pycom11g20060

psbQ-like protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0014562
Physical Location & Seq
Forward (+)
22597895 .. 22598716
822 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 663 bp
ATGTCTCGCCTGGCAAACTTAAAGGGAGTCTCCGAAACACTGCCGGTCATTCCAAGGTTTCCGAGCTTACAAACAACCCAAAAGAAAGCGAGCATTATTTGCTTTATGAGCAAGAAAAGTGAAGGTTTGCAGGAACAGCCACTACAAACTACAAGAAGACTTGCATTAGGCCTTGCCTCTATTGCACTTGTTGGAAACTGCTGCAATGGTGTCTCTCTTGCTGAGGGCAACGGGTTCTGGCTCGACGACCCTCTGCCTGTGCCTTCTGCTGAAAACAAAATTGCAAATGAGAAGACCGGAACGCGATCTTTTCTGAAAAGGGGACTCTACATGGCAAATATTGGAACGAAAGGGAGGAAGTTCAGGCTTAAGAAATATGCTTTTGATCTTCTGGCAATGGCGGATTTGATTGCAAAAGATACATTAAACTATGTTCGAAGGTATCTGCGGCTAAAATCCACATTCATGTACTTTGATTTCGATCGAGTAATCTCTGCAGCTCCAGTGGATGAGAAACAGCCCCTTACTGATCTTGCTAACAGATTATTTGACACGGTCGAAAAGCTTGATGGTGCCGCGAAGCAGCGCGACCTGCTTCAGACAGAAACATACTATAAAGACACAACAGTTATTCTCCAAGAGGTCATGGATCGAATGGCGTGA

Protein Analysis

221

Amino Acids

24.74

Weight (kDa)

9.47

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 1 - 220 4e-53 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014562)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01440
fragaria_vesca FvH4_3g21690
malus_domestica MD03G1212800.v1.1 MD11G1227900.v1.1
prunus_persica Prupe.4G201300_v2.0.a1
pyrus_communis pycom03g16160 pycom11g20060
rosa_chinensis RchiOBHm_Chr5g0037191
rosa_laevigata RLG00000033755
rosa_multiflora Rmu_co8022472.1_g000001
rosa_roxburghii Rroxscaffold_1G00043790
rosa_rugosa Rorug05G0161500
rosa_samantha Rh5AG253100 Rh5BG255000 Rh5CG287700 Rh5DG263500
rosa_wichuraiana Rw5G023380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 600
AccB1I GGYRCC 1 cut(s) 572
AccII CGCG 3 cut(s) 304, 578, 588
AciI CCGC 3 cut(s) 401, 448, 576
AclWI GGATC 1 cut(s) 657
AcuI CTGAAG 1 cut(s) 581
AfaI GTAC 1 cut(s) 470
AflII CTTAAG 1 cut(s) 368
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 3 cut(s) 66, 500, 565
AluI AGCT 3 cut(s) 66, 500, 565
Alw26I GTCTC 3 cut(s) 9, 34, 217
AlwI GGATC 1 cut(s) 657
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 3 cut(s) 201, 497, 583
AspLEI GCGC 1 cut(s) 588
AsuII TTCGAA 1 cut(s) 436
BanI GGYRCC 1 cut(s) 572
BbsI GAAGAC 2 cut(s) 163, 299
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 3 cut(s) 188, 509, 595
BccI CCATC 1 cut(s) 563
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 3 cut(s) 9, 34, 217
BfmI CTRYAG 1 cut(s) 495
BfrI CTTAAG 1 cut(s) 368
BfuAI ACCTGC 1 cut(s) 600
BisI GCNGC 5 cut(s) 202, 449, 498, 576, 584
BlsI GCNGC 5 cut(s) 203, 450, 499, 577, 585
Bme1390I CCNGG 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 574
BmrFI CCNGG 1 cut(s) 11
BpiI GAAGAC 2 cut(s) 163, 299
BpmI CTGGAG 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 436
BsaBI GATNNNNATC 1 cut(s) 480
BsaJI CCNNGG 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 503
Bse3DI GCAATG 2 cut(s) 211, 402
Bse8I GATNNNNATC 1 cut(s) 480
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 514
BseJI GATNNNNATC 1 cut(s) 480
BseMI GCAATG 2 cut(s) 211, 402
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 503
BseXI GCAGC 3 cut(s) 188, 509, 595
Bsh1236I CGCG 3 cut(s) 304, 578, 588
Bsh1285I CGRYCG 2 cut(s) 484, 558
BshFI GGCC 1 cut(s) 171
BshNI GGYRCC 1 cut(s) 572
BsiEI CGRYCG 2 cut(s) 484, 558
BsiSI CCGG 2 cut(s) 44, 297
BslFI GGGAC 1 cut(s) 336
BsmAI GTCTC 3 cut(s) 9, 34, 217
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 1 cut(s) 171
Bsp119I TTCGAA 1 cut(s) 436
Bsp143I GATC 5 cut(s) 305, 385, 481, 529, 649
BspACI CCGC 3 cut(s) 401, 448, 576
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 1 cut(s) 214
BspFNI CGCG 3 cut(s) 304, 578, 588
BspLI GGNNCC 1 cut(s) 574
BspMAI CTGCAG 1 cut(s) 499
BspMI ACCTGC 1 cut(s) 600
BspPI GGATC 1 cut(s) 657
BspT104I TTCGAA 1 cut(s) 436
BspT107I GGYRCC 1 cut(s) 572
BspTI CTTAAG 1 cut(s) 368
BsrDI GCAATG 2 cut(s) 211, 402
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 1 cut(s) 503
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 5 cut(s) 305, 385, 481, 529, 649
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 556, 628
BstAFI CTTAAG 1 cut(s) 368
BstAPI GCANNNNNTGC 1 cut(s) 99
BstBI TTCGAA 1 cut(s) 436
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 514
BstFNI CGCG 3 cut(s) 304, 578, 588
BstHHI GCGC 1 cut(s) 588
BstKTI GATC 5 cut(s) 308, 388, 484, 532, 652
BstMAI GTCTC 3 cut(s) 9, 34, 217
BstMBI GATC 5 cut(s) 305, 385, 481, 529, 649
BstMCI CGRYCG 2 cut(s) 484, 558
BstMWI GCNNNNNNNGC 5 cut(s) 99, 108, 136, 182, 592
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 3 cut(s) 304, 578, 588
BstV1I GCAGC 3 cut(s) 188, 509, 595
BstV2I GAAGAC 2 cut(s) 163, 299
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 1 cut(s) 514
