pycom11g13550

Protein SGT1 homolog At5g65490-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011479
Physical Location & Seq
Forward (+)
13065342 .. 13067681
2340 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1524 bp
ATGGCGGCAGCACCACCACCACCATCCCCCAATCCATCACCTTCCGCCATCTTCTCCCAAAAAGCCTCCAGACTCCCCGACGACACCGTCTTCTACGCCATCTTTCCCGACTCCTCCCTAACCTCCACCACCACCACCGCCTCACTCCAGTCCCTTCACCTCCAAATCCTCCAAACCCTCACTCCCCTCACTGCCGACTACATATGGCAGCACGAGCCCTTCACTCTCTCCCTCTCCACTCTCCCCAATACCTCATGCCTCTGCTCCGTCGACCGCAACCTCCCCCACCTCCACGGCAAGCTCCGCGTCGCCGACAACTTCGAAGACGAGTGGTTCACCGTCTTCCTCCTCTTCCACATTTCCTCCACCTTCCCCGACCTCTCAATCAGAGTCTGGGATTCCGACGGCGAGTTCCTCCTCATCGAAGCCGCCTATCACCTCCCTCGTTGGCTCAACCCCCAAAACAGCCTCAATCGCGTGTTTATTCGCCATGGACATCTCCACATCGTTCCTAAAGCTCGACTCCCGAACCCTACCCTTACGGACTCCTTGAATTTCAGTGCGAATTTTGGGCAGGAGTCCCTTGCTGCTGAACCGGTCCAGATTGCGGTGAAGAATAGGATATCGGAGTATCCAGAAAGGGCGAGGAGGAATTTGTATGTGGGTAAGGTTAGGGTTCCTGTGGCGGTGGCGCAAGTCTTGAGTCAGGAACCGTGCCTGATTGCTCTAGCCGTTGAAGATTTCTACGACCGTGATATCGATACTATGAAGTACGCTGGGAAAATGCAGAGGTTCTTGAGTAGAGGGAGGGAAGAGGAGTTGGTATGTGTATCGGTGAAGATGTCGAGGGCAATGTACGCGCAGCTGGTGCAGCAGGCGTTTCAGGCGCCCAAGTGTTATCCAATGCCAAACACGAGCGAGGATAGGTCAGCATATATGGAGGCCGAATTGGGGATGAAGATTGCTTGCGGGATGGAGATGATGTATCAGCAGAGGAGAAAGGAGGGGTTGGAAGGGAAAGGGAGTAGTTGGGAGGCATTTAAGGAGAGCTTGGAGAGGAGTGGATACTTTGAAGGGTTGCTTCCCGGGTCGAAAGAATACCAGAGGTTGATGCAGAATGCAGAGGAGTATTATCGAAGTAGTGCTTTGTTTTCGAGGGCAAGTGATATGATGAGTGCGCCAGTGAGACGCATAGATGAAATTCTTGCTTTACCATATTCAGCTGATGATTTTAGGGGTCAAGAGGTTCCACCTTCTGACGATGATTCTTGGCTTTACAATGGAGAGGAGGAATTGAACTCAGAACTTATGGAGAGACAAAAGGAGATGGAACATTATGACTCAAAAAAGAAAAAGAAGCAGAAATCAAAGGAGCAGGACGATGCTGGTCCATCATCCAGCTCTAATGTTGATGGGTTCAATCCCGGTGATATAGCAAAAACCATGCAGGCATTTGTCCAGAAGATGTCAAGCCACGAGGGAGCTGAGGTTCCAGAGCAGGAACCTAACAGAAGTGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SGT1

Protein Analysis

508

Amino Acids

57.39

Weight (kDa)

5.34

Isoelectric Point (pI)

