Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010649

Physical Location & Seq

Genomic Coordinates Forward (+)

26222532 .. 26223258

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCTCCTCACTGCTACTTCTCTCATACTCAAAGAAATACTAAAAAAAACAAAACAAAGTTATCACTCGTCACGATGTCTACCAACAAAGGAAAAGATGTAGCGGAAGGATCGTCGTCTGCTTCTGCTACTGATCATCGGCAACAGAAGCAGGCTTCGCAGCCGGCTCAACTGAGCCGGTATGAATCGCAGAAGAGGCGAGATTGGAACACTTTTGGGCAGTACTTGAGAAACCAGAGGCCTCCAGTTGCTCTCTCACAGAGCAACTCCAACCATGTTCTTGATTTCCTCAGGTACTTGGACCAATTTGGAAAGACCAAGGTGCACTTACAAGGGTGTGTGTTTTTTGGGCAGCCTGAGCCTCCTGGCCCTTGCACCTGTCCGCTAAGACAAGCTTGGGGCAGCCTCGATGCACTGATCGGACGGCTGAGAGCTGCTTATGAAGAAAATGGAGGGTTGCCAGAAACAAACCCATTTGCAACTGGAGCTATAAGAGTCTATCTGCGTGAAGTGAGGGACTCTCAAGCCAAAGCTCGGGGAATTCCGTACAAGAAGAAGAAAAAAAAGAGAAAACTAATGAAGGCAAATCTTGACAATAATCCCAACATCTCCCTGCACCAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

209

Amino Acids

23.52

Weight (kDa)

