Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002624

Physical Location & Seq

Genomic Coordinates Forward (+)

24654739 .. 24662278

Gene Structure 7540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2559 bp

ATGGTTCAAATTCAAAACAATTTGAAACCATTAACATGCTTTGGAATAACAAAGATTTTCCATAAGGCTACTACATTTCTAGCCTTAGAGAGAAATTTCATTCCCAATGAGCTGGAAAATGGGGTTAGATCCACCACTGGGGCTACCCCAAAAAACAGTGGGTCCCACAAAAAAAGTAGCAACCCATGTGAGCAAAATTCTATCAATCTCCCTCCACTTGCGAATATACTTATACTCTCCTTTTATTATTATTATTTTAATTCTTTTTTCTTACTTATTTGTCTTGCAATTTGGCCAATTAATGATTGGGTGAAATTTTCAAATAATTATTTTTCAAAATTGTATGATCCTAATTTACCCATTGGTGTTGGGTCAATTGTTGTGTTATACATGAAAATCAAATTATTTCAGAGGGTAGTGGGGGTTTGTTTATTTCAACGGATGATGTGTCATAATTTGAACTTTTTAGAAAAGCTAACACAAGATTCTTTTATAAGGCCCCAAAGATTCCTCGGAGTTCTAAAATGGGCTATATCCACCACTTTTCTAGCCTCATATAGAGCACCTCACTGGGGATGCTCTAAGGGTATTTGTATTTGTCTTGTGCATTTGAAGAAAATGATTTTTCCTTCTAAAATCAAGCATTTGGCCTGGTTCCCAGGATATCATCCCCCATCTCCCGAAACTCCCTTGGCTTGTTCTGCATCAACCAAACTTAAGACATCTGTTAAAGAACCTACAAATCAACAAGCAAAACTGCTTGAAATTCAGTCCATTTGCAAAGTGAATAAAATTACGAGAATGCCGTTTTGTCCAAAGAAAGAAGCGCGTAGGACGCGGAATTTTGAAATCGCGTGTTACTCTCGTACTGTCATGCTAAACGCCTTCCACAAAGAGAAAGAAAGCCTAAATTTTGAAAGAGAAAGAAAGAGGGCTTTCTCTCTCTCTCTCTCTCTCTCTCTACTCTTTCTCATCCTATATTCTCGTCGCTCCATCTTCTCCAGGTGGTTATTGGTCCTTTTAGTAGTTGTGGATGCAAACTGGGGTTGCTCATATGTTACAATGCAAGCACTTAACACACCTGCTGCAAGCTGTGATGACAAGAGAAGGGACTTGGAGTATTTGCTTGAAGCATTTAGCTCAATGGTTTCTCTCAAGGACATAGCCTCCGCATACTGCCAGGCGAAGTGCAATGTAGAAATGGCCGGTGAAATTCTTTGCAGATCACATTTAACTTCCTCAAACGGTGCTAGTTCCTCAAAAGTTAAGCTTGAGGGTGCAAGCACAACTTCTTTGGAAGGCCTGGAATCTGGACGGGATGTTGCAAGTGCAGTTCATGCAGATGTGTCAACCATCAAAAGTATTCAGAATCCCTTCAATGGAATGGACAACACCAGAACATTGAAGTCAAAAAAACTTTCTGCTTCAGTGGGCACTGTTTCAGGGATGATTGGAAAGGAGTACAGTAGACCCAGAGCATCAACAATTGTATATACTGAAGTGAAGAAACCATTAAAACTAGATTGGAAAGAAGTGCCTGCCTCTGCGATATGGAGTGAAGAAGTCCAATCAACCACGCCACCAACAAACAGCAAACTGCATGCTGATGCTGAAGAATTTCTGTGTAAAATGCTTGGAGAGGGCTTTAAACTTGATATGAACGTGATCCGAGAAGTTCTTGGCCTTTGTGGATATGATGTGCAGAAGAGCGTGGAGAATCTTCTTTTCATATCAGCATCAACGTTGGAGAAGTCCGATGATGTTGTCGGCTTAGCTGGTTTGAAGTCTGCAGAGAAGCGTCCGGATCAACATTCTGCCCATAGTGATTTATCTGAATCACCGGTAGGAGAAGGAGATGGGCTTCTTTGCCAACAGGTTTTACAAGCGTTGTTTCATGTTCCTGAAAGAACTGACGAAGCACCTAAAAGAAGTCTCCCATCGAGGGAAGTGAAAAGATATAAATATAAGGGACTTAAGGGATACGTGGTTAAACCATTTATAGACACGGTTGTAGAATGTAAAGCTACTGTAGCACTAGCACCACAAGGAGTTTCCGGGGCAGATGGAGATGATGATAATAGCTATGAGGTCCTACGTAAATCTGTGAAAGAATACTGGATCACAATGAAGGAATACTATAAAGCTGCTTTTAATGCATTTTGTGAGGGTGATCGTGCACATTCAGACAAACTGCTAGAGAAGGGACATTATTTTAACAAAAAGGCACGGGAAGCAGATGAAAAATCTGCTCAAATGCTTATTCAAGCTCAGAGTAGTGAGGATGATGTGTCTCTTGACTTGCATAACCACGAGCCCAAGGAAGCTATACGTCTTCTAAGATCTCAGTTAACCTATCTCTCTGGCATCCCAGCTTTCAAGTATCTTCGGGTCATAGTGGGATCGAATGATGAAGATACAACAGGAGGGGCCCGGAGACGACTGATTGTGAAGCAACTGGAGAAGGAATCGATCAAATGGACCGAGGAGGAGAACGGGAGGACAATATCGATCCAAGTGGATGAAATTGACCCGAAAAGTTTGAGCTTCTCAAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771

Protein Analysis

853

Amino Acids

95.77

Weight (kDa)

9.03

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_At5g58720	PF24767	367 - 408	5e-10	At5g58720 UBA-like domain
DUF1771	PF08590	695 - 756	1e-10	Domain of unknown function (DUF1771)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15390 AT3G15390 AT3G15390
fragaria_vesca	FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430
malus_domestica	MD00G1089400.v1.1
prunus_persica	Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1
pyrus_communis	pycom11g21510
rosa_chinensis	RchiOBHm_Chr5g0034321
rosa_laevigata	RLG00000033540
rosa_multiflora	Rmu_sc0000062.1_g000019
rosa_roxburghii	Rroxscaffold_1G00045920 Rroxscaffold_1G00045950
rosa_rugosa	Rorug05G0145300 Rorug05G0145300
rosa_samantha	Rh5AG236900 Rh5BG237400 Rh5CG267200 Rh5DG244900
rosa_wichuraiana	Rw0G022190 Rw5G021270 Rw5G021660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
AarI	CACCTGC	1 cut(s)	1090
Acc36I	ACCTGC	1 cut(s)	1090
AccI	GTMKAC	1 cut(s)	1468
AccII	CGCG	3 cut(s)	829, 838, 854
AccIII	TCCGGA	1 cut(s)	1801
AciI	CCGC	2 cut(s)	838, 1170
AclI	AACGTT	1 cut(s)	1742
AclWI	GGATC	7 cut(s)	123, 341, 1660, 1812, 2126, 2407, 2503
AcoI	YGGCCR	2 cut(s)	293, 1203
AcsI	RAATTY	9 cut(s)	9, 94, 196, 314, 765, 841, 910, 1212, 1616
AcuI	CTGAAG	3 cut(s)	1410, 1518, 1632