64.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGT1 PF07093 30 - 502 1e-167 SGT1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 886
AccI GTMKAC 1 cut(s) 270
AccII CGCG 3 cut(s) 306, 477, 860
AciI CCGC 9 cut(s) 5, 45, 138, 274, 304, 429, 608, 686, 969
AcsI RAATTY 4 cut(s) 553, 565, 652, 1200
AcyI GRCGYC 1 cut(s) 887
AfaI GTAC 2 cut(s) 773, 857
AfiI CCNNNNNNNGG 2 cut(s) 607, 951
AgeI ACCGGT 1 cut(s) 595
AgsI TTSAA 5 cut(s) 553, 737, 1073, 1297, 1420
AloI GAACNNNNNNTCC 2 cut(s) 1473, 1505
AluBI AGCT 7 cut(s) 301, 518, 865, 1050, 1223, 1401, 1484
AluI AGCT 7 cut(s) 301, 518, 865, 1050, 1223, 1401, 1484
Alw26I GTCTC 2 cut(s) 1180, 1309
AlwNI CAGNNNCTG 1 cut(s) 393
Ama87I CYCGRG 1 cut(s) 1085
AoxI GGCC 1 cut(s) 942
ApeKI GCWGC 5 cut(s) 8, 208, 587, 862, 871
ApoI RAATTY 4 cut(s) 553, 565, 652, 1200
AsiGI ACCGGT 1 cut(s) 595
AspLEI GCGC 4 cut(s) 694, 862, 889, 1180
AspS9I GGNCC 2 cut(s) 598, 1388
AsuC2I CCSGG 3 cut(s) 1086, 1087, 1425
AsuHPI GGTGA 7 cut(s) 30, 149, 328, 428, 622, 847, 1439
AsuII TTCGAA 1 cut(s) 321
AvaI CYCGRG 1 cut(s) 1085
AvaII GGWCC 2 cut(s) 598, 1388
BanI GGYRCC 1 cut(s) 886
BanII GRGCYC 1 cut(s) 219
BauI CACGAG 3 cut(s) 212, 913, 1475
BbsI GAAGAC 3 cut(s) 82, 330, 334
BbvCI CCTCAGC 1 cut(s) 1485
BbvI GCAGC 5 cut(s) 20, 220, 574, 874, 883
BccI CCATC 8 cut(s) 31, 43, 56, 107, 967, 1321, 1399, 1406
BceAI ACGGC 3 cut(s) 310, 421, 716
BciVI GTATCC 2 cut(s) 642, 1058
BcnI CCSGG 3 cut(s) 1086, 1087, 1425
BcoDI GTCTC 2 cut(s) 1180, 1309
BfaI CTAG 1 cut(s) 728
BfoI RGCGCY 1 cut(s) 890
BfuI GTATCC 2 cut(s) 642, 1058
BisI GCNGC 7 cut(s) 6, 9, 209, 429, 588, 863, 872
BlsI GCNGC 7 cut(s) 7, 10, 210, 430, 589, 864, 873
Bme1390I CCNGG 3 cut(s) 1086, 1087, 1425
Bme18I GGWCC 2 cut(s) 598, 1388
BmeT110I CYCGRG 1 cut(s) 1085
BmgT120I GGNCC 2 cut(s) 598, 1388
BmiI GGNNCC 6 cut(s) 678, 711, 888, 1248, 1491, 1503
BmrFI CCNGG 3 cut(s) 1086, 1087, 1425
BmsI GCATC 2 cut(s) 1101, 1372
BpiI GAAGAC 3 cut(s) 82, 330, 334
BpmI CTGGAG 2 cut(s) 52, 131
Bpu10I CCTNAGC 1 cut(s) 1485
Bpu14I TTCGAA 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 721, 817
BpuMI CCSGG 3 cut(s) 1086, 1087, 1425
Bsa29I ATCGAT 1 cut(s) 759
BsaHI GRCGYC 1 cut(s) 887
BsaJI CCNNGG 3 cut(s) 292, 490, 1085
BsaWI WCCGGW 1 cut(s) 595
BsaXI ACNNNNNCTCC 8 cut(s) 166, 196, 347, 377, 968, 998, 1473, 1503
Bsc4I CCNNNNNNNGG 2 cut(s) 607, 951
Bse118I RCCGGY 1 cut(s) 595
Bse1I ACTGG 2 cut(s) 148, 1181
Bse3DI GCAATG 1 cut(s) 858
BseCI ATCGAT 1 cut(s) 759
BseDI CCNNGG 3 cut(s) 292, 490, 1085
BseGI GGATG 4 cut(s) 23, 960, 978, 1394
BseLI CCNNNNNNNGG 2 cut(s) 607, 951
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 2 cut(s) 1314, 1476
BseNI ACTGG 2 cut(s) 148, 1181
BseRI GAGGAG 9 cut(s) 103, 338, 407, 661, 830, 1009, 1072, 1139, 1301
BseXI GCAGC 5 cut(s) 20, 220, 574, 874, 883
BseYI CCCAGC 1 cut(s) 776
BsgI GTGCAG 1 cut(s) 890
Bsh1236I CGCG 3 cut(s) 306, 477, 860
Bsh1285I CGRYCG 2 cut(s) 274, 751
BshFI GGCC 1 cut(s) 944
BshNI GGYRCC 1 cut(s) 886
BshTI ACCGGT 1 cut(s) 595
BshVI ATCGAT 1 cut(s) 759
BsiEI CGRYCG 2 cut(s) 274, 751
BsiHKCI CYCGRG 1 cut(s) 1085
BsiSI CCGG 3 cut(s) 596, 1086, 1425
BslFI GGGAC 2 cut(s) 136, 565
BslI CCNNNNNNNGG 2 cut(s) 607, 951
BsmAI GTCTC 2 cut(s) 1180, 1309
BsmBI CGTCTC 1 cut(s) 1180
BsmFI GGGAC 2 cut(s) 136, 565
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 1 cut(s) 944
BsoBI CYCGRG 1 cut(s) 1085
Bsp119I TTCGAA 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 219
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 9 cut(s) 5, 45, 138, 274, 304, 429, 608, 686, 969
BspANI GGCC 1 cut(s) 944
BspCNI CTCAG 2 cut(s) 1313, 1477
BspDI ATCGAT 1 cut(s) 759
BspFNI CGCG 3 cut(s) 306, 477, 860
BspLI GGNNCC 6 cut(s) 678, 711, 888, 1248, 1491, 1503
BspT104I TTCGAA 1 cut(s) 321
BspT107I GGYRCC 1 cut(s) 886
BsrDI GCAATG 1 cut(s) 858
BsrFI RCCGGY 1 cut(s) 595
BsrI ACTGG 2 cut(s) 148, 1181
BssAI RCCGGY 1 cut(s) 595
BssECI CCNNGG 3 cut(s) 292, 490, 1085
BssNI GRCGYC 1 cut(s) 887
BssSI CACGAG 3 cut(s) 212, 913, 1475
BssT1I CCWWGG 1 cut(s) 490
Bst2BI CACGAG 3 cut(s) 212, 913, 1475
Bst4CI ACNGT 4 cut(s) 88, 340, 714, 752
Bst6I CTCTTC 2 cut(s) 356, 807
BstACI GRCGYC 1 cut(s) 887
BstAPI GCANNNNNTGC 1 cut(s) 868
BstBI TTCGAA 1 cut(s) 321
BstC8I GCNNGC 4 cut(s) 299, 876, 967, 1449
BstDEI CTNAG 2 cut(s) 1300, 1485
BstDSI CCRYGG 2 cut(s) 292, 490
BstF5I GGATG 4 cut(s) 23, 960, 978, 1394
BstFNI CGCG 3 cut(s) 306, 477, 860
BstH2I RGCGCY 1 cut(s) 890
BstHHI GCGC 4 cut(s) 694, 862, 889, 1180
BstMAI GTCTC 2 cut(s) 1180, 1309
BstMCI CGRYCG 2 cut(s) 274, 751
BstMWI GCNNNNNNNGC 7 cut(s) 214, 303, 474, 857, 868, 871, 884
BstSCI CCNGG 3 cut(s) 1084, 1085, 1423
BstUI CGCG 3 cut(s) 306, 477, 860
BstV1I GCAGC 5 cut(s) 20, 220, 574, 874, 883
BstV2I GAAGAC 3 cut(s) 82, 330, 334
Bsu15I ATCGAT 1 cut(s) 759
BsuI GTATCC 2 cut(s) 642, 1058
BsuRI GGCC 1 cut(s) 944
BsuTUI ATCGAT 1 cut(s) 759
BtgI CCRYGG 2 cut(s) 292, 490
BtsCI GGATG 4 cut(s) 23, 960, 978, 1394
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 3 cut(s) 189, 565, 1188
Cac8I GCNNGC 4 cut(s) 299, 876, 967, 1449
CaiI CAGNNNCTG 1 cut(s) 393
CfoI GCGC 4 cut(s) 694, 862, 889, 1180
Cfr10I RCCGGY 1 cut(s) 595
Cfr13I GGNCC 2 cut(s) 598, 1388
Cfr9I CCCGGG 1 cut(s) 1085
ClaI ATCGAT 1 cut(s) 759
CseI GACGC 2 cut(s) 295, 1197
Csp6I GTAC 2 cut(s) 772, 856
CspAI ACCGGT 1 cut(s) 595
CviAII CATG 3 cut(s) 255, 491, 1444
CviQI GTAC 2 cut(s) 772, 856
DdeI CTNAG 2 cut(s) 1300, 1485
DinI GGCGCC 1 cut(s) 888
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
Eam1104I CTCTTC 2 cut(s) 356, 807
EarI CTCTTC 2 cut(s) 356, 807
EciI GGCGGA 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 490
Eco24I GRGCYC 1 cut(s) 219
Eco32I GATATC 2 cut(s) 624, 757
Eco47I GGWCC 2 cut(s) 598, 1388
Eco88I CYCGRG 1 cut(s) 1085
EcoRV GATATC 2 cut(s) 624, 757
EcoT14I CCWWGG 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 219
EgeI GGCGCC 1 cut(s) 888
EheI GGCGCC 1 cut(s) 888
ErhI CCWWGG 1 cut(s) 490
Esp3I CGTCTC 1 cut(s) 1180
FaeI CATG 3 cut(s) 258, 494, 1447
FalI AAGNNNNNCTT 6 cut(s) 1034, 1066, 1065, 1097, 1129, 1161
FaqI GGGAC 2 cut(s) 136, 565
FatI CATG 3 cut(s) 254, 490, 1443
FauI CCCGC 1 cut(s) 962
FauNDI CATATG 1 cut(s) 203
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 7 cut(s) 6, 9, 209, 429, 588, 863, 872
FokI GGATG 4 cut(s) 10, 967, 985, 1381
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 7 cut(s) 6, 9, 209, 429, 588, 863, 872
FspBI CTAG 1 cut(s) 728
GlaI GCGC 4 cut(s) 693, 861, 888, 1179
GluI GCNGC 7 cut(s) 6, 9, 209, 429, 588, 863, 872
GsaI CCCAGC 1 cut(s) 780
GsuI CTGGAG 2 cut(s) 52, 131
HaeII RGCGCY 1 cut(s) 890
HaeIII GGCC 1 cut(s) 944
HapII CCGG 3 cut(s) 596, 1086, 1425
HgaI GACGC 2 cut(s) 295, 1197
HhaI GCGC 4 cut(s) 694, 862, 889, 1180
Hin1I GRCGYC 1 cut(s) 887
Hin1II CATG 3 cut(s) 258, 494, 1447
Hin6I GCGC 4 cut(s) 692, 860, 887, 1178
HinP1I GCGC 4 cut(s) 692, 860, 887, 1178
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HpaII CCGG 3 cut(s) 596, 1086, 1425
HphI GGTGA 7 cut(s) 30, 149, 328, 428, 622, 847, 1439
Hpy166II GTNNAC 2 cut(s) 271, 336
Hpy188I TCNGA 5 cut(s) 389, 403, 628, 1258, 1303
Hpy8I GTNNAC 2 cut(s) 271, 336
Hpy99I CGWCG 4 cut(s) 83, 272, 311, 407
HpyAV CCTTC 7 cut(s) 51, 164, 229, 379, 1007, 1067, 1263
HpyCH4III ACNGT 4 cut(s) 88, 340, 714, 752
HpyCH4V TGCA 5 cut(s) 787, 871, 1114, 1121, 1447
HpyF10VI GCNNNNNNNGC 7 cut(s) 214, 303, 474, 857, 868, 871, 884
HpyF3I CTNAG 2 cut(s) 1300, 1485
Hsp92I GRCGYC 1 cut(s) 887
Hsp92II CATG 3 cut(s) 258, 494, 1447
HspAI GCGC 4 cut(s) 692, 860, 887, 1178
KasI GGCGCC 1 cut(s) 886
LmnI GCTCC 4 cut(s) 269, 306, 1372, 1481
Lsp1109I GCAGC 5 cut(s) 20, 220, 574, 874, 883
LweI GCATC 2 cut(s) 1101, 1372
MaeI CTAG 1 cut(s) 728
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 6 cut(s) 553, 565, 652, 947, 1200, 1292
