Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0015354

Physical Location & Seq

Genomic Coordinates Forward (+)

15250577 .. 15251835

Gene Structure 1259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGAGCACAGAAGAGCATTCATGCTGGCAAAGCCAAGATTGACGTCAATGTTGATTTCACTCACAAGCTTTGTGCTTCGTTGATGCTTCCTCCTTTGAGTAATGGTAGTGGCAGTCCTCTGTCTCTGATAATTGGAAGTCTTTGCATCAAACATCCAAATTTATTTGGGGGAAGTGAGAAGCTTGATGTGTCATGGGATAAGGGGCTGTATGATTCTAATGTTTTGCTGGCTTATAGAAGACCGAGACCCGAATGGCTAGCTCAACAGTCCTTTGTAATACAGCATTCTATTTCACCCGAGATAGGGGTTCACGGCATTCCCATGGACAATTTCTCACGTTCAGGTAGTGGAGGTGTGAATTTATCTCGATTATCAGTAGGCATGGATCTGAATGAACCTTCAAGTTCCAAATGGAGTAGCACAACTAGCATAAAGTTTGAGCATGTCCGGCCAGTGAATGATAATGGGCGCCCTATCAGCCTAGATCTTGATGGGTTTCCTGTCACCTGCAGGCAGTGGAAGTCCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

178

Amino Acids

19.27

Weight (kDa)