10.14

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	49 - 173	3.7e-66	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16910 AT1G78815
fragaria_vesca	FvH4_3g18340 FvH4_3g18340
malus_domestica	MD03G1242600.v1.1 MD11G1263200.v1.1
prunus_persica	Prupe.4G165300_v2.0.a1 Prupe.4G165300_v2.0.a1
pyrus_communis	pycom03g18980 pycom11g23180
rosa_chinensis	RchiOBHm_Chr5g0030991
rosa_laevigata	RLG00000033279
rosa_multiflora	Rmu_sc0001974.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049260
rosa_rugosa	Rorug05G0122100
rosa_samantha	Rh5AG215400 Rh5BG214400 Rh5CG238300 Rh5DG219000
rosa_wichuraiana	Rw5G019700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	80
AciI	CCGC	2 cut(s)	104, 383
AclWI	GGATC	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	540
AfaI	GTAC	3 cut(s)	224, 296, 548
AfiI	CCNNNNNNNGG	1 cut(s)	534
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	4 cut(s)	395, 434, 488, 533
AluI	AGCT	4 cut(s)	395, 434, 488, 533
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	1 cut(s)	9
Alw44I	GTGCAC	1 cut(s)	323
AlwI	GGATC	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	534
AoxI	GGCC	2 cut(s)	239, 367
ApaLI	GTGCAC	1 cut(s)	323
ApeKI	GCWGC	4 cut(s)	160, 352, 402, 434
ApoI	RAATTY	1 cut(s)	540
AspS9I	GGNCC	2 cut(s)	301, 368
AvaI	CYCGRG	1 cut(s)	534
AvaII	GGWCC	1 cut(s)	301
AxyI	CCTNAGG	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	4 cut(s)	172, 364, 414, 421
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	1 cut(s)	366
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	9
BisI	GCNGC	4 cut(s)	161, 353, 403, 435
BlsI	GCNGC	4 cut(s)	162, 354, 404, 436
BmcAI	AGTACT	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	534
BmgT120I	GGNCC	2 cut(s)	301, 368
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	400
BplI	GAGNNNNNCTC	2 cut(s)	505, 537
BpmI	CTGGAG	2 cut(s)	228, 504
Bpu10I	CCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	2 cut(s)	247, 507
BsaJI	CCNNGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	534
Bse118I	RCCGGY	2 cut(s)	163, 177
Bse1I	ACTGG	3 cut(s)	245, 487, 619
Bse21I	CCTNAGG	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	534
BseMII	CTCAG	4 cut(s)	164, 304, 348, 419
BseNI	ACTGG	3 cut(s)	245, 487, 619
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	4 cut(s)	172, 364, 414, 421
BsgI	GTGCAG	1 cut(s)	599
BshFI	GGCC	2 cut(s)	241, 369
BsiHKAI	GWGCWC	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	534
BsiSI	CCGG	2 cut(s)	164, 178
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	1 cut(s)	534
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	530
BsnI	GGCC	2 cut(s)	241, 369
BsoBI	CYCGRG	1 cut(s)	534
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	110, 133, 417
BspACI	CCGC	2 cut(s)	104, 383
BspANI	GGCC	2 cut(s)	241, 369
BspCNI	CTCAG	4 cut(s)	165, 303, 349, 420
BspPI	GGATC	1 cut(s)	118
BsrFI	RCCGGY	2 cut(s)	163, 177
BsrI	ACTGG	3 cut(s)	245, 487, 619
BssAI	RCCGGY	2 cut(s)	163, 177
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	3 cut(s)	110, 133, 417
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	366
Bst6I	CTCTTC	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	153, 165
BstDEI	CTNAG	5 cut(s)	173, 290, 357, 386, 428
BstKTI	GATC	3 cut(s)	113, 136, 420
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	110, 133, 417
BstMWI	GCNNNNNNNGC	5 cut(s)	148, 157, 196, 358, 485
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	364
BstSLI	GKGCMC	1 cut(s)	327
BstV1I	GCAGC	4 cut(s)	172, 364, 414, 421
Bsu36I	CCTNAGG	1 cut(s)	290
BsuRI	GGCC	2 cut(s)	241, 369
BtsI	GCAGTG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	10, 413
Cac8I	GCNNGC	2 cut(s)	153, 165
Cfr10I	RCCGGY	2 cut(s)	163, 177
Cfr13I	GGNCC	2 cut(s)	301, 368
Csp6I	GTAC	3 cut(s)	223, 295, 547
CviAII	CATG	1 cut(s)	275
CviQI	GTAC	3 cut(s)	223, 295, 547
DdeI	CTNAG	5 cut(s)	173, 290, 357, 386, 428
DpnI	GATC	3 cut(s)	112, 135, 419
DpnII	GATC	3 cut(s)	110, 133, 417
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	301
Eco81I	CCTNAGG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	540
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	1 cut(s)	278
FaiI	YATR	5 cut(s)	27, 183, 276, 441, 491
FalI	AAGNNNNNCTT	4 cut(s)	311, 343, 379, 411
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	4 cut(s)	161, 353, 403, 435
Fsp4HI	GCNGC	4 cut(s)	161, 353, 403, 435
GluI	GCNGC	4 cut(s)	161, 353, 403, 435
GsuI	CTGGAG	2 cut(s)	228, 504
HaeIII	GGCC	2 cut(s)	241, 369
HapII	CCGG	2 cut(s)	164, 178
Hin1II	CATG	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	3 cut(s)	185, 495, 518
HpaII	CCGG	2 cut(s)	164, 178
Hpy166II	GTNNAC	2 cut(s)	81, 325
Hpy188I	TCNGA	1 cut(s)	422
Hpy188III	TCNNGA	4 cut(s)	73, 281, 590, 624
Hpy8I	GTNNAC	2 cut(s)	81, 325
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	101, 574
HpyCH4V	TGCA	5 cut(s)	325, 375, 413, 479, 616
HpyF10VI	GCNNNNNNNGC	5 cut(s)	148, 157, 196, 358, 485
HpyF3I	CTNAG	5 cut(s)	173, 290, 357, 386, 428
Hsp92II	CATG	1 cut(s)	278
KroI	GCCGGC	1 cut(s)	163
KroNI	GCCGGC	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	110, 133, 417
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	4 cut(s)	172, 364, 414, 421
LweI	GCATC	1 cut(s)	400
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	3 cut(s)	112, 135, 419
MboI	GATC	3 cut(s)	110, 133, 417
MboII	GAAGA	4 cut(s)	205, 455, 565, 568
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	2 cut(s)	305, 540
MlyI	GAGTC	2 cut(s)	504, 512
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	9 cut(s)	18, 189, 231, 252, 299, 372, 416, 446, 507
MroNI	GCCGGC	1 cut(s)	163
MspI	CCGG	2 cut(s)	164, 178
MspR9I	CCNGG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	5 cut(s)	148, 157, 196, 358, 485
NaeI	GCCGGC	1 cut(s)	165
NdeII	GATC	3 cut(s)	110, 133, 417
NgoMIV	GCCGGC	1 cut(s)	163
NlaIII	CATG	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	70
PceI	AGGCCT	1 cut(s)	241
PdiI	GCCGGC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	4 cut(s)	162, 354, 404, 436
PleI	GAGTC	2 cut(s)	503, 512
PpsI	GAGTC	2 cut(s)	503, 512
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspPI	GGNCC	2 cut(s)	301, 368
RsaI	GTAC	3 cut(s)	224, 296, 548
RsaNI	GTAC	3 cut(s)	223, 295, 547
SatI	GCNGC	4 cut(s)	161, 353, 403, 435
Sau3AI	GATC	3 cut(s)	110, 133, 417
Sau96I	GGNCC	2 cut(s)	301, 368
ScaI	AGTACT	1 cut(s)	224
SchI	GAGTC	2 cut(s)	504, 512
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	7 cut(s)	296, 324, 380, 397, 436, 490, 535
SfaNI	GCATC	1 cut(s)	400
SinI	GGWCC	1 cut(s)	301
SmlI	CTYRAG	2 cut(s)	226, 522
SmoI	CTYRAG	2 cut(s)	226, 522
Sse9I	AATT	2 cut(s)	305, 540
SseBI	AGGCCT	1 cut(s)	241
SsiI	CCGC	2 cut(s)	104, 383
StuI	AGGCCT	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	318
TaqI	TCGA	1 cut(s)	408
TasI	AATT	2 cut(s)	305, 540
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	185
TscAI	CASTG	2 cut(s)	17, 420
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	4 cut(s)	160, 352, 402, 434
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	3 cut(s)	198, 456, 593
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	2 cut(s)	17, 420
VneI	GTGCAC	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	1 cut(s)	540
XmiI	GTMKAC	1 cut(s)	80
ZrmI	AGTACT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.