AfaI	GTAC	2 cut(s)	868, 1463
AfiI	CCNNNNNNNGG	4 cut(s)	138, 572, 1379, 1942
AflII	CTTAAG	2 cut(s)	716, 1973
AgeI	ACCGGT	1 cut(s)	1840
AjnI	CCWGG	5 cut(s)	650, 658, 1001, 1179, 1302
Alw21I	GWGCWC	2 cut(s)	565, 2179
Alw26I	GTCTC	3 cut(s)	1937, 2295, 2428
Alw44I	GTGCAC	1 cut(s)	2175
AlwI	GGATC	7 cut(s)	123, 341, 1660, 1812, 2126, 2407, 2503
Aor13HI	TCCGGA	1 cut(s)	1801
AoxI	GGCC	7 cut(s)	293, 497, 648, 1203, 1300, 1681, 2427
ApaI	GGGCCC	1 cut(s)	2431
ApaLI	GTGCAC	1 cut(s)	2175
ApeKI	GCWGC	2 cut(s)	1085, 2144
ApoI	RAATTY	9 cut(s)	9, 94, 196, 314, 765, 841, 910, 1212, 1616
AseI	ATTAAT	1 cut(s)	300
AsiGI	ACCGGT	1 cut(s)	1840
Asp700I	GAANNNNTTC	2 cut(s)	1373, 1617
AspLEI	GCGC	1 cut(s)	829
AspS9I	GGNCC	7 cut(s)	162, 498, 1015, 2089, 2427, 2428, 2478
AsuC2I	CCSGG	2 cut(s)	2056, 2431
AsuHPI	GGTGA	4 cut(s)	322, 1220, 1830, 2180
AvaII	GGWCC	4 cut(s)	162, 1015, 2089, 2478
BaeGI	GKGCMC	3 cut(s)	1436, 2179, 2431
BalI	TGGCCA	1 cut(s)	295
BanII	GRGCYC	2 cut(s)	2316, 2431
BauI	CACGAG	1 cut(s)	2309
BbsI	GAAGAC	1 cut(s)	2324
Bbv12I	GWGCWC	2 cut(s)	565, 2179
BbvI	GCAGC	2 cut(s)	1072, 2131
BccI	CCATC	6 cut(s)	682, 1001, 1361, 1850, 1945, 2057
BceAI	ACGGC	1 cut(s)	790
BciT130I	CCWGG	5 cut(s)	652, 660, 1003, 1181, 1304
BciVI	GTATCC	1 cut(s)	1973
BcnI	CCSGG	2 cut(s)	2056, 2431
BcoDI	GTCTC	3 cut(s)	1937, 2295, 2428
BfaI	CTAG	6 cut(s)	80, 548, 1251, 1520, 2036, 2195
BfmI	CTRYAG	2 cut(s)	1788, 2028
BfrI	CTTAAG	2 cut(s)	716, 1973
BfuAI	ACCTGC	1 cut(s)	1090
BfuI	GTATCC	1 cut(s)	1973
BglII	AGATCT	1 cut(s)	2339
BisI	GCNGC	2 cut(s)	1086, 2145
BlpI	GCTNAGC	1 cut(s)	1771
BlsI	GCNGC	2 cut(s)	1087, 2146
Bme1390I	CCNGG	7 cut(s)	652, 660, 1003, 1181, 1304, 2056, 2431
Bme18I	GGWCC	4 cut(s)	162, 1015, 2089, 2478
BmgT120I	GGNCC	7 cut(s)	162, 498, 1015, 2089, 2427, 2428, 2478
BmiI	GGNNCC	6 cut(s)	163, 164, 500, 656, 2428, 2429
BmrFI	CCNGG	7 cut(s)	652, 660, 1003, 1181, 1304, 2056, 2431
BmrI	ACTGGG	3 cut(s)	147, 580, 1051
BmsI	GCATC	7 cut(s)	566, 713, 1024, 1487, 1597, 1745, 2373
BmuI	ACTGGG	3 cut(s)	147, 580, 1051
BpiI	GAAGAC	1 cut(s)	2324
