Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010819

Physical Location & Seq

Genomic Coordinates Forward (+)

20694081 .. 20695391

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAAGCACTCGGGTCGAGATTGGGCAGGGCGTCCTCCAGGTACGGCCAAACAGCCACCGTCTTCAGCGGCCCCGTCCGCAGGTGGAAGAAGAGGTGGGTCCACGTGTCATCTTCATCCCCCTCCCTTACTTACCAAAACCCTCACTCCCAATCCAACAACAGCAGCTCTCGCCTCCTCCTCTGCCGCTGGACCCCAATCTCTTCCGCTACCTCCCCCGACGAACCCGCCGCGGCTTCGGATGAGCCCCCTCGCCGGAAGTTCCGCTACACGCCGGTTTCTGTGCTAGAGGAACAGAAAAAGCCAATTCAGAAAAAGGTTGGAGATGAGGAGAAAACTAGTGAGACTGATGAATCGGTTAGCCCAAGTGATAAGGTGCATGGAAAGCCAAATATTAATCAGATTATGAAGGAACAAGCTGAGGGTGCTACAACTTGGCGCTATGGACATAAGGTCTGCAACATATGGCCGTGGTGTTGGTCTAGGAGGAGCAAGTATTTGTATTCTGTTCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.54

Weight (kDa)

9.8

Isoelectric Point (pI)

71.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55210
fragaria_vesca	FvH4_3g23530 FvH4_3g23530 FvH4_3g23530
malus_domestica	MD03G1193400.v1.1 MD11G1209600.v1.1
prunus_persica	Prupe.4G223100_v2.0.a1
pyrus_communis	pycom11g18510
rosa_chinensis	RchiOBHm_Chr5g0041531
rosa_laevigata	RLG00000034076
rosa_multiflora	Rmu_co8457507.1_g000001 Rmu_sc0014067.1_g000008 Rmu_sc0021997.1_g000002 Rmu_sc0029151.1_g000002
rosa_roxburghii	Rroxscaffold_1G00039000
rosa_rugosa	Rorug05G0193400
rosa_samantha	Rh5AG278900 Rh5BG283300 Rh5CG316200
rosa_wichuraiana	Rw5G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	72
AccII	CGCG	1 cut(s)	233
AciI	CCGC	8 cut(s)	69, 79, 187, 207, 228, 231, 233, 265
AcoI	YGGCCR	2 cut(s)	46, 467
AcuI	CTGAAG	1 cut(s)	49
AcvI	CACGTG	1 cut(s)	106
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	2 cut(s)	81, 255
AflIII	ACRYGT	1 cut(s)	105
AhdI	GACNNNNNGTC	1 cut(s)	452
AhlI	ACTAGT	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	2 cut(s)	168, 419
AluI	AGCT	2 cut(s)	168, 419
Alw26I	GTCTC	1 cut(s)	338
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	3 cut(s)	46, 70, 467
ApeKI	GCWGC	1 cut(s)	165
AseI	ATTAAT	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	441
AspS9I	GGNCC	3 cut(s)	71, 100, 192
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	2 cut(s)	100, 192
BanII	GRGCYC	1 cut(s)	249
BarI	GAAGNNNNNNTAC	2 cut(s)	251, 283
BbrPI	CACGTG	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	55
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	177
BceAI	ACGGC	2 cut(s)	61, 454
BcgI	CGANNNNNNTGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	338
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	3 cut(s)	287, 339, 483
BfoI	RGCGCY	1 cut(s)	442
BfuAI	ACCTGC	1 cut(s)	72
BisI	GCNGC	5 cut(s)	70, 166, 187, 231, 234
BlsI	GCNGC	5 cut(s)	71, 167, 188, 232, 235
Bme1390I	CCNGG	1 cut(s)	40
Bme18I	GGWCC	2 cut(s)	100, 192
BmeRI	GACNNNNNGTC	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	3 cut(s)	71, 100, 192
BmiI	GGNNCC	3 cut(s)	73, 101, 194
BmrFI	CCNGG	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	22
Bpu10I	CCTNAGC	1 cut(s)	420
BsaAI	YACGTR	1 cut(s)	106
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	231, 470
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 255
Bse118I	RCCGGY	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	2 cut(s)	231, 470
BseGI	GGATG	2 cut(s)	116, 247
BseLI	CCNNNNNNNGG	2 cut(s)	81, 255
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	4 cut(s)	167, 170, 344, 502
BseXI	GCAGC	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	48, 72, 469
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	256, 275
BslI	CCNNNNNNNGG	2 cut(s)	81, 255
BsmAI	GTCTC	1 cut(s)	338
BsnI	GGCC	3 cut(s)	48, 72, 469
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	249
BspACI	CCGC	8 cut(s)	69, 79, 187, 207, 228, 231, 233, 265
BspANI	GGCC	3 cut(s)	48, 72, 469
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	3 cut(s)	73, 101, 194
BspMI	ACCTGC	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	231, 470
BssNI	GRCGYC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	2 cut(s)	86, 208
BstACI	GRCGYC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	2 cut(s)	231, 470
BstF5I	GGATG	2 cut(s)	116, 247
BstFNI	CGCG	1 cut(s)	233
BstH2I	RGCGCY	1 cut(s)	442
BstHHI	GCGC	1 cut(s)	441
BstMAI	GTCTC	1 cut(s)	338
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 171, 385, 425
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	177
BstV2I	GAAGAC	1 cut(s)	55
BsuRI	GGCC	3 cut(s)	48, 72, 469
BtgI	CCRYGG	2 cut(s)	231, 470
BtsCI	GGATG	2 cut(s)	116, 247
BveI	ACCTGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	441
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	3 cut(s)	71, 100, 192
Cfr42I	CCGCGG	1 cut(s)	234
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	1 cut(s)	380
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	420
DriI	GACNNNNNGTC	1 cut(s)	452
EaeI	YGGCCR	2 cut(s)	46, 467
Eam1104I	CTCTTC	2 cut(s)	86, 208
Eam1105I	GACNNNNNGTC	1 cut(s)	452
EarI	CTCTTC	2 cut(s)	86, 208
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	2 cut(s)	100, 192
Eco57I	CTGAAG	1 cut(s)	49
Eco72I	CACGTG	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	1 cut(s)	383
FaiI	YATR	6 cut(s)	381, 407, 444, 450, 464, 466
FatI	CATG	1 cut(s)	379
FauI	CCCGC	1 cut(s)	235
FauNDI	CATATG	1 cut(s)	464
Fnu4HI	GCNGC	5 cut(s)	70, 166, 187, 231, 234
FokI	GGATG	2 cut(s)	103, 254
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	5 cut(s)	70, 166, 187, 231, 234
FspBI	CTAG	3 cut(s)	287, 339, 483
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	5 cut(s)	70, 166, 187, 231, 234
GsuI	CTGGAG	1 cut(s)	22
HaeII	RGCGCY	1 cut(s)	442
HaeIII	GGCC	3 cut(s)	48, 72, 469
HapII	CCGG	2 cut(s)	256, 275
HgaI	GACGC	1 cut(s)	21
HhaI	GCGC	1 cut(s)	441
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	383
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HinfI	GANTC	1 cut(s)	353
HpaII	CCGG	2 cut(s)	256, 275
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	241, 312, 402
Hpy188III	TCNNGA	2 cut(s)	18, 516
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	379, 459
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 171, 385, 425
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	383
HspAI	GCGC	1 cut(s)	439
KspI	CCGCGG	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	489
LpnPI	CCDG	7 cut(s)	13, 25, 52, 67, 175, 269, 288
Lsp1109I	GCAGC	1 cut(s)	177
MaeI	CTAG	3 cut(s)	287, 339, 483
MaeII	ACGT	1 cut(s)	105
MboII	GAAGA	5 cut(s)	55, 100, 103, 105, 195
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	306
MmeI	TCCRAC	2 cut(s)	180, 301
MseI	TTAA	1 cut(s)	396
MspA1I	CMGCKG	3 cut(s)	69, 189, 233
MspI	CCGG	2 cut(s)	256, 275
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	4 cut(s)	78, 171, 385, 425
NdeI	CATATG	1 cut(s)	464
NlaIII	CATG	1 cut(s)	383
NlaIV	GGNNCC	3 cut(s)	73, 101, 194
PaqCI	CACCTGC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	5 cut(s)	71, 167, 188, 232, 235
PmaCI	CACGTG	1 cut(s)	106
PmlI	CACGTG	1 cut(s)	106
Ppu21I	YACGTR	1 cut(s)	106
PshBI	ATTAAT	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	38
PspCI	CACGTG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	3 cut(s)	73, 101, 194
PspPI	GGNCC	3 cut(s)	71, 100, 192
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SacII	CCGCGG	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	5 cut(s)	70, 166, 187, 231, 234
Sau96I	GGNCC	3 cut(s)	71, 100, 192
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	249
Sfr303I	CCGCGG	1 cut(s)	234
SgrBI	CCGCGG	1 cut(s)	234
SinI	GGWCC	2 cut(s)	100, 192
SpeI	ACTAGT	1 cut(s)	338
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	8 cut(s)	69, 79, 187, 207, 228, 231, 233, 265
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	3 cut(s)	287, 339, 483
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	17
TasI	AATT	1 cut(s)	306
TauI	GCSGC	4 cut(s)	72, 189, 233, 236
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	3 cut(s)	105, 366, 422
VpaK11BI	GGWCC	2 cut(s)	100, 192
VspI	ATTAAT	1 cut(s)	396
XspI	CTAG	3 cut(s)	287, 339, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.