pycom11g23030

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015860
Physical Location & Seq
Reverse (-)
26062052 .. 26065714
3663 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
ATGGCGAACAGTAATCTTCCCCGACGAATCATCAAGGAAACTCAACGTCTCCTCAGTGAACCTGCTCCGGGAATTAGTGCTTCACCGTCAGAAGACAATATGCGATATTTCAATGTGATGATCCTTGGCCCGACACAATCTCCTTATGAAGGAGGAGTTTTCAAGTTGGAACTCTTTTTGCCTGAAGAATATCCAATGGCTGCTCCAAAGGTTCGATTTCTCACCAAAATTTATCATCCTAACATTGACAAGCTGGGAAGGATATGCCTAGATATTTTGAAAGATAAGTGGAGTCCTGCTCTCCAGATTCGAACTGTACTTTTGAGTATTCAGGCACTTTTGAGTGCCCCAAACCCCGATGATCCACTCTCAGAGAACATCGCAAAGCATTGGAAATCAAATGAGGCCGAAGCTGTTGAAACAGGTGTGTTGAAAGCTCGCTTGTCTTACCACTGGTTTCCCCCAGCTTACCTATTATTTGAATGTCAATCAACAACGTTGAAGCTAATGCATTCTTCCTTGATCCGTGCAGCCAAGGAATGGACCCGTTTATATGCAAGCGGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 ko04624 map04120 map04624
Pfam Domains
Protein Families
UQ_con

Protein Analysis

190

Amino Acids

21.39

Weight (kDa)

