pycom11g14920

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
15277980 .. 15282240
4261 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 450 bp
ATGTTTTTAGGAAGAAGAAAAAAGGGTGGGATAAAATTTGGAGAATTGGGAGAGTACAAGAATCAGCACTTCAGCAATAAGTACGTTTTTACCACCACCGCCATGGACGACGCTGAATTTCGACGCCTTCTCGATCTCTTCCCAATCGTCCGATCTCGCGACTACCATGCTGAATCAGAACAATCTAGAGAATCAACTTCTAAGTCAGCACAGCATGAAGAGCATAAAGAATGGCAAGATGCATGGGATGAGGGAGATAAAATTGAAGTGGAGAAGCAAGGACTTGACGAACATGGTGAATTCTGGGAGAAGCTAAAGTTGATCGCTGAGAGAAAGGTGGGTGCAGCAGAAGCGGAGAGATTTTGCAAGGCATTTCAACGAATCCACAAGAAACTCGTCTATGAAGAACTGAGTTTGGATGCTGCCCAAAAATTCCTGAACTCGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.52

Weight (kDa)

6.1

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010096)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 159
AciI CCGC 2 cut(s) 99, 353
AcsI RAATTY 4 cut(s) 35, 116, 299, 431
AcuI CTGAAG 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 2 cut(s) 56, 83
AgsI TTSAA 2 cut(s) 266, 377
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
ApeKI GCWGC 2 cut(s) 344, 422
ApoI RAATTY 4 cut(s) 35, 116, 299, 431
AsuHPI GGTGA 1 cut(s) 308
BbvI GCAGC 2 cut(s) 356, 409
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BfaI CTAG 1 cut(s) 186
BisI GCNGC 2 cut(s) 345, 423
BlsI GCNGC 2 cut(s) 346, 424
BmsI GCATC 2 cut(s) 229, 409
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 2 cut(s) 253, 424
BseMII CTCAG 2 cut(s) 318, 401
BseXI GCAGC 2 cut(s) 356, 409
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 159
Bsp143I GATC 3 cut(s) 133, 152, 321
Bsp19I CCATGG 1 cut(s) 102
Bsp68I TCGCGA 1 cut(s) 159
BspACI CCGC 2 cut(s) 99, 353
BspCNI CTCAG 2 cut(s) 319, 402
BspFNI CGCG 1 cut(s) 159
BspQI GCTCTTC 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 3 cut(s) 133, 152, 321
BssNI GRCGYC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 102
Bst6I CTCTTC 2 cut(s) 143, 213
BstACI GRCGYC 1 cut(s) 124
BstDEI CTNAG 3 cut(s) 201, 327, 410
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 2 cut(s) 253, 424
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 3 cut(s) 136, 155, 324
BstMBI GATC 3 cut(s) 133, 152, 321
BstMWI GCNNNNNNNGC 2 cut(s) 220, 350
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 356, 409
BstXI CCANNNNNNTGG 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 2 cut(s) 253, 424
BtuMI TCGCGA 1 cut(s) 159
CseI GACGC 2 cut(s) 119, 132
Csp6I GTAC 2 cut(s) 55, 82
CviAII CATG 5 cut(s) 103, 167, 215, 243, 293
CviJI RGCY 1 cut(s) 313
CviKI_1 RGCY 1 cut(s) 313
CviQI GTAC 2 cut(s) 55, 82
DdeI CTNAG 3 cut(s) 201, 327, 410
DpnI GATC 3 cut(s) 135, 154, 323
DpnII GATC 3 cut(s) 133, 152, 321
Eam1104I CTCTTC 2 cut(s) 143, 213
EarI CTCTTC 2 cut(s) 143, 213
Eco130I CCWWGG 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 5 cut(s) 106, 170, 218, 246, 296
FaiI YATR 7 cut(s) 104, 168, 216, 225, 244, 294, 402
FatI CATG 5 cut(s) 102, 166, 214, 242, 292
Fnu4HI GCNGC 2 cut(s) 345, 423
FokI GGATG 2 cut(s) 260, 431
Fsp4HI GCNGC 2 cut(s) 345, 423
FspBI CTAG 1 cut(s) 186
GluI GCNGC 2 cut(s) 345, 423
HgaI GACGC 2 cut(s) 119, 132
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 5 cut(s) 106, 170, 218, 246, 296
HinfI GANTC 4 cut(s) 61, 173, 191, 381
HphI GGTGA 1 cut(s) 308
Hpy188I TCNGA 2 cut(s) 152, 178
Hpy188III TCNNGA 5 cut(s) 131, 158, 186, 436, 447
Hpy99I CGWCG 3 cut(s) 113, 126, 448
HpyAV CCTTC 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 242, 344, 366
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 350
HpyF3I CTNAG 3 cut(s) 201, 327, 410
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 5 cut(s) 106, 170, 218, 246, 296
Kzo9I GATC 3 cut(s) 133, 152, 321
LguI GCTCTTC 1 cut(s) 213
LpnPI CCDG 1 cut(s) 289
Lsp1109I GCAGC 2 cut(s) 356, 409
LweI GCATC 2 cut(s) 229, 409
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 84
MalI GATC 3 cut(s) 135, 154, 323
MboI GATC 3 cut(s) 133, 152, 321
MboII GAAGA 5 cut(s) 24, 27, 130, 230, 416
MluCI AATT 6 cut(s) 35, 44, 116, 261, 299, 431
MnlI CCTC 1 cut(s) 244
Mph1103I ATGCAT 1 cut(s) 244
MslI CAYNNNNRTG 1 cut(s) 101
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 220, 350
NcoI CCATGG 1 cut(s) 102
NdeII GATC 3 cut(s) 133, 152, 321
NlaIII CATG 5 cut(s) 106, 170, 218, 246, 296
NruI TCGCGA 1 cut(s) 159
NsiI ATGCAT 1 cut(s) 244
PciSI GCTCTTC 1 cut(s) 213
PfeI GAWTC 4 cut(s) 61, 173, 191, 381
PkrI GCNGC 2 cut(s) 346, 424
RruI TCGCGA 1 cut(s) 159
RsaI GTAC 2 cut(s) 56, 83
RsaNI GTAC 2 cut(s) 55, 82
RseI CAYNNNNRTG 1 cut(s) 101
SapI GCTCTTC 1 cut(s) 213
SatI GCNGC 2 cut(s) 345, 423
Sau3AI GATC 3 cut(s) 133, 152, 321
SetI ASST 3 cut(s) 87, 315, 339
SfaNI GCATC 2 cut(s) 229, 409
SmiMI CAYNNNNRTG 1 cut(s) 101
Sse9I AATT 6 cut(s) 35, 44, 116, 261, 299, 431
SsiI CCGC 2 cut(s) 99, 353
SspMI CTAG 1 cut(s) 186
StyI CCWWGG 1 cut(s) 102
TaiI ACGT 1 cut(s) 87
TaqI TCGA 2 cut(s) 121, 132
TasI AATT 6 cut(s) 35, 44, 116, 261, 299, 431
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 4 cut(s) 61, 173, 191, 381
TseI GCWGC 2 cut(s) 344, 422
TspDTI ATGAA 2 cut(s) 231, 417
XapI RAATTY 4 cut(s) 35, 116, 299, 431
XbaI TCTAGA 1 cut(s) 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XspI CTAG 1 cut(s) 186
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.