BpmI	CTGGAG	2 cut(s)	985, 2477
Bpu1102I	GCTNAGC	1 cut(s)	1771
BpuEI	CTTGAG	2 cut(s)	1139, 1292
BpuMI	CCSGG	2 cut(s)	2056, 2431
Bsa29I	ATCGAT	2 cut(s)	2468, 2507
BsaAI	YACGTR	2 cut(s)	1984, 2096
BsaJI	CCNNGG	6 cut(s)	511, 658, 690, 2055, 2316, 2481
BsaWI	WCCGGW	2 cut(s)	1801, 1840
BsaXI	ACNNNNNCTCC	2 cut(s)	1151, 1181
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 572, 1379, 1942
Bse118I	RCCGGY	2 cut(s)	1205, 1840
Bse1I	ACTGG	5 cut(s)	142, 575, 1046, 2120, 2460
Bse3DI	GCAATG	1 cut(s)	1198
BseAI	TCCGGA	1 cut(s)	1801
BseBI	CCWGG	5 cut(s)	652, 660, 1003, 1181, 1304
BseCI	ATCGAT	2 cut(s)	2468, 2507
BseDI	CCNNGG	6 cut(s)	511, 658, 690, 2055, 2316, 2481
BseLI	CCNNNNNNNGG	4 cut(s)	138, 572, 1379, 1942
BseMI	GCAATG	1 cut(s)	1198
BseMII	CTCAG	2 cut(s)	2282, 2357
BseNI	ACTGG	5 cut(s)	142, 575, 1046, 2120, 2460
BseRI	GAGGAG	2 cut(s)	2498, 2501
BseSI	GKGCMC	3 cut(s)	1436, 2179, 2431
BseXI	GCAGC	2 cut(s)	1072, 2131
BseYI	CCCAGC	1 cut(s)	2368
BsgI	GTGCAG	2 cut(s)	1350, 1721
Bsh1236I	CGCG	3 cut(s)	829, 838, 854
BshFI	GGCC	7 cut(s)	295, 499, 650, 1205, 1302, 1683, 2429
BshTI	ACCGGT	1 cut(s)	1840
BshVI	ATCGAT	2 cut(s)	2468, 2507
BsiHKAI	GWGCWC	2 cut(s)	565, 2179
BsiSI	CCGG	5 cut(s)	1206, 1802, 1841, 2055, 2431
BslFI	GGGAC	4 cut(s)	148, 1124, 1983, 2217
BslI	CCNNNNNNNGG	4 cut(s)	138, 572, 1379, 1942
BsmAI	GTCTC	3 cut(s)	1937, 2295, 2428
BsmBI	CGTCTC	1 cut(s)	2428
BsmFI	GGGAC	4 cut(s)	148, 1124, 1983, 2217
BsmI	GAATGC	1 cut(s)	807
BsnI	GGCC	7 cut(s)	295, 499, 650, 1205, 1302, 1683, 2429
Bsp120I	GGGCCC	1 cut(s)	2427
Bsp1286I	GDGCHC	5 cut(s)	565, 1436, 2179, 2316, 2431
Bsp13I	TCCGGA	1 cut(s)	1801
Bsp1720I	GCTNAGC	1 cut(s)	1771
BspACI	CCGC	2 cut(s)	838, 1170
BspANI	GGCC	7 cut(s)	295, 499, 650, 1205, 1302, 1683, 2429
BspCNI	CTCAG	2 cut(s)	2281, 2356
BspDI	ATCGAT	2 cut(s)	2468, 2507
BspEI	TCCGGA	1 cut(s)	1801
BspFNI	CGCG	3 cut(s)	829, 838, 854
BspLI	GGNNCC	6 cut(s)	163, 164, 500, 656, 2428, 2429
BspMAI	CTGCAG	1 cut(s)	1792
BspMI	ACCTGC	1 cut(s)	1090
BspPI	GGATC	7 cut(s)	123, 341, 1660, 1812, 2126, 2407, 2503
BspQI	GCTCTTC	1 cut(s)	1700