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 2 cut(s) 38, 510
BveI ACCTGC 1 cut(s) 600
Cac8I GCNNGC 1 cut(s) 91
CfoI GCGC 1 cut(s) 588
Cfr10I RCCGGY 1 cut(s) 43
Csp6I GTAC 1 cut(s) 469
CviAII CATG 3 cut(s) 331, 466, 646
CviJI RGCY 9 cut(s) 66, 139, 171, 241, 367, 451, 500, 520, 565
CviKI_1 RGCY 9 cut(s) 66, 139, 171, 241, 367, 451, 500, 520, 565
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 1 cut(s) 222
DpnI GATC 5 cut(s) 307, 387, 483, 531, 651
DpnII GATC 5 cut(s) 305, 385, 481, 529, 649
EciI GGCGGA 1 cut(s) 416
Eco130I CCWWGG 1 cut(s) 53
Eco147I AGGCCT 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 581
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 3 cut(s) 334, 469, 649
FaiI YATR 8 cut(s) 107, 332, 378, 432, 467, 610, 615, 647
FaqI GGGAC 1 cut(s) 336
FatI CATG 3 cut(s) 330, 465, 645
Fnu4HI GCNGC 5 cut(s) 202, 449, 498, 576, 584
FokI GGATG 1 cut(s) 521
Fsp4HI GCNGC 5 cut(s) 202, 449, 498, 576, 584
GlaI GCGC 1 cut(s) 587
GluI GCNGC 5 cut(s) 202, 449, 498, 576, 584
GsuI CTGGAG 1 cut(s) 486
HaeIII GGCC 1 cut(s) 171
HapII CCGG 2 cut(s) 44, 297
HhaI GCGC 1 cut(s) 588
Hin1II CATG 3 cut(s) 334, 469, 649
Hin6I GCGC 1 cut(s) 586
HinP1I GCGC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 2 cut(s) 27, 324
HpaII CCGG 2 cut(s) 44, 297
Hpy188I TCNGA 4 cut(s) 34, 63, 315, 600
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 116, 273, 432
HpyCH4III ACNGT 2 cut(s) 556, 628
HpyCH4V TGCA 7 cut(s) 130, 164, 185, 204, 284, 413, 497
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 108, 136, 182, 592
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 3 cut(s) 334, 469, 649
HspAI GCGC 1 cut(s) 586
Kzo9I GATC 5 cut(s) 305, 385, 481, 529, 649
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 3 cut(s) 188, 509, 595
MalI GATC 5 cut(s) 307, 387, 483, 531, 651
MboI GATC 5 cut(s) 305, 385, 481, 529, 649
MboII GAAGA 3 cut(s) 168, 304, 380
MluCI AATT 1 cut(s) 279
MlyI GAGTC 2 cut(s) 36, 318
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 5 cut(s) 187, 217, 261, 348, 634
MseI TTAA 3 cut(s) 20, 369, 425
MslI CAYNNNNRTG 1 cut(s) 464
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 2 cut(s) 44, 297
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MvnI CGCG 3 cut(s) 304, 578, 588
MwoI GCNNNNNNNGC 5 cut(s) 99, 108, 136, 182, 592
NdeII GATC 5 cut(s) 305, 385, 481, 529, 649
NlaIII CATG 3 cut(s) 334, 469, 649
NlaIV GGNNCC 1 cut(s) 574
NspV TTCGAA 1 cut(s) 436
PceI AGGCCT 1 cut(s) 171
PflFI GACNNNGTC 1 cut(s) 554
PkrI GCNGC 5 cut(s) 203, 450, 499, 577, 585
Ple19I CGATCG 1 cut(s) 484
PleI GAGTC 2 cut(s) 35, 318
PpsI GAGTC 2 cut(s) 35, 318
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 574
PsrI GAACNNNNNNTAC 2 cut(s) 126, 158
PstI CTGCAG 1 cut(s) 499
PsyI GACNNNGTC 1 cut(s) 554
PvuI CGATCG 1 cut(s) 484
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
RseI CAYNNNNRTG 1 cut(s) 464
SaqAI TTAA 3 cut(s) 20, 369, 425
SatI GCNGC 5 cut(s) 202, 449, 498, 576, 584
Sau3AI GATC 5 cut(s) 305, 385, 481, 529, 649
SchI GAGTC 2 cut(s) 36, 318
ScrFI CCNGG 1 cut(s) 11
SetI ASST 8 cut(s) 59, 68, 127, 443, 502, 567, 594, 645
SfcI CTRYAG 1 cut(s) 495
SfuI TTCGAA 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 1 cut(s) 279
SseBI AGGCCT 1 cut(s) 171
SsiI CCGC 3 cut(s) 401, 448, 576
SspI AATATT 1 cut(s) 340
StuI AGGCCT 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 556, 628
TaqI TCGA 6 cut(s) 243, 436, 480, 484, 558, 652
TasI AATT 1 cut(s) 279
TatI WGTACW 1 cut(s) 468
TauI GCSGC 2 cut(s) 451, 578
Tru1I TTAA 3 cut(s) 20, 369, 425
Tru9I TTAA 3 cut(s) 20, 369, 425
TscAI CASTG 2 cut(s) 45, 510
TseI GCWGC 3 cut(s) 201, 497, 583
TspDTI ATGAA 1 cut(s) 454
TspRI CASTG 2 cut(s) 45, 510
Tth111I GACNNNGTC 1 cut(s) 554
Vha464I CTTAAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.