pycom11g14850

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011415
Physical Location & Seq
Reverse (-)
15150323 .. 15156646
6324 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 816 bp
ATGCTTAAAAGTTTGGCAGTGGAGGAAGGAAGATTGAAAAGGCTATTCTTGAGATTTCAATCTCCGAGGCGAAGCTTTAGAGCGACATCCATGGACGACGATTTGCTTCTCAAGAACTTCTTCGCTGAAGTTAGTGAAGTTGAGCGGGACAACCAAGTCCTCAGGATCCTCTCCTGCTTCAAGTTAAATCCTTTTGAGTATCTTAACTTACCCTTTGATGCATCCCCAGAAGATGTCAAAAGGCAGTATCGTAAGTTATCCTTAATGGTTCACCCTGATAAATGCAAGCATCCACAGGCTAAGGAGGCATTTGGAGCATTGGCAAAAGCCCAACAACTATTACTTGATCAACAGGAAAGGGATTATATCATTAGCCAAGTAAATGCCGCCAAAGAAGAACTTAGAGCTAAAAGGAAGAAGCAGTTGAAGAAAGATACAGCTTCTAAAATAAAATCATTGGTTGATGAGGGAAAATACGAGCACCAGTATGAACAGTCAGAAGAGTTCCAGCAAGAACTCAAAATGAAGGTTCGAGATATATTAACAGAACAAGAATGGCGAAGGAGAAAAATGCAAATGAGGATTTCAGAAGAGGAAGGTAGATTGAAAAAAGATGAAGAAGAAACCAAAGAGATGTGGAAAAGGAAACGGGAGCATGAGGAACAATGGGAAGGAACAAGAGAACAGAGGGTTTCAAGCTGGAGGGATTTTATGAAGGGTGGAAAGAAGGCCAAAAAGGGAGAAATTCGACCTCCTAAGCTCAAGACTGAAGACCCTAACAAATCTTATGTTCAAAGGCCGGTAAAACGAGGTTGA

Protein Analysis

272

Amino Acids

32.51

Weight (kDa)