BspTI	CTTAAG	2 cut(s)	716, 1973
BsrDI	GCAATG	1 cut(s)	1198
BsrFI	RCCGGY	2 cut(s)	1205, 1840
BsrI	ACTGG	5 cut(s)	142, 575, 1046, 2120, 2460
BssAI	RCCGGY	2 cut(s)	1205, 1840
BssECI	CCNNGG	6 cut(s)	511, 658, 690, 2055, 2316, 2481
BssSI	CACGAG	1 cut(s)	2309
BssT1I	CCWWGG	2 cut(s)	690, 2316
Bst2BI	CACGAG	1 cut(s)	2309
Bst2UI	CCWGG	5 cut(s)	652, 660, 1003, 1181, 1304
Bst4CI	ACNGT	7 cut(s)	158, 871, 1247, 1438, 1466, 2008, 2029
Bst6I	CTCTTC	1 cut(s)	1700
BstAFI	CTTAAG	2 cut(s)	716, 1973
BstAPI	GCANNNNNTGC	1 cut(s)	1337
BstBAI	YACGTR	2 cut(s)	1984, 2096
BstC8I	GCNNGC	5 cut(s)	1068, 1090, 1282, 1539, 1602
BstDEI	CTNAG	6 cut(s)	85, 582, 1771, 2268, 2336, 2343
BstFNI	CGCG	3 cut(s)	829, 838, 854
BstHHI	GCGC	1 cut(s)	829
BstMAI	GTCTC	3 cut(s)	1937, 2295, 2428
BstMWI	GCNNNNNNNGC	6 cut(s)	701, 835, 1337, 2030, 2153, 2231
BstNI	CCWGG	5 cut(s)	652, 660, 1003, 1181, 1304
BstNSI	RCATGY	2 cut(s)	39, 1604
BstSCI	CCNGG	7 cut(s)	650, 658, 1001, 1179, 1302, 2054, 2429
BstSFI	CTRYAG	2 cut(s)	1788, 2028
BstSLI	GKGCMC	3 cut(s)	1436, 2179, 2431
BstSNI	TACGTA	1 cut(s)	2096
BstUI	CGCG	3 cut(s)	829, 838, 854
BstV1I	GCAGC	2 cut(s)	1072, 2131
BstV2I	GAAGAC	1 cut(s)	2324
BstX2I	RGATCY	2 cut(s)	128, 2339
BstXI	CCANNNNNNTGG	1 cut(s)	112
BstYI	RGATCY	2 cut(s)	128, 2339
Bsu15I	ATCGAT	2 cut(s)	2468, 2507
BsuI	GTATCC	1 cut(s)	1973
BsuRI	GGCC	7 cut(s)	295, 499, 650, 1205, 1302, 1683, 2429
BsuTUI	ATCGAT	2 cut(s)	2468, 2507
BtsIMutI	CAGTG	5 cut(s)	135, 163, 568, 1434, 1434
BveI	ACCTGC	1 cut(s)	1090
Cac8I	GCNNGC	5 cut(s)	1068, 1090, 1282, 1539, 1602
CfoI	GCGC	1 cut(s)	829
Cfr10I	RCCGGY	2 cut(s)	1205, 1840
Cfr13I	GGNCC	7 cut(s)	162, 498, 1015, 2089, 2427, 2428, 2478
ClaI	ATCGAT	2 cut(s)	2468, 2507
CseI	GACGC	2 cut(s)	844, 1787
Csp6I	GTAC	2 cut(s)	867, 1462
CspAI	ACCGGT	1 cut(s)	1840
CviAII	CATG	7 cut(s)	36, 186, 391, 874, 1337, 1601, 1895
CviQI	GTAC	2 cut(s)	867, 1462
DdeI	CTNAG	6 cut(s)	85, 582, 1771, 2268, 2336, 2343
DraI	TTTAAA	1 cut(s)	1648
EaeI	YGGCCR	2 cut(s)	293, 1203
Eam1104I	CTCTTC	1 cut(s)	1700
EarI	CTCTTC	1 cut(s)	1700
Eco105I	TACGTA	1 cut(s)	2096
Eco130I	CCWWGG	2 cut(s)	690, 2316
Eco147I	AGGCCT	1 cut(s)	1302
Eco24I	GRGCYC	2 cut(s)	2316, 2431
Eco32I	GATATC	1 cut(s)	665
Eco47I	GGWCC	4 cut(s)	162, 1015, 2089, 2478
Eco57I	CTGAAG	3 cut(s)	1410, 1518, 1632
EcoO109I	RGGNCCY	4 cut(s)	162, 498, 2089, 2427
EcoRII	CCWGG	5 cut(s)	650, 658, 1001, 1179, 1302
EcoRV	GATATC	1 cut(s)	665
EcoT14I	CCWWGG	2 cut(s)	690, 2316
EcoT22I	ATGCAT	1 cut(s)	2158
EcoT38I	GRGCYC	2 cut(s)	2316, 2431
ErhI	CCWWGG	2 cut(s)	690, 2316
Esp3I	CGTCTC	1 cut(s)	2428
FaeI	CATG	7 cut(s)	39, 189, 394, 877, 1340, 1604, 1898
FalI	AAGNNNNNCTT	4 cut(s)	1254, 1286, 1273, 1305
FaqI	GGGAC	4 cut(s)	148, 1124, 1983, 2217
FatI	CATG	7 cut(s)	35, 185, 390, 873, 1336, 1600, 1894
FauNDI	CATATG	1 cut(s)	1054
FblI	GTMKAC	1 cut(s)	1468
Fnu4HI	GCNGC	2 cut(s)	1086, 2145
FriOI	GRGCYC	2 cut(s)	2316, 2431
Fsp4HI	GCNGC	2 cut(s)	1086, 2145
FspBI	CTAG	6 cut(s)	80, 548, 1251, 1520, 2036, 2195
GlaI	GCGC	1 cut(s)	828
GluI	GCNGC	2 cut(s)	1086, 2145
GsaI	CCCAGC	1 cut(s)	2372
GsuI	CTGGAG	2 cut(s)	985, 2477
HaeIII	GGCC	7 cut(s)	295, 499, 650, 1205, 1302, 1683, 2429
HapII	CCGG	5 cut(s)	1206, 1802, 1841, 2055, 2431
HgaI	GACGC	2 cut(s)	844, 1787
HhaI	GCGC	1 cut(s)	829
Hin1II	CATG	7 cut(s)	39, 189, 394, 877, 1340, 1604, 1898
Hin6I	GCGC	1 cut(s)	827
HinP1I	GCGC	1 cut(s)	827
HincII	GTYRAC	2 cut(s)	1350, 2349
HindII	GTYRAC	2 cut(s)	1350, 2349
HindIII	AAGCTT	1 cut(s)	1268
HinfI	GANTC	7 cut(s)	485, 507, 1307, 1369, 1717, 1835, 2465
HpaI	GTTAAC	1 cut(s)	2349
HpaII	CCGG	5 cut(s)	1206, 1802, 1841, 2055, 2431
HphI	GGTGA	4 cut(s)	322, 1220, 1830, 2180
Hpy166II	GTNNAC	4 cut(s)	1350, 1469, 2177, 2349
Hpy188I	TCNGA	8 cut(s)	411, 515, 1368, 1670, 1756, 1834, 2185, 2271
Hpy188III	TCNNGA	5 cut(s)	680, 1311, 1802, 1901, 2294
Hpy8I	GTNNAC	4 cut(s)	1350, 1469, 2177, 2349
Hpy99I	CGWCG	1 cut(s)	990
HpyAV	CCTTC	9 cut(s)	639, 895, 1101, 1292, 1384, 1844, 2122, 2194, 2455
HpyCH4III	ACNGT	7 cut(s)	158, 871, 1247, 1438, 1466, 2008, 2029
HpyCH4IV	ACGT	5 cut(s)	1662, 1742, 1983, 2095, 2329
HpyF10VI	GCNNNNNNNGC	6 cut(s)	701, 835, 1337, 2030, 2153, 2231
HpyF3I	CTNAG	6 cut(s)	85, 582, 1771, 2268, 2336, 2343
