Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003867

Physical Location & Seq

Genomic Coordinates Reverse (-)

27517531 .. 27523821

Gene Structure 6291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5691 bp

ATGCTTCCATTCAGGTTTCTCTGGGAGAAAGATCGATGGCCTCCAGCAGCTGGTTATTCATTTGTCTGTTGGTTTCAGTTTCAGAATCTGTTGAAGTTGCAAACAAAAGAAACTGAGTCCAAAGCTGGTTCTTCTAAGAAGTGGAGCAGTTCTGCCGGGCAACATCATGAGCGGCATATTCTCCGGATATTTTCTGTTGGTGCAGCAAATAATGGAAATGCATTCTATGCAGAATTATATATTGACGAGGATGGTGTTCTTACCCTTGCAACTAGCAGTTCTTGCTCCTTATCATTTTCAGGATTGGAACTTGAGGAAGGCAGGTGGCATCACCTTGCAGTTGTACATAGCAAGCCAAATGCTCTTGCTGGATTGTTCCAAGCCAGTGTTGCTTATGTGTATCTTGATGGAAAGCTTAGACACACAGGGAAACTAGGATATTCTCCATCTCCGATTGGGAAACCTTTGCAGGTAACCGTGGGGACTCCGGTTAATTGTGCAAGAGTTAGTGACTTGACCTGGAAGGTCCGTTCTTGCTACCTTTTTGAGGAGGTGCTCACCTCAGGTAGTATTTGTTTCATGTACATTCTTGGTAGAGGATATAGAGGGCTCTACCAGGACACAGATCTTCTTCGTTTTGTCCCCAACCAGGCATGTGGTGGTGGTAGCATGTCTATCTTAGATACCTTGGATGCTGACTTGACCTTGGCTTCTAATACACAGAAGCTTGACATATCTAGTAAGCAAGTAGACTCCAAGGCAGATGGCAGTGGAATTGTTTGGGATTTGGAGAGACTAGGTTATCTCTCTTCACAGCTCTCTGGGAAGAAGCTTATATTCGCATTTGATGGAACCTGTGCAGAAGCTATTCGAGCATCAGGGGAGCTCTCCATGCTCAATCTAGTTGATCCATTGTCGGCAGCTGCTTCTCCTATTGGGGGTATACCACGATTTGGGCGTCTTTATGGGGATATTTACCTATGTAGTCAATGTGTAATCGGTGATACTATCTGCCTGGTTGGTGGGATGACCGTTATCCTGGCCTTAGTTGAGGCTGCTGAGACTAGGGACATGCTACAAATGGCCCTTACTTTACTGGCCTCTGCCCTTCATCAGAATCCTCAGAATGTGAGAGACATGCAAAAATGCCGGGGATACCATTTGTTGGCTCTCTTTTTGCGTCGTCGAATGTCACTGTTTGACATGCAATCTCTTGAGATCTTTTTCCAGATTGCTGCTTGTGAAGCTTCATTTTCGGAACCAAGGAAGTTGAAATATAATCGGACTAATTTGTCACCGGTTACAACTATGCACGAAACCAGTTTTGAGGAAGTTAATTTGTCAAGGTTTCGTGATGAGTTTTCTTCTGTTGGATCTCAAGGAGACATGGATGATTTTTCTGCACCAAAAGATTCATATAGTCATATTTCGGAGCTTGAAAGTGCTGATATTCCGGATGAAACCTCAAATTGCATTGTCTTGTCAAATGAAGACATGGTTGAACATGTCTTGTTGGATTGGACATTGTGGGTAACGGCTCCAGTTGCAATTCAAATTGCACTTCTTGGTTTTCTAGAGCATCTAGTGTCCATGCACTGGTACAGAAATCATAACCTTACTGTTCTGCGCCGAATAAACCTTGTTCAACATTTATTAGTTACTCTACAGCGGGGTGATGTTGAAGTTCCTGTTTTGGAGAAATTGGTTGTATTGCTTGGTGTCATTTTAGAAGATGGGTTTCTCTCTTCTGAACTGGAACATGTGGTTCGGTTTGTGATCATGACATTTGATCCACCTGACTTGACACCCCGACATCCAATAGTGCGTGAGGCCATGGGAAAGCATGTAATTGTGAGAAACATGCTACTGGAGATGCTTATTGATCTGCAAGTAACCATTAAATCTGAAGAATTGCTTGAGCAGTGGCATAAGATTGTTTCTTCTAAATTGATTACATATTTTCTAGACGAATCTGTTCACCCAACAAGTATGAGATGGATCATGACTCTTCTAGGAGTTTGTCTTACTTCGTCTCCTACATTTGCGCTAAAGTTTCGGACAAGTGGAGGTTATCAAGGCTTGACCCGGGTGCTTCCAAGCTTCTATGATTCCCCAGACATATATTACATTTTGTTCTGTCTGATATTCGGAAAGACTGTCTATCCTAGATTGCCAGAAGTTCGCATGCTAGACTTTCATGCACTTATGCCAAATGATGGAAGTAATGTGGAGCTGAAATTTGTAGAATTGTTGGAATCTGTTATTACCATGGCAAAATCTACATTTGATAGGCTGAGCATTCAGTCAATGCTTGCTCACCAATCTGGTAATCTTTCCCAGGTTGGTGCTGGCCTTGTGGCAGAACTCGTGAATGGAAATGCAGACATGGCCGGGGAGCTTCAAGGTGAAGCATTGATGCATAAAACATATGCGGCACGCTTAATGGGTGGGGAGGCATCAGCCCCTTTTGCTGCTACTTCGGTCTTGAGATTTATGGTTGATTTGGCAAAAATGTGCCCCCGTTTCACTGCTGTCTGCAAACGAGCAGAGTTTCTCGAAAGCTGCATTGACCTATATTTTTCTTGTGTCAGAGCGGCCCATGCTGTGAAGATGGCGAAGGAGCTATCTGTAAAGGCAGAAGAGAAGAACTTGAATGATTGTGACGATACTTGTAGTTCACAGAACACGTTTTCTAGCCTACCTCATGAACAGGATCAGTCTGCCAAAACCTCCATTAGTGTTGGAAGCTTCCCTCCTGGTCAGGTGAGTTCAAGTTCTGAAGACACGGCTGTTCCCCTAAATTCTGGGGCCGATGATAAAGCAAAGACCAAGGCTACTACAGCCCAGCAGGAATTGCACATATCAGTGCAAGATGATGTACAAGCTGTTCAGAGCTTAGATGGTGACAATGCTGACCAGGTTTCTGCCACATCCAGCACACATGATTTCAGTTTCCGTAAGAAGGTCACCCTGGAACCCCTTAAACCAGTGGATTCTGAGAGTTCCGCATCTTTTACCATGCTTGATTCTCCCAATTTATCAGAGAAGTCTAGTTTGAGACTCCCACTTACACCCTCTCCTTCTCCTGTTTTAGCATTGACATCTTGGCTGGGAAGTGCAGGCTATAATGAATTCAAATCTCCCTTGGTTGCCACTCCTTCCATTGATTCTTCTGCGATTACCACTGAATTTGATCCATCTGCAGAGCTGAAGTCTCCTGGGCCTTCTAATGCAAGTAATTTTTTTTCAGCTAGTCCAAAGCTACTTCTTGAAATGGATGATTGTGGCTATGGAGGTGGTCCTTGTCCTGCTGGAGCCACTGCAGTTTTAGATTTTATTGCAGAAGTTCTTTCTGAGTTTGTGACCGAGCAAATTAAAGCATCACAGATTATAGAGGGAATCTTGGAAAGTGTTCCATTATATGTTGATGCAGATTCTATGTTGGTATTCCAAGGATTGTGCCTTAGTAGACTGATGAACTTTCTGGAAAGGCGTCTCTTGCGCGATGATGAAGAAAATGAGAAAAAGCTAGATAAAAATCGTTGGTCCTCAAATTTAGATTCATTATGCTGGATGATAGTGGATCGTGCATATATGGGCGCTTTTCCTCAACCCTCTGGAATACTAAAGACGCTTGAGTTCTTATTATCTATGCTACAATTAGCAAATAAAGATGGCCGAATTGAAGAAGCTACTCCTAGTGGGAAGAGCCTCTTATCTATTGGAAGAGGGAGCAGACAACTTGATGCTTATATACATTCAATTCTTAAAAACACAAATCGTATGATACTGTATTGTTTTCTGCCATCATTCTTGTCTTCAATAGGAGAAGATGTTCTGCTTTTGTGCTTAGGTTTGCTAGTTGAATCAAAGAAGAGAGCTTCCTCCAACTCTTCACATGATAATTCAGGAATTAATATCGGCACAGTCTTACAGTTATTAGTTGCTCACCGGCGAATTATATTCTGTCCCAGCAATATGGATACCGATATAAATTGTTGTCTTTGTGTCAATTTAATATCTCTCCTGCATGACCAACGACAGAATGTGCAGAACATGGCTGTTGATATTGTCAAGTATCTCCTGGTGCATCGTCGGGTAGCTCTAGAAGATCTGCTGGTTTCTAAGCCAAATCAAGGACACCAACTGGATGTGCTACATGGGGGATTTGACAAGTTATTAACATTGACTGAAAATTTATCATCTTTCTTTGAATGGCTTCAGAGTTCTGAAGCGATGGTGAATAAAGTACTAGAGCAGTGTGCTTCCATTATGTGGGTACAGTACATTACTGGATCAGCAAAATTTCCAGGAGTGAGAATTAAAGCTATGGAGGGTCGTCGCAAGAGAGAAATGGGGAGAAAATCTAGGGATACGTCAAAGTTAGATATAAAGCACTGGGAGCAGGTGAATGAACGGAGATATGCACTGGAATTGGTGCGTGATGCAATGTCCACTGAACTGAGAGTGGTGCGTCAAGACAAGTATGGATGGGTTCTGCATGCTGAGAGTGAGTGGCAAACGTATCTTCAACAACTTGTCCATGAGCGGGGAATATTCCCAATGCGAAAATCCTCTGTTAATCAGGATCCTGATTGGCAGCTTTGTCCAATTGAAGGTCCATACAGGATGCGCAAAAAACTTGAGCGCTGCAGATTGAAACTTGATACTATCCAAAATGTTCTTGATGGACAATTTGAAGTAAGGGAAGCACAGCTGTCCAAAGAGAATAATGAGAATGATCTGGATGCTTCTGATAATGATTCTGAGTCATACTTTCAACTTTTGACTGATGGTGCCAAACAGAATGGCCTTGATGGTGAACTGTATGAAAGGTCATTTCTTAAAGAGCCTGATAATGCCAAAGATGTTGCTTCTGTTAGTCGTGAATGGAATGATGATAGAGCTAGTAGTATCAATGAAGCAAGTTTGCACTCTGCACTCGAGTTTGGTGGAAAATCTAGTTCAGCATCTGTCCCCATGGATGACAGTGTACATGAAAGATCTGACCTAGGGTCTCCATGGCAATCTTCTTCTGCAAGAATTGATGATGTCAAAGTCACAGATGATAAATCGGATAAGGAACTCCATGATAATGGTGAATACCTGATCAGGCCTTATCTGGAACCTTTTGAAAAGATACGATTTCGGTATAATTGTGAACGAGTTATGGGTCTGGACAAGCATGATGGTATATTTTTAATAGGCGAGCATTCTCTGTATGTGATTGAAAATTTCTATATCGATGACTCTGGGTGTATTTGTGAAAAGGAATGCGAAGATGAACTCTCTATAATCGATCAGGCTCTTGGTGTAAAGAAGGATGTTACTATGGATTTCCATTCAAAGTCAACTTCATCTTGGGGAGCAACAGTAAAGTCAGGAGTTGGGGGAAGAGCATGGGCCTACAATGGCGGTGCATGGGGAAAGGAGAAAGTCTGTACTAGTGGTAATCTACCTCACCCGTGGAACATGTGGAAACTGAACAGTGTTCATGAGCTTTTGAAGCGTGATTACCAGCTGCGTCCTGTTGCTATTGAAATCTTTAGCATGGATGGATGTAATGATCTTTTGGTGTTCCACAAAAAAGAAAGGGAAGAAGTTTTCAAAAATCTAGTAGCCATGAATCTTCCCAGAAATAGCATGTTGGACACAACCATATCAGGATCGAGCAAAACAAGAAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006996 GO:0007033 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009825 GO:0009845 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010154 GO:0016043 GO:0016049 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0032989 GO:0032991 GO:0033554 GO:0033962 GO:0033993 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051049 GO:0051716 GO:0060341 GO:0061458 GO:0065003 GO:0065007 GO:0070925 GO:0071214 GO:0071470 GO:0071472 GO:0071826 GO:0071840 GO:0080001 GO:0090351 GO:0090558 GO:0090626 GO:0097305 GO:0104004 GO:1901700 GO:1903335 GO:1904580 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach Laminin_G_3 PH_BEACH WD40

Protein Analysis

1897

Amino Acids

211.58

Weight (kDa)

5.45

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_BEACH	PF14844	1822 - 1872	2.1e-07	PH domain associated with Beige/BEACH

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03060 AT1G03060 AT1G03060 AT1G03060 AT4G02660 AT4G02660 AT4G02660
fragaria_vesca	FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920
malus_domestica	MD03G1257800.v1.1 MD11G1278500.v1.1
prunus_persica	Prupe.8G234500_v2.0.a1 Prupe.8G234500_v2.0.a1
pyrus_communis	pycom03g20420 pycom11g24600
rosa_chinensis	RchiOBHm_Chr6g0289881
rosa_laevigata	RLG00000012262
rosa_multiflora	Rmu_ssc0000314.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177500
rosa_rugosa	Rorug06G0207500 Rorug06G0207600 Rorug06G0207700 Rorug06G0207800 Rorug06G0207900
rosa_samantha	Rh6AG319100 Rh6BG326100 Rh6CG332000 Rh6DG317600
rosa_wichuraiana	Rw6G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	312, 4396
AasI	GACNNNNNNGTC	1 cut(s)	1291
Acc16I	TGCGCA	1 cut(s)	4634
Acc36I	ACCTGC	3 cut(s)	312, 460, 4396
AccB1I	GGYRCC	1 cut(s)	4796
AccB7I	CCANNNNNTGG	6 cut(s)	50, 953, 1165, 1596, 2216, 4275
AccBSI	CCGCTC	3 cut(s)	172, 2594, 4549
AccI	GTMKAC	3 cut(s)	750, 943, 3469
AccII	CGCG	1 cut(s)	3504
AccIII	TCCGGA	2 cut(s)	183, 1453
AciI	CCGC	7 cut(s)	172, 1669, 2432, 2594, 3006, 4549, 5415
AcoI	YGGCCR	2 cut(s)	2388, 3676
AcsI	RAATTY	8 cut(s)	2237, 2800, 3131, 3188, 3553, 4195, 4304, 5233
AcuI	CTGAAG	5 cut(s)	1926, 2799, 3230, 4205, 4251
AcyI	GRCGYC	2 cut(s)	958, 3493
AfaI	GTAC	9 cut(s)	345, 584, 1601, 2880, 4251, 4281, 4286, 4995, 5443
AfeI	AGCGCT	1 cut(s)	4649
AflIII	ACRYGT	4 cut(s)	1504, 1759, 2685, 5472
AgeI	ACCGGT	1 cut(s)	1297
AhdI	GACNNNNNGTC	1 cut(s)	5014
AhlI	ACTAGT	1 cut(s)	5444
AloI	GAACNNNNNNTCC	4 cut(s)	514, 546, 3819, 3851
Alw21I	GWGCWC	2 cut(s)	558, 888
Alw26I	GTCTC	9 cut(s)	787, 1055, 1128, 1377, 2037, 3052, 3219, 3500, 5022
AlwNI	CAGNNNCTG	3 cut(s)	50, 88, 4973
Ama87I	CYCGRG	2 cut(s)	2085, 4943
Aor13HI	TCCGGA	2 cut(s)	183, 1453
Aor51HI	AGCGCT	1 cut(s)	4649
ApoI	RAATTY	8 cut(s)	2237, 2800, 3131, 3188, 3553, 4195, 4304, 5233
AseI	ATTAAT	1 cut(s)	3915
AsiGI	ACCGGT	1 cut(s)	1297
Asp700I	GAANNNNTTC	5 cut(s)	867, 1974, 3411, 3834, 4218
AspA2I	CCTAGG	1 cut(s)	5011
AspLEI	GCGC	6 cut(s)	1629, 2047, 3504, 3602, 4635, 4650
AspS9I	GGNCC	9 cut(s)	526, 1084, 2596, 2808, 3221, 3299, 3546, 4619, 5403
AsuC2I	CCSGG	5 cut(s)	157, 1151, 2086, 2087, 2392
AvaI	CYCGRG	2 cut(s)	2085, 4943
AvaII	GGWCC	4 cut(s)	526, 3299, 3546, 4619
AvrII	CCTAGG	1 cut(s)	5011
AxyI	CCTNAGG	1 cut(s)	562
BaeGI	GKGCMC	1 cut(s)	2519
BamHI	GGATCC	1 cut(s)	4588
BanI	GGYRCC	1 cut(s)	4796
BanII	GRGCYC	2 cut(s)	612, 888
BarI	GAAGNNNNNNTAC	2 cut(s)	5498, 5530
BauI	CACGAG	1 cut(s)	2366
BbsI	GAAGAC	3 cut(s)	1497, 2787, 3810
Bbv12I	GWGCWC	2 cut(s)	558, 888
BceAI	ACGGC	2 cut(s)	1551, 2802
BciVI	GTATCC	3 cut(s)	1148, 3976, 4366
BclI	TGATCA	2 cut(s)	1776, 5109
BcnI	CCSGG	5 cut(s)	157, 1151, 2086, 2087, 2392
BcoDI	GTCTC	9 cut(s)	787, 1055, 1128, 1377, 2037, 3052, 3219, 3500, 5022
BcuI	ACTAGT	1 cut(s)	5444
BfmI	CTRYAG	5 cut(s)	1664, 2838, 3201, 3321, 4651
BfoI	RGCGCY	2 cut(s)	3603, 4651
BfuAI	ACCTGC	3 cut(s)	312, 460, 4396
BfuI	GTATCC	3 cut(s)	1148, 3976, 4366
BglII	AGATCT	4 cut(s)	625, 1218, 4111, 5003
BlnI	CCTAGG	1 cut(s)	5011
BlpI	GCTNAGC	1 cut(s)	2294
BmcAI	AGTACT	1 cut(s)	4251
Bme18I	GGWCC	4 cut(s)	526, 3299, 3546, 4619
BmeRI	GACNNNNNGTC	1 cut(s)	5014
BmeT110I	CYCGRG	2 cut(s)	2085, 4943
BmgT120I	GGNCC	9 cut(s)	526, 1084, 2596, 2808, 3221, 3299, 3546, 4619, 5403
BmiI	GGNNCC	9 cut(s)	853, 1260, 1539, 2809, 2976, 3316, 4590, 4798, 5127
BmrI	ACTGGG	1 cut(s)	4408
BmuI	ACTGGG	1 cut(s)	4408
BpiI	GAAGAC	3 cut(s)	1497, 2787, 3810
BpmI	CTGGAG	4 cut(s)	27, 1524, 1889, 3333
Bpu10I	CCTNAGC	1 cut(s)	3850
Bpu1102I	GCTNAGC	1 cut(s)	2294
BpuEI	CTTGAG	7 cut(s)	332, 1235, 1362, 1937, 2506, 3656, 4664
BpuMI	CCSGG	5 cut(s)	157, 1151, 2086, 2087, 2392
Bsa29I	ATCGAT	3 cut(s)	34, 5244, 5298
BsaBI	GATNNNNATC	1 cut(s)	3537
BsaHI	GRCGYC	2 cut(s)	958, 3493
BsaI	GGTCTC	1 cut(s)	5022
BsaWI	WCCGGW	4 cut(s)	183, 487, 1297, 1453
BsaXI	ACNNNNNCTCC	8 cut(s)	2017, 2047, 3061, 3091, 3819, 3849, 5358, 5388
Bse118I	RCCGGY	2 cut(s)	1297, 3951
Bse21I	CCTNAGG	1 cut(s)	562
Bse3DI	GCAATG	1 cut(s)	4455
Bse8I	GATNNNNATC	1 cut(s)	3537
BseAI	TCCGGA	2 cut(s)	183, 1453
BseCI	ATCGