pycom11g14560

Protein of unknown function (DUF1279)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015262
Physical Location & Seq
Forward (+)
14558476 .. 14560040
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 579 bp
ATGGCATCAGCTCTGGCCTCCCCTTGTCTTCCTTCGGCTTCTTTCTTCAACAACAGTGGAAGTTCAAGATTTTGCTGCTGTCCATCATCGGTTCAAGCATCCAAGTCCATATCTTACTCGAAACGTTTCGGAGTCAGAGCCCTCAAGGAGAAAACCGAGGATACAAAAGCCCCATCTGCAGATTCAGCCGACGAAGTTACTAAAAAGTACGGCCTCGAAGCCGGTCTGTGGAAGATATTCAGCTCAAAAGAGGAAGGAAAGGAAGGAGAAGAGAAGTCAAAGGGAGGTGAAGCCAAGAAGCTGCTAGCAAAATATGGAGGGGCATACTTAGCCACATCCATTATTCTCTCTTTAATCTCGTTTTCCTTATGTTATGCACTCATCAGCGCCGGCGTCGATGTCCAGGCTTTGCTGCAAAAGGTGGGAATTTCTGGCAGTGAGACCGGAGAGAGGGTTGGGACGTTTGCTTTGGCATACGCTGCGCACAAGGCCGCGTCCCCAATTAGGTTTCCTCCGACAGTAGCTCTCACTCCCATTGTCGCCCGATGGATCGGAAAGAAAGTTGAGAAGGAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1279

Protein Analysis

193

Amino Acids

20.3

Weight (kDa)

9.13

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM210A-B_dom PF06916 98 - 179 8.6e-26 FAM210A/B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27290
fragaria_vesca FvH4_3g25980
malus_domestica MD03G1152600.v1.1 MD11G1172600.v1.1
prunus_persica Prupe.6G139600_v2.0.a1
pyrus_communis pycom11g14560
rosa_chinensis RchiOBHm_Chr5g0047271
rosa_laevigata RLG00000034485
rosa_multiflora Rmu_sc0003154.1_g000004
rosa_roxburghii Rroxscaffold_1G00034090
rosa_rugosa Rorug05G0235300
rosa_samantha Rh5AG314300 Rh5BG323000 Rh5CG350200 Rh5DG334000
rosa_wichuraiana Rw5G029380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 483
AccII CGCG 1 cut(s) 494
AciI CCGC 1 cut(s) 492
AclI AACGTT 1 cut(s) 124
AclWI GGATC 1 cut(s) 557
AcsI RAATTY 1 cut(s) 426
AcyI GRCGYC 1 cut(s) 393
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 3 cut(s) 228, 450, 504
AgsI TTSAA 3 cut(s) 49, 66, 95
AjnI CCWGG 1 cut(s) 402
AluBI AGCT 4 cut(s) 11, 243, 301, 524
AluI AGCT 4 cut(s) 11, 243, 301, 524
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 1 cut(s) 557
AoxI GGCC 3 cut(s) 15, 211, 489
ApeKI GCWGC 4 cut(s) 75, 301, 412, 479
ApoI RAATTY 1 cut(s) 426
ArsI GACNNNNNNTTYG 2 cut(s) 451, 483
Asp700I GAANNNNTTC 2 cut(s) 125, 236
AspLEI GCGC 2 cut(s) 389, 484
AsuHPI GGTGA 1 cut(s) 299
AsuNHI GCTAGC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 20
BbvI GCAGC 4 cut(s) 62, 288, 399, 466
BccI CCATC 3 cut(s) 91, 181, 540
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 404
BciVI GTATCC 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 434
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 177
BfoI RGCGCY 1 cut(s) 390
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 5 cut(s) 76, 302, 413, 480, 492
BlsI GCNGC 5 cut(s) 77, 303, 414, 481, 493
Bme1390I CCNGG 1 cut(s) 404
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 2 cut(s) 14, 107
BmtI GCTAGC 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 443
BsaXI ACNNNNNCTCC 2 cut(s) 438, 468
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 450, 504
Bse118I RCCGGY 2 cut(s) 221, 389
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 2 cut(s) 98, 335
BseLI CCNNNNNNNGG 3 cut(s) 228, 450, 504
BseXI GCAGC 4 cut(s) 62, 288, 399, 466
Bsh1236I CGCG 1 cut(s) 494
BshFI GGCC 3 cut(s) 17, 213, 491
BsiSI CCGG 3 cut(s) 222, 390, 444
BslFI GGGAC 2 cut(s) 472, 481
BslI CCNNNNNNNGG 3 cut(s) 228, 450, 504
BsmAI GTCTC 1 cut(s) 434
BsmFI GGGAC 2 cut(s) 472, 481
BsnI GGCC 3 cut(s) 17, 213, 491
Bso31I GGTCTC 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 549
BspACI CCGC 1 cut(s) 492
BspANI GGCC 3 cut(s) 17, 213, 491
BspFNI CGCG 1 cut(s) 494
BspMAI CTGCAG 1 cut(s) 181
BspOI GCTAGC 1 cut(s) 308
BspPI GGATC 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 434
BsrFI RCCGGY 2 cut(s) 221, 389
BssAI RCCGGY 2 cut(s) 221, 389
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 549
BssNI GRCGYC 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 2 cut(s) 56, 520
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 1 cut(s) 393
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 306, 391
BstDEI CTNAG 1 cut(s) 328
BstF5I GGATG 2 cut(s) 98, 335
BstFNI CGCG 1 cut(s) 494
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 2 cut(s) 389, 484
BstKTI GATC 1 cut(s) 552
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 1 cut(s) 549
BstMWI GCNNNNNNNGC 5 cut(s) 176, 185, 329, 479, 488
BstNI CCWGG 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 402
BstSFI CTRYAG 1 cut(s) 177
BstUI CGCG 1 cut(s) 494
BstV1I GCAGC 4 cut(s) 62, 288, 399, 466
BstV2I GAAGAC 1 cut(s) 20
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 3 cut(s) 17, 213, 491
BtsCI GGATG 2 cut(s) 98, 335
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 2 cut(s) 61, 442
Cac8I GCNNGC 2 cut(s) 306, 391
CfoI GCGC 2 cut(s) 389, 484
Cfr10I RCCGGY 2 cut(s) 221, 389
CseI GACGC 2 cut(s) 382, 483
Csp6I GTAC 1 cut(s) 208
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 328
DpnI GATC 1 cut(s) 551
DpnII GATC 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 142
FaiI YATR 6 cut(s) 110, 315, 325, 370, 375, 475
FaqI GGGAC 2 cut(s) 472, 481
Fnu4HI GCNGC 5 cut(s) 76, 302, 413, 480, 492
FokI GGATG 2 cut(s) 85, 322
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 5 cut(s) 76, 302, 413, 480, 492
FspBI CTAG 1 cut(s) 305
FspI TGCGCA 1 cut(s) 483
GlaI GCGC 2 cut(s) 388, 483
GluI GCNGC 5 cut(s) 76, 302, 413, 480, 492
HaeII RGCGCY 1 cut(s) 390
HaeIII GGCC 3 cut(s) 17, 213, 491
HapII CCGG 3 cut(s) 222, 390, 444
HgaI GACGC 2 cut(s) 382, 483
HhaI GCGC 2 cut(s) 389, 484
Hin1I GRCGYC 1 cut(s) 393
Hin6I GCGC 2 cut(s) 387, 482
HinP1I GCGC 2 cut(s) 387, 482
HinfI GANTC 2 cut(s) 132, 182
HpaII CCGG 3 cut(s) 222, 390, 444
HphI GGTGA 1 cut(s) 299
Hpy188I TCNGA 4 cut(s) 131, 137, 516, 554
Hpy188III TCNNGA 1 cut(s) 66
Hpy99I CGWCG 2 cut(s) 194, 398
HpyAV CCTTC 4 cut(s) 42, 248, 257, 562
HpyCH4III ACNGT 2 cut(s) 56, 520
HpyCH4IV ACGT 2 cut(s) 124, 461
HpyCH4V TGCA 3 cut(s) 179, 377, 415
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 185, 329, 479, 488
HpyF3I CTNAG 1 cut(s) 328
HpySE526I ACGT 2 cut(s) 124, 461
Hsp92I GRCGYC 1 cut(s) 393
HspAI GCGC 2 cut(s) 387, 482
KroI GCCGGC 1 cut(s) 389
KroNI GCCGGC 1 cut(s) 391
Kzo9I GATC 1 cut(s) 549
LpnPI CCDG 6 cut(s) 235, 389, 403, 416, 417, 457
Lsp1109I GCAGC 4 cut(s) 62, 288, 399, 466
LweI GCATC 2 cut(s) 14, 107
MaeI CTAG 1 cut(s) 305
MaeII ACGT 2 cut(s) 124, 461
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 551
MboI GATC 1 cut(s) 549
MboII GAAGA 4 cut(s) 20, 37, 244, 281
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 2 cut(s) 426, 501
MlyI GAGTC 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 539
MreI CGCCGGCG 1 cut(s) 389
MroNI GCCGGC 1 cut(s) 389
MroXI GAANNNNTTC 2 cut(s) 125, 236
MseI TTAA 1 cut(s) 353
MspI CCGG 3 cut(s) 222, 390, 444
MspR9I CCNGG 1 cut(s) 404
MvaI CCWGG 1 cut(s) 404
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 5 cut(s) 176, 185, 329, 479, 488
NaeI GCCGGC 1 cut(s) 391
NdeII GATC 1 cut(s) 549
NgoMIV GCCGGC 1 cut(s) 389
NheI GCTAGC 1 cut(s) 304
NsbI TGCGCA 1 cut(s) 483
PdiI GCCGGC 1 cut(s) 391
PdmI GAANNNNTTC 2 cut(s) 125, 236
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 5 cut(s) 77, 303, 414, 481, 493
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Psp1406I AACGTT 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
PstI CTGCAG 1 cut(s) 181
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 5 cut(s) 76, 302, 413, 480, 492
Sau3AI GATC 1 cut(s) 549
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 404
SduI GDGCHC 1 cut(s) 142
SetI ASST 9 cut(s) 13, 127, 245, 289, 303, 423, 464, 509, 526
SfaNI GCATC 2 cut(s) 14, 107
SfcI CTRYAG 1 cut(s) 177
SgrAI CRCCGGYG 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 2 cut(s) 426, 501
SsiI CCGC 1 cut(s) 492
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 402
TaaI ACNGT 2 cut(s) 56, 520
TaiI ACGT 2 cut(s) 127, 464
TaqI TCGA 3 cut(s) 119, 216, 396
TasI AATT 2 cut(s) 426, 501
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 2 cut(s) 61, 442
TseI GCWGC 4 cut(s) 75, 301, 412, 479
TspRI CASTG 2 cut(s) 61, 442
XapI RAATTY 1 cut(s) 426
XmnI GAANNNNTTC 2 cut(s) 125, 236
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.