(s)	774
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	699
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	558
Bsp1286I	GDGCHC	1 cut(s)	769
Bsp143I	GATC	6 cut(s)	96, 100, 177, 450, 533, 860
BspACI	CCGC	4 cut(s)	113, 308, 775, 856
BspANI	GGCC	1 cut(s)	558
BspCNI	CTCAG	4 cut(s)	168, 217, 451, 802
BspDI	ATCGAT	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	715
BsrDI	GCAATG	1 cut(s)	794
BsrI	ACTGG	1 cut(s)	674
BssECI	CCNNGG	1 cut(s)	770
BssMI	GATC	6 cut(s)	96, 100, 177, 450, 533, 860
BssT1I	CCWWGG	1 cut(s)	770
Bst4CI	ACNGT	3 cut(s)	600, 695, 707
Bst6I	CTCTTC	2 cut(s)	319, 741
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	4 cut(s)	155, 225, 438, 810
BstF5I	GGATG	2 cut(s)	306, 667
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	2 cut(s)	545, 801
BstKTI	GATC	6 cut(s)	99, 103, 180, 453, 536, 863
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	6 cut(s)	96, 100, 177, 450, 533, 860
BstMCI	CGRYCG	1 cut(s)	536
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstNSI	RCATGY	2 cut(s)	501, 521
BstSFI	CTRYAG	2 cut(s)	344, 552
BstSLI	GKGCMC	1 cut(s)	769
BstV1I	GCAGC	3 cut(s)	163, 274, 818
BstV2I	GAAGAC	3 cut(s)	576, 771, 796
Bsu15I	ATCGAT	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	558
BsuTUI	ATCGAT	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	306, 667
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	238
CciI	TCATGA	1 cut(s)	103
CfoI	GCGC	2 cut(s)	545, 801
Cfr13I	GGNCC	1 cut(s)	713
ClaI	ATCGAT	1 cut(s)	99
CviAII	CATG	4 cut(s)	104, 350, 498, 518
DdeI	CTNAG	4 cut(s)	155, 225, 438, 810
DpnI	GATC	6 cut(s)	98, 102, 179, 452, 535, 862
DpnII	GATC	6 cut(s)	96, 100, 177, 450, 533, 860
DraI	TTTAAA	2 cut(s)	379, 418
Eam1104I	CTCTTC	2 cut(s)	319, 741
EarI	CTCTTC	2 cut(s)	319, 741
Eco130I	CCWWGG	1 cut(s)	770
Eco32I	GATATC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	713
Eco57I	CTGAAG	1 cut(s)	765
EcoRV	GATATC	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	770
EcoT22I	ATGCAT	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	4 cut(s)	107, 353, 501, 521
FaiI	YATR	9 cut(s)	17, 44, 105, 351, 361, 480, 499, 519, 826
FalI	AAGNNNNNCTT	4 cut(s)	157, 189, 763, 795
FaqI	GGGAC	1 cut(s)	699
FatI	CATG	4 cut(s)	103, 349, 497, 517
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	4 cut(s)	113, 152, 263, 807
FokI	GGATG	2 cut(s)	313, 674
Fsp4HI	GCNGC	4 cut(s)	113, 152, 263, 807
FspBI	CTAG	3 cut(s)	392, 621, 845
FspI	TGCGCA	1 cut(s)	800
GlaI	GCGC	2 cut(s)	544, 800
GluI	GCNGC	4 cut(s)	113, 152, 263, 807
GsuI	CTGGAG	1 cut(s)	236
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	1 cut(s)	116
HhaI	GCGC	2 cut(s)	545, 801
Hin1II	CATG	4 cut(s)	107, 353, 501, 521
Hin6I	GCGC	2 cut(s)	543, 799
HinP1I	GCGC	2 cut(s)	543, 799
HinfI	GANTC	2 cut(s)	277, 388
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	5 cut(s)	64, 129, 182, 699, 865
Hpy188III	TCNNGA	4 cut(s)	104, 157, 253, 392
HpyAV	CCTTC	5 cut(s)	325, 452, 574, 808, 827
HpyCH4III	ACNGT	3 cut(s)	600, 695, 707
HpyCH4IV	ACGT	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	4 cut(s)	155, 225, 438, 810
HpySE526I	ACGT	1 cut(s)	421
Hsp92II	CATG	4 cut(s)	107, 353, 501, 521
HspAI	GCGC	2 cut(s)	543, 799
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	6 cut(s)	96, 100, 177, 450, 533, 860
LmnI	GCTCC	2 cut(s)	221, 310
Lsp1109I	GCAGC	3 cut(s)	163, 274, 818
LweI	GCATC	2 cut(s)	484, 690
MaeI	CTAG	3 cut(s)	392, 621, 845
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	1 cut(s)	840
MalI	GATC	6 cut(s)	98, 102, 179, 452, 535, 862
MboI	GATC	6 cut(s)	96, 100, 177, 450, 533, 860
MboII	GAAGA	8 cut(s)	64, 131, 336, 581, 758, 767, 771, 801
MhlI	GDGCHC	1 cut(s)	769
MluCI	AATT	8 cut(s)	73, 212, 243, 257, 271, 316, 668, 760
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	2 cut(s)	87, 766
MnlI	CCTC	9 cut(s)	42, 153, 394, 445, 457, 600, 603, 652, 742
Mph1103I	ATGCAT	1 cut(s)	499
MseI	TTAA	5 cut(s)	315, 378, 417, 507, 819
MslI	CAYNNNNRTG	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	809
MspI	CCGG	1 cut(s)	116
MssI	GTTTAAAC	1 cut(s)	418
Mva1269I	GAATGC	1 cut(s)	373
MwoI	GCNNNNNNNGC	1 cut(s)	238
NdeII	GATC	6 cut(s)	96, 100, 177, 450, 533, 860
NlaIII	CATG	4 cut(s)	107, 353, 501, 521
NlaIV	GGNNCC	1 cut(s)	715
NsbI	TGCGCA	1 cut(s)	800
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	2 cut(s)	501, 521
OliI	CACNNNNGTG	1 cut(s)	708
PagI	TCATGA	1 cut(s)	103
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	388
PkrI	GCNGC	4 cut(s)	114, 153, 264, 808
Ple19I	CGATCG	1 cut(s)	536
PleI	GAGTC	1 cut(s)	285
PmeI	GTTTAAAC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	715
PspPI	GGNCC	1 cut(s)	713
PstNI	CAGNNNCTG	1 cut(s)	238
PvuI	CGATCG	1 cut(s)	536
PvuII	CAGCTG	1 cut(s)	809
RseI	CAYNNNNRTG	1 cut(s)	708
SaqAI	TTAA	5 cut(s)	315, 378, 417, 507, 819
SatI	GCNGC	4 cut(s)	113, 152, 263, 807
Sau3AI	GATC	6 cut(s)	96, 100, 177, 450, 533, 860
Sau96I	GGNCC	1 cut(s)	713
SchI	GAGTC	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	769
SfaNI	GCATC	2 cut(s)	484, 690
SfcI	CTRYAG	2 cut(s)	344, 552
SinI	GGWCC	1 cut(s)	713
SmiMI	CAYNNNNRTG	1 cut(s)	708
SpeI	ACTAGT	1 cut(s)	844
Sse9I	AATT	8 cut(s)	73, 212, 243, 257, 271, 316, 668, 760
SsiI	CCGC	4 cut(s)	113, 308, 775, 856
SspMI	CTAG	3 cut(s)	392, 621, 845
StyI	CCWWGG	1 cut(s)	770
TaaI	ACNGT	3 cut(s)	600, 695, 707
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	3 cut(s)	99, 290, 532
TasI	AATT	8 cut(s)	73, 212, 243, 257, 271, 316, 668, 760
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	5 cut(s)	315, 378, 417, 507, 819
Tru9I	TTAA	5 cut(s)	315, 378, 417, 507, 819
TseI	GCWGC	3 cut(s)	151, 262, 806
TspDTI	ATGAA	3 cut(s)	120, 366, 720
VpaK11BI	GGWCC	1 cut(s)	713
XapI	RAATTY	1 cut(s)	271
XbaI	TCTAGA	1 cut(s)	391
XceI	RCATGY	2 cut(s)	501, 521
XspI	CTAG	3 cut(s)	392, 621, 845
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.