HpySE526I	ACGT	5 cut(s)	1662, 1742, 1983, 2095, 2329
Hsp92II	CATG	7 cut(s)	39, 189, 394, 877, 1340, 1604, 1898
HspAI	GCGC	1 cut(s)	827
KflI	GGGWCCC	1 cut(s)	162
Kpn2I	TCCGGA	1 cut(s)	1801
KspAI	GTTAAC	1 cut(s)	2349
LguI	GCTCTTC	1 cut(s)	1700
LmnI	GCTCC	1 cut(s)	995
Lsp1109I	GCAGC	2 cut(s)	1072, 2131
LweI	GCATC	7 cut(s)	566, 713, 1024, 1487, 1597, 1745, 2373
MaeI	CTAG	6 cut(s)	80, 548, 1251, 1520, 2036, 2195
MaeII	ACGT	5 cut(s)	1662, 1742, 1983, 2095, 2329
MaeIII	GTNAC	2 cut(s)	857, 1057
MfeI	CAATTG	2 cut(s)	375, 1485
MflI	RGATCY	2 cut(s)	128, 2339
MhlI	GDGCHC	5 cut(s)	565, 1436, 2179, 2316, 2431
MlsI	TGGCCA	1 cut(s)	295
MluNI	TGGCCA	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	1725
Mox20I	TGGCCA	1 cut(s)	295
Mph1103I	ATGCAT	1 cut(s)	2158
MroI	TCCGGA	1 cut(s)	1801
MroXI	GAANNNNTTC	2 cut(s)	1373, 1617
MscI	TGGCCA	1 cut(s)	295
MslI	CAYNNNNRTG	3 cut(s)	34, 1341, 1605
Msp20I	TGGCCA	1 cut(s)	295
MspCI	CTTAAG	2 cut(s)	716, 1973
MspI	CCGG	5 cut(s)	1206, 1802, 1841, 2055, 2431
MspR9I	CCNGG	7 cut(s)	652, 660, 1003, 1181, 1304, 2056, 2431
MunI	CAATTG	2 cut(s)	375, 1485
Mva1269I	GAATGC	1 cut(s)	807
MvaI	CCWGG	5 cut(s)	652, 660, 1003, 1181, 1304
MvnI	CGCG	3 cut(s)	829, 838, 854
MwoI	GCNNNNNNNGC	6 cut(s)	701, 835, 1337, 2030, 2153, 2231
NciI	CCSGG	2 cut(s)	2056, 2431
NdeI	CATATG	1 cut(s)	1054
NlaIII	CATG	7 cut(s)	39, 189, 394, 877, 1340, 1604, 1898
NlaIV	GGNNCC	6 cut(s)	163, 164, 500, 656, 2428, 2429
NsiI	ATGCAT	1 cut(s)	2158
NspI	RCATGY	2 cut(s)	39, 1604
PaeI	GCATGC	1 cut(s)	1604
PaqCI	CACCTGC	1 cut(s)	1090
PceI	AGGCCT	1 cut(s)	1302
PciSI	GCTCTTC	1 cut(s)	1700
PcsI	WCGNNNNNNNCGW	1 cut(s)	803
PctI	GAATGC	1 cut(s)	807
PdmI	GAANNNNTTC	2 cut(s)	1373, 1617
PfeI	GAWTC	7 cut(s)	485, 507, 1307, 1369, 1717, 1835, 2465
PinAI	ACCGGT	1 cut(s)	1840
PkrI	GCNGC	2 cut(s)	1087, 2146
Ppu21I	YACGTR	2 cut(s)	1984, 2096
PpuMI	RGGWCCY	2 cut(s)	162, 2089
PshBI	ATTAAT	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	494
Psp1406I	AACGTT	1 cut(s)	1742
Psp5II	RGGWCCY	2 cut(s)	162, 2089
Psp6I	CCWGG	5 cut(s)	650, 658, 1001, 1179, 1302