9.62

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 64 - 120 8.2e-15 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011415)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22080 AT5G22080
fragaria_vesca FvH4_5g27361
malus_domestica MD03G1156500.v1.1 MD11G1174000.v1.1
prunus_persica Prupe.6G145600_v2.0.a1
pyrus_communis pycom11g14850
rosa_chinensis RchiOBHm_Chr7g0218521
rosa_laevigata RLG00000002363
rosa_multiflora Rmu_sc0001301.1_g000039
rosa_roxburghii Rroxscaffold_3G00240870
rosa_rugosa Rorug07G0177800 Rorug07G0177900 Rorug07G0178000 Rorug07G0178100
rosa_samantha Rh7AG319300 Rh7BG311100 Rh7CG336100 Rh7DG318400
rosa_wichuraiana Rw7G027200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
AccBSI CCGCTC 1 cut(s) 145
AciI CCGC 2 cut(s) 145, 387
AclWI GGATC 2 cut(s) 160, 173
AcsI RAATTY 1 cut(s) 744
AcuI CTGAAG 2 cut(s) 147, 789
AgsI TTSAA 7 cut(s) 37, 59, 181, 427, 607, 696, 794
AluBI AGCT 5 cut(s) 75, 407, 440, 699, 760
AluI AGCT 5 cut(s) 75, 407, 440, 699, 760
Alw21I GWGCWC 1 cut(s) 483
AlwI GGATC 2 cut(s) 160, 173
AoxI GGCC 2 cut(s) 729, 797
ApoI RAATTY 1 cut(s) 744
Asp700I GAANNNNTTC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 263
AxyI CCTNAGG 1 cut(s) 161
BamHI GGATCC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 777
Bbv12I GWGCWC 1 cut(s) 483
BclI TGATCA 1 cut(s) 346
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
BmiI GGNNCC 1 cut(s) 167
BmsI GCATC 3 cut(s) 208, 230, 298
BpiI GAAGAC 1 cut(s) 777
BpmI CTGGAG 1 cut(s) 721
Bpu10I CCTNAGC 2 cut(s) 300, 756
BpuEI CTTGAG 3 cut(s) 70, 95, 746
BsaBI GATNNNNATC 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 65, 90
Bse118I RCCGGY 1 cut(s) 799
Bse1I ACTGG 1 cut(s) 484
Bse21I CCTNAGG 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 58
BseDI CCNNGG 2 cut(s) 65, 90
BseGI GGATG 3 cut(s) 86, 221, 289
BseJI GATNNNNATC 1 cut(s) 58
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 484
BshFI GGCC 2 cut(s) 731, 799
BsiHKAI GWGCWC 1 cut(s) 483
BsiSI CCGG 1 cut(s) 800
BslFI GGGAC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 2 cut(s) 731, 799
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 2 cut(s) 165, 346
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 2 cut(s) 145, 387
BspANI GGCC 2 cut(s) 731, 799
BspCNI CTCAG 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 167
BspPI GGATC 2 cut(s) 160, 173
BsrBI CCGCTC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 799
BsrI ACTGG 1 cut(s) 484
BssAI RCCGGY 1 cut(s) 799
BssECI CCNNGG 2 cut(s) 65, 90
BssMI GATC 2 cut(s) 165, 346
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 495
Bst6I CTCTTC 2 cut(s) 495, 585
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 4 cut(s) 161, 300, 401, 756
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 3 cut(s) 86, 221, 289
BstKTI GATC 2 cut(s) 168, 349
BstMBI GATC 2 cut(s) 165, 346
BstMWI GCNNNNNNNGC 2 cut(s) 305, 314
BstV2I GAAGAC 1 cut(s) 777
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
Bsu36I CCTNAGG 1 cut(s) 161
BsuRI GGCC 2 cut(s) 731, 799
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 3 cut(s) 86, 221, 289
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 799
CviAII CATG 2 cut(s) 91, 656
DdeI CTNAG 4 cut(s) 161, 300, 401, 756
DpnI GATC 2 cut(s) 167, 348
DpnII GATC 2 cut(s) 165, 346
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
Eam1104I CTCTTC 2 cut(s) 495, 585
EarI CTCTTC 2 cut(s) 495, 585
Eco130I CCWWGG 1 cut(s) 90
Eco57I CTGAAG 2 cut(s) 147, 789
Eco81I CCTNAGG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 90
EcoT22I ATGCAT 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 94, 659
FaiI YATR 7 cut(s) 92, 366, 489, 539, 657, 713, 789
FalI AAGNNNNNCTT 6 cut(s) 104, 136, 245, 277, 384, 416
FaqI GGGAC 1 cut(s) 161
FatI CATG 2 cut(s) 90, 655
FauI CCCGC 1 cut(s) 138
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 3 cut(s) 73, 208, 276
Fsp4HI GCNGC 1 cut(s) 387
GluI GCNGC 1 cut(s) 387
GsuI CTGGAG 1 cut(s) 721
HaeIII GGCC 2 cut(s) 731, 799
HapII CCGG 1 cut(s) 800
Hin1II CATG 2 cut(s) 94, 659
HindIII AAGCTT 1 cut(s) 73
HpaII CCGG 1 cut(s) 800
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 3 cut(s) 66, 499, 589
Hpy188III TCNNGA 5 cut(s) 49, 112, 163, 533, 763
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 7 cut(s) 20, 520, 555, 590, 665, 709, 721
HpyCH4III ACNGT 1 cut(s) 495
HpyCH4V TGCA 3 cut(s) 221, 285, 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 314
HpyF3I CTNAG 4 cut(s) 161, 300, 401, 756
Hsp92II CATG 2 cut(s) 94, 659
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 2 cut(s) 165, 346
LmnI GCTCC 2 cut(s) 314, 652
LpnPI CCDG 9 cut(s) 148, 187, 240, 281, 288, 338, 497, 521, 685
LweI GCATC 3 cut(s) 208, 230, 298
MalI GATC 2 cut(s) 167, 348
MbiI CCGCTC 1 cut(s) 145
MboI GATC 2 cut(s) 165, 346
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 1 cut(s) 744
Mph1103I ATGCAT 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 5 cut(s) 6, 185, 204, 263, 542
MslI CAYNNNNRTG 1 cut(s) 486
MspI CCGG 1 cut(s) 800
MwoI GCNNNNNNNGC 2 cut(s) 305, 314
NcoI CCATGG 1 cut(s) 90
NdeII GATC 2 cut(s) 165, 346
NlaIII CATG 2 cut(s) 94, 659
NlaIV GGNNCC 1 cut(s) 167
NsiI ATGCAT 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 388
PspN4I GGNNCC 1 cut(s) 167
PsuI RGATCY 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 5 cut(s) 6, 185, 204, 263, 542
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 2 cut(s) 165, 346
SduI GDGCHC 1 cut(s) 483
SetI ASST 9 cut(s) 77, 409, 442, 531, 601, 701, 754, 762, 814
SfaNI GCATC 3 cut(s) 208, 230, 298
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 3 cut(s) 49, 110, 761
SmoI CTYRAG 3 cut(s) 49, 110, 761
Sse9I AATT 1 cut(s) 744
SsiI CCGC 2 cut(s) 145, 387
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 495
TaqI TCGA 2 cut(s) 532, 748
TasI AATT 1 cut(s) 744
TauI GCSGC 1 cut(s) 389
Tru1I TTAA 5 cut(s) 6, 185, 204, 263, 542
Tru9I TTAA 5 cut(s) 6, 185, 204, 263, 542
TscAI CASTG 1 cut(s) 24
TspDTI ATGAA 4 cut(s) 504, 539, 630, 728
TspRI CASTG 1 cut(s) 24
XapI RAATTY 1 cut(s) 744
XmnI GAANNNNTTC 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.