8.84

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44160
fragaria_vesca	FvH4_3g26270
malus_domestica	MD11G1174200.v1.1
prunus_persica	Prupe.6G146000_v2.0.a1
pyrus_communis	pycom11g14900
rosa_chinensis	RchiOBHm_Chr5g0048701
rosa_laevigata	RLG00000034550
rosa_multiflora	Rmu_sc0006432.1_g000004
rosa_roxburghii	Rroxscaffold_1G00033100
rosa_rugosa	Rorug05G0240700
rosa_samantha	Rh5AG320500 Rh5BG330200 Rh5CG356200 Rh5DG341400
rosa_wichuraiana	Rw5G030170 Rw5G030260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	518
AatII	GACGTC	1 cut(s)	48
Acc36I	ACCTGC	1 cut(s)	518
AccB1I	GGYRCC	1 cut(s)	471
AclWI	GGATC	1 cut(s)	396
AcoI	YGGCCR	1 cut(s)	452
AcsI	RAATTY	2 cut(s)	160, 361
AcyI	GRCGYC	2 cut(s)	45, 472
AfiI	CCNNNNNNNGG	2 cut(s)	305, 306
AgsI	TTSAA	1 cut(s)	405
AluBI	AGCT	3 cut(s)	70, 184, 263
AluI	AGCT	3 cut(s)	70, 184, 263
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	129, 241
AlwI	GGATC	1 cut(s)	396
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	452
ApoI	RAATTY	2 cut(s)	160, 361
AspLEI	GCGC	1 cut(s)	474
AsuHPI	GGTGA	2 cut(s)	288, 499
AsuNHI	GCTAGC	1 cut(s)	259
AvaI	CYCGRG	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	471
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	10
BccI	CCATC	1 cut(s)	488
BceAI	ACGGC	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	129, 241
BfaI	CTAG	3 cut(s)	260, 429, 485
BfmI	CTRYAG	1 cut(s)	511
BfoI	RGCGCY	1 cut(s)	475
BfuAI	ACCTGC	1 cut(s)	518
BglII	AGATCT	1 cut(s)	487
BmeT110I	CYCGRG	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	473
BmsI	GCATC	2 cut(s)	75, 156
BmtI	GCTAGC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	247
BsaHI	GRCGYC	2 cut(s)	45, 472
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 306
Bse1I	ACTGG	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	305, 306
BseNI	ACTGG	1 cut(s)	455
BshFI	GGCC	1 cut(s)	454
BshNI	GGYRCC	1 cut(s)	471
BsiHKAI	GWGCWC	1 cut(s)	10
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	451
BslFI	GGGAC	1 cut(s)	511
BslI	CCNNNNNNNGG	2 cut(s)	305, 306
BsmAI	GTCTC	2 cut(s)	129, 241
BsmFI	GGGAC	1 cut(s)	511
BsmI	GAATGC	3 cut(s)	18, 286, 318
BsnI	GGCC	1 cut(s)	454
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	388, 487
Bsp19I	CCATGG	1 cut(s)	324
BspANI	GGCC	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	473
BspMAI	CTGCAG	1 cut(s)	515
BspMI	ACCTGC	1 cut(s)	518
BspOI	GCTAGC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	396
BspQI	GCTCTTC	1 cut(s)	8
BspT107I	GGYRCC	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	455
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	2 cut(s)	388, 487
BssNI	GRCGYC	2 cut(s)	45, 472
BssT1I	CCWWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	2 cut(s)	45, 472
BstC8I	GCNNGC	4 cut(s)	28, 231, 261, 515
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	154
BstH2I	RGCGCY	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	2 cut(s)	391, 490
BstMAI	GTCTC	2 cut(s)	129, 241
BstMBI	GATC	2 cut(s)	388, 487
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 429, 451, 480
BstNSI	RCATGY	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	511
BstV2I	GAAGAC	1 cut(s)	247
BstX2I	RGATCY	2 cut(s)	388, 487
BstYI	RGATCY	2 cut(s)	388, 487
BsuRI	GGCC	1 cut(s)	454
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	524
BtsIMutI	CAGTG	2 cut(s)	462, 524
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	4 cut(s)	28, 231, 261, 515
CfoI	GCGC	1 cut(s)	474
CviAII	CATG	6 cut(s)	23, 195, 325, 385, 446, 531
CviJI	RGCY	9 cut(s)	35, 70, 184, 208, 233, 259, 263, 454, 483
CviKI_1	RGCY	9 cut(s)	35, 70, 184, 208, 233, 259, 263, 454, 483
DinI	GGCGCC	1 cut(s)	473
DpnI	GATC	2 cut(s)	390, 489
DpnII	GATC	2 cut(s)	388, 487
EaeI	YGGCCR	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	324
EgeI	GGCGCC	1 cut(s)	473
EheI	GGCGCC	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	6 cut(s)	26, 198, 328, 388, 449, 534
FaiI	YATR	9 cut(s)	24, 196, 213, 237, 326, 386, 434, 447, 532
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	6 cut(s)	22, 194, 324, 384, 445, 530
FokI	GGATG	1 cut(s)	141
FspBI	CTAG	3 cut(s)	260, 429, 485
GlaI	GCGC	1 cut(s)	473
HaeII	RGCGCY	1 cut(s)	475
HaeIII	GGCC	1 cut(s)	454
HapII	CCGG	1 cut(s)	451
HhaI	GCGC	1 cut(s)	474
Hin1I	GRCGYC	2 cut(s)	45, 472
Hin1II	CATG	6 cut(s)	26, 198, 328, 388, 449, 534
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HindIII	AAGCTT	2 cut(s)	68, 182
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	451
HphI	GGTGA	2 cut(s)	288, 499
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	129, 393
Hpy188III	TCNNGA	2 cut(s)	369, 491
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	411
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4IV	ACGT	2 cut(s)	45, 340
HpyCH4V	TGCA	2 cut(s)	147, 513
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 429, 451, 480
HpySE526I	ACGT	2 cut(s)	45, 340
Hsp92I	GRCGYC	2 cut(s)	45, 472
Hsp92II	CATG	6 cut(s)	26, 198, 328, 388, 449, 534
HspAI	GCGC	1 cut(s)	472
KasI	GGCGCC	1 cut(s)	471
Kzo9I	GATC	2 cut(s)	388, 487
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	8 cut(s)	12, 215, 330, 464, 468, 499, 516, 523
LweI	GCATC	2 cut(s)	75, 156
MaeI	CTAG	3 cut(s)	260, 429, 485
MaeII	ACGT	2 cut(s)	45, 340
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	2 cut(s)	390, 489
MboI	GATC	2 cut(s)	388, 487
MboII	GAAGA	2 cut(s)	25, 252
MflI	RGATCY	2 cut(s)	388, 487
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	4 cut(s)	132, 160, 331, 361
Mly113I	GGCGCC	1 cut(s)	472
MnlI	CCTC	3 cut(s)	102, 129, 347
MslI	CAYNNNNRTG	1 cut(s)	323
MspI	CCGG	1 cut(s)	451
Mva1269I	GAATGC	3 cut(s)	18, 286, 318
MwoI	GCNNNNNNNGC	4 cut(s)	32, 429, 451, 480
NarI	GGCGCC	1 cut(s)	472
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	2 cut(s)	388, 487
NheI	GCTAGC	1 cut(s)	259
NlaIII	CATG	6 cut(s)	26, 198, 328, 388, 449, 534
NlaIV	GGNNCC	1 cut(s)	473
NmuCI	GTSAC	1 cut(s)	505
NspI	RCATGY	1 cut(s)	449
PaqCI	CACCTGC	1 cut(s)	518
PciSI	GCTCTTC	1 cut(s)	8
PctI	GAATGC	3 cut(s)	18, 286, 318
PfeI	GAWTC	1 cut(s)	215
PluTI	GGCGCC	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	473
PstI	CTGCAG	1 cut(s)	515
PsuI	RGATCY	2 cut(s)	388, 487
RseI	CAYNNNNRTG	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	8
Sau3AI	GATC	2 cut(s)	388, 487
SbfI	CCTGCAGG	1 cut(s)	515
SdaI	CCTGCAGG	1 cut(s)	515
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	9 cut(s)	48, 72, 186, 265, 343, 349, 358, 403, 512
SfaNI	GCATC	2 cut(s)	75, 156
SfcI	CTRYAG	1 cut(s)	511
SfoI	GGCGCC	1 cut(s)	473
SmiMI	CAYNNNNRTG	1 cut(s)	323
Sse8387I	CCTGCAGG	1 cut(s)	515
Sse9I	AATT	4 cut(s)	132, 160, 331, 361
SspDI	GGCGCC	1 cut(s)	471
SspMI	CTAG	3 cut(s)	260, 429, 485
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	270
TaiI	ACGT	2 cut(s)	48, 343
TaqI	TCGA	1 cut(s)	370
TaqII	GACCGA	1 cut(s)	259
TasI	AATT	4 cut(s)	132, 160, 331, 361
TfiI	GAWTC	1 cut(s)	215
TscAI	CASTG	2 cut(s)	462, 524
TseFI	GTSAC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	2 cut(s)	11, 411
TspRI	CASTG	2 cut(s)	462, 524
XapI	RAATTY	2 cut(s)	160, 361
XceI	RCATGY	1 cut(s)	449
XspI	CTAG	3 cut(s)	260, 429, 485
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.