PspFI	CCCAGC	1 cut(s)	2368
PspGI	CCWGG	5 cut(s)	650, 658, 1001, 1179, 1302
PspN4I	GGNNCC	6 cut(s)	163, 164, 500, 656, 2428, 2429
PspOMI	GGGCCC	1 cut(s)	2427
PspPI	GGNCC	7 cut(s)	162, 498, 1015, 2089, 2427, 2428, 2478
PspPPI	RGGWCCY	2 cut(s)	162, 2089
PstI	CTGCAG	1 cut(s)	1792
PsuI	RGATCY	2 cut(s)	128, 2339
RsaI	GTAC	2 cut(s)	868, 1463
RsaNI	GTAC	2 cut(s)	867, 1462
RseI	CAYNNNNRTG	3 cut(s)	34, 1341, 1605
SapI	GCTCTTC	1 cut(s)	1700
SatI	GCNGC	2 cut(s)	1086, 2145
Sau96I	GGNCC	7 cut(s)	162, 498, 1015, 2089, 2427, 2428, 2478
ScrFI	CCNGG	7 cut(s)	652, 660, 1003, 1181, 1304, 2056, 2431
SduI	GDGCHC	5 cut(s)	565, 1436, 2179, 2316, 2431
SfaNI	GCATC	7 cut(s)	566, 713, 1024, 1487, 1597, 1745, 2373
SfcI	CTRYAG	2 cut(s)	1788, 2028
SinI	GGWCC	4 cut(s)	162, 1015, 2089, 2478
SmiMI	CAYNNNNRTG	3 cut(s)	34, 1341, 1605
SmlI	CTYRAG	4 cut(s)	716, 1154, 1271, 1973
SmoI	CTYRAG	4 cut(s)	716, 1154, 1271, 1973
SnaBI	TACGTA	1 cut(s)	2096
SphI	GCATGC	1 cut(s)	1604
SseBI	AGGCCT	1 cut(s)	1302
SsiI	CCGC	2 cut(s)	838, 1170
SspMI	CTAG	6 cut(s)	80, 548, 1251, 1520, 2036, 2195
StuI	AGGCCT	1 cut(s)	1302
StyD4I	CCNGG	7 cut(s)	650, 658, 1001, 1179, 1302, 2054, 2429
StyI	CCWWGG	2 cut(s)	690, 2316
TaaI	ACNGT	7 cut(s)	158, 871, 1247, 1438, 1466, 2008, 2029
TaiI	ACGT	5 cut(s)	1665, 1745, 1986, 2098, 2332
TaqI	TCGA	4 cut(s)	1940, 2402, 2468, 2507
TaqII	GACCGA	1 cut(s)	2495
TatI	WGTACW	1 cut(s)	1461
TfiI	GAWTC	7 cut(s)	485, 507, 1307, 1369, 1717, 1835, 2465
TscAI	CASTG	5 cut(s)	142, 163, 575, 1434, 1441
TseI	GCWGC	2 cut(s)	1085, 2144
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	5 cut(s)	142, 163, 575, 1434, 1441
Vha464I	CTTAAG	2 cut(s)	716, 1973
VneI	GTGCAC	1 cut(s)	2175
VpaK11BI	GGWCC	4 cut(s)	162, 1015, 2089, 2478
VspI	ATTAAT	1 cut(s)	300
XapI	RAATTY	9 cut(s)	9, 94, 196, 314, 765, 841, 910, 1212, 1616
XceI	RCATGY	2 cut(s)	39, 1604
XcmI	CCANNNNNNNNNTGG	2 cut(s)	303, 1009
XmiI	GTMKAC	1 cut(s)	1468
XmnI	GAANNNNTTC	2 cut(s)	1373, 1617
XspI	CTAG	6 cut(s)	80, 548, 1251, 1520, 2036, 2195
Zsp2I	ATGCAT	1 cut(s)	2158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.