8.83

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 9 - 138 1.4e-49 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78870
fragaria_vesca FvH4_3g18500
malus_domestica MD03G1241600.v1.1 MD11G1260900.v1.1
prunus_persica Prupe.4G167300_v2.0.a1 Prupe.4G167300_v2.0.a1 Prupe.4G167300_v2.0.a1
pyrus_communis pycom03g18840 pycom11g23030
rosa_chinensis RchiOBHm_Chr5g0031261
rosa_laevigata RLG00000033295
rosa_roxburghii Rroxscaffold_1G00049030
rosa_rugosa Rorug05G0123300
rosa_samantha Rh5CG240000
rosa_wichuraiana Rw5G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 70
AccB7I CCANNNNNTGG 1 cut(s) 540
AciI CCGC 1 cut(s) 561
AclI AACGTT 1 cut(s) 497
AclWI GGATC 3 cut(s) 115, 356, 517
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 3 cut(s) 68, 149, 540
AgsI TTSAA 7 cut(s) 112, 163, 280, 419, 433, 482, 502
AluBI AGCT 5 cut(s) 253, 413, 437, 467, 505
AluI AGCT 5 cut(s) 253, 413, 437, 467, 505
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 3 cut(s) 115, 356, 517
AoxI GGCC 2 cut(s) 127, 405
ApeKI GCWGC 2 cut(s) 200, 530
ApoI RAATTY 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 128, 543
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 2 cut(s) 75, 214
AsuII TTCGAA 1 cut(s) 310
AvaII GGWCC 1 cut(s) 543
BaeGI GKGCMC 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 187, 542
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 269
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 2 cut(s) 201, 531
BlsI GCNGC 2 cut(s) 202, 532
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 543
BmgT120I GGNCC 2 cut(s) 128, 543
BmiI GGNNCC 1 cut(s) 545
BmrFI CCNGG 1 cut(s) 69
BpiI GAAGAC 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 283, 315
BpmI CTGGAG 1 cut(s) 287
Bpu14I TTCGAA 1 cut(s) 310
BpuMI CCSGG 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 124, 534
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 149, 540
Bse1I ACTGG 1 cut(s) 458
BseDI CCNNGG 2 cut(s) 124, 534
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 3 cut(s) 68, 149, 540
BseMII CTCAG 2 cut(s) 67, 384
BseNI ACTGG 1 cut(s) 458
BseRI GAGGAG 2 cut(s) 41, 168
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 2 cut(s) 187, 542
BseYI CCCAGC 2 cut(s) 253, 463
BsgI GTGCAG 1 cut(s) 549
BshFI GGCC 2 cut(s) 129, 407
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 3 cut(s) 68, 149, 540
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 2 cut(s) 129, 407
Bsp119I TTCGAA 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 3 cut(s) 120, 361, 522
BspACI CCGC 1 cut(s) 561
BspANI GGCC 2 cut(s) 129, 407
BspCNI CTCAG 2 cut(s) 66, 383
BspLI GGNNCC 1 cut(s) 545
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 3 cut(s) 115, 356, 517
BspT104I TTCGAA 1 cut(s) 310
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 2 cut(s) 124, 534
BssMI GATC 3 cut(s) 120, 361, 522
BssT1I CCWWGG 2 cut(s) 124, 534
Bst4CI ACNGT 3 cut(s) 11, 87, 316
BstBI TTCGAA 1 cut(s) 310
BstC8I GCNNGC 2 cut(s) 439, 559
BstDEI CTNAG 2 cut(s) 53, 370
BstENI CCTNNNNNAGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 3 cut(s) 123, 364, 525
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 3 cut(s) 120, 361, 522
BstSCI CCNGG 1 cut(s) 67
BstSLI GKGCMC 1 cut(s) 349
BstV1I GCAGC 2 cut(s) 187, 542
BstV2I GAAGAC 1 cut(s) 99
BsuRI GGCC 2 cut(s) 129, 407
BtgZI GCGATG 1 cut(s) 364
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 61, 451
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 439, 559
Cfr13I GGNCC 2 cut(s) 128, 543
Csp6I GTAC 1 cut(s) 317
CviJI RGCY 9 cut(s) 129, 200, 253, 407, 413, 437, 467, 505, 533
CviKI_1 RGCY 9 cut(s) 129, 200, 253, 407, 413, 437, 467, 505, 533
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 2 cut(s) 53, 370
DpnI GATC 3 cut(s) 122, 363, 524
DpnII GATC 3 cut(s) 120, 361, 522
Eco130I CCWWGG 2 cut(s) 124, 534
Eco47I GGWCC 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoT14I CCWWGG 2 cut(s) 124, 534
EcoT22I ATGCAT 1 cut(s) 513
ErhI CCWWGG 2 cut(s) 124, 534
Esp3I CGTCTC 1 cut(s) 53
FaiI YATR 5 cut(s) 101, 147, 265, 553, 555
Fnu4HI GCNGC 2 cut(s) 201, 531
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 2 cut(s) 201, 531
FspBI CTAG 1 cut(s) 269
GluI GCNGC 2 cut(s) 201, 531
GsaI CCCAGC 2 cut(s) 257, 467
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 2 cut(s) 129, 407
HapII CCGG 1 cut(s) 68
HinfI GANTC 3 cut(s) 27, 292, 307
HpaII CCGG 1 cut(s) 68
HphI GGTGA 2 cut(s) 75, 214
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 91, 373
Hpy188III TCNNGA 1 cut(s) 304
Hpy8I GTNNAC 1 cut(s) 59
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 143, 252
HpyCH4III ACNGT 3 cut(s) 11, 87, 316
HpyCH4IV ACGT 2 cut(s) 46, 497
HpyCH4V TGCA 3 cut(s) 511, 530, 557
HpyF3I CTNAG 2 cut(s) 53, 370
HpySE526I ACGT 2 cut(s) 46, 497
Kzo9I GATC 3 cut(s) 120, 361, 522
LmnI GCTCC 2 cut(s) 70, 208
Lsp1109I GCAGC 2 cut(s) 187, 542
MaeI CTAG 1 cut(s) 269
MaeII ACGT 2 cut(s) 46, 497
MalI GATC 3 cut(s) 122, 363, 524
MboI GATC 3 cut(s) 120, 361, 522
MboII GAAGA 4 cut(s) 8, 104, 197, 507
MhlI GDGCHC 1 cut(s) 349
MluCI AATT 2 cut(s) 72, 228
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 3 cut(s) 62, 146, 397
Mph1103I ATGCAT 1 cut(s) 513
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 511
NciI CCSGG 1 cut(s) 69
NdeII GATC 3 cut(s) 120, 361, 522
NlaIV GGNNCC 1 cut(s) 545
NsiI ATGCAT 1 cut(s) 513
NspV TTCGAA 1 cut(s) 310
PctI GAATGC 1 cut(s) 511
PfeI GAWTC 2 cut(s) 27, 307
PflMI CCANNNNNTGG 1 cut(s) 540
PfoI TCCNGGA 1 cut(s) 67
PkrI GCNGC 2 cut(s) 202, 532
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
Psp1406I AACGTT 1 cut(s) 497
PspFI CCCAGC 2 cut(s) 253, 463
PspN4I GGNNCC 1 cut(s) 545
PspPI GGNCC 2 cut(s) 128, 543
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SatI GCNGC 2 cut(s) 201, 531
Sau3AI GATC 3 cut(s) 120, 361, 522
Sau96I GGNCC 2 cut(s) 128, 543
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 1 cut(s) 349
SfuI TTCGAA 1 cut(s) 310
SinI GGWCC 1 cut(s) 543
Sse9I AATT 2 cut(s) 72, 228
SsiI CCGC 1 cut(s) 561
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 2 cut(s) 124, 534
TaaI ACNGT 3 cut(s) 11, 87, 316
TaiI ACGT 2 cut(s) 49, 500
TaqI TCGA 2 cut(s) 214, 310
TasI AATT 2 cut(s) 72, 228
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 2 cut(s) 27, 307
TscAI CASTG 2 cut(s) 61, 458
TseI GCWGC 2 cut(s) 200, 530
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 515
TspRI CASTG 2 cut(s) 61, 458
Van91I CCANNNNNTGG 1 cut(s) 540
VpaK11BI GGWCC 1 cut(s) 543
XagI CCTNNNNNAGG 1 cut(s) 147
XapI RAATTY 1 cut(s) 228
XspI CTAG 1 cut(s) 269
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.