Mly113I GGCGCC 1 cut(s) 887
MlyI GAGTC 8 cut(s) 66, 104, 399, 516, 539, 587, 712, 1334
MmeI TCCRAC 2 cut(s) 426, 990
MseI TTAA 1 cut(s) 1041
MspA1I CMGCKG 2 cut(s) 865, 1223
MspI CCGG 3 cut(s) 596, 1086, 1425
MspR9I CCNGG 3 cut(s) 1086, 1087, 1425
Mva1269I GAATGC 1 cut(s) 1123
MvnI CGCG 3 cut(s) 306, 477, 860
MwoI GCNNNNNNNGC 7 cut(s) 214, 303, 474, 857, 868, 871, 884
NarI GGCGCC 1 cut(s) 887
NciI CCSGG 3 cut(s) 1086, 1087, 1425
NcoI CCATGG 1 cut(s) 490
NdeI CATATG 1 cut(s) 203
NlaIII CATG 3 cut(s) 258, 494, 1447
NlaIV GGNNCC 6 cut(s) 678, 711, 888, 1248, 1491, 1503
NspV TTCGAA 1 cut(s) 321
PctI GAATGC 1 cut(s) 1123
PfeI GAWTC 2 cut(s) 398, 1265
PflFI GACNNNGTC 1 cut(s) 86
PinAI ACCGGT 1 cut(s) 595
PkrI GCNGC 7 cut(s) 7, 10, 210, 430, 589, 864, 873
PleI GAGTC 8 cut(s) 66, 104, 398, 516, 539, 586, 711, 1334
PluTI GGCGCC 1 cut(s) 890
PpsI GAGTC 8 cut(s) 66, 104, 398, 516, 539, 586, 711, 1334
PspFI CCCAGC 1 cut(s) 776
PspN4I GGNNCC 6 cut(s) 678, 711, 888, 1248, 1491, 1503
PspPI GGNCC 2 cut(s) 598, 1388
PstNI CAGNNNCTG 1 cut(s) 393
PsyI GACNNNGTC 1 cut(s) 86
PvuII CAGCTG 2 cut(s) 865, 1223
RsaI GTAC 2 cut(s) 773, 857
RsaNI GTAC 2 cut(s) 772, 856
SalI GTCGAC 1 cut(s) 269
SaqAI TTAA 1 cut(s) 1041
SatI GCNGC 7 cut(s) 6, 9, 209, 429, 588, 863, 872
Sau96I GGNCC 2 cut(s) 598, 1388
SchI GAGTC 8 cut(s) 66, 104, 399, 516, 539, 587, 712, 1334
ScrFI CCNGG 3 cut(s) 1086, 1087, 1425
SduI GDGCHC 1 cut(s) 219
SfaNI GCATC 2 cut(s) 1101, 1372
SfoI GGCGCC 1 cut(s) 888
SfuI TTCGAA 1 cut(s) 321
SinI GGWCC 2 cut(s) 598, 1388
SmaI CCCGGG 1 cut(s) 1087
SmlI CTYRAG 2 cut(s) 700, 796
SmoI CTYRAG 2 cut(s) 700, 796
Sse9I AATT 6 cut(s) 553, 565, 652, 947, 1200, 1292
SsiI CCGC 9 cut(s) 5, 45, 138, 274, 304, 429, 608, 686, 969
SspDI GGCGCC 1 cut(s) 886
SspMI CTAG 1 cut(s) 728
StyD4I CCNGG 3 cut(s) 1084, 1085, 1423
StyI CCWWGG 1 cut(s) 490
TaaI ACNGT 4 cut(s) 88, 340, 714, 752
TaqI TCGA 9 cut(s) 270, 321, 423, 520, 759, 845, 1091, 1135, 1154
TasI AATT 6 cut(s) 553, 565, 652, 947, 1200, 1292
TauI GCSGC 2 cut(s) 8, 431
TfiI GAWTC 2 cut(s) 398, 1265
Tru1I TTAA 1 cut(s) 1041
Tru9I TTAA 1 cut(s) 1041
TscAI CASTG 3 cut(s) 196, 565, 1188
TseI GCWGC 5 cut(s) 8, 208, 587, 862, 871
TspDTI ATGAA 3 cut(s) 782, 971, 1212
TspGWI ACGGA 2 cut(s) 256, 557
TspMI CCCGGG 1 cut(s) 1085
TspRI CASTG 3 cut(s) 196, 565, 1188
Tth111I GACNNNGTC 1 cut(s) 86
VpaK11BI GGWCC 2 cut(s) 598, 1388
XapI RAATTY 4 cut(s) 553, 565, 652, 1200
XmaI CCCGGG 1 cut(s) 1085
XmiI GTMKAC 1 cut(s) 270
XspI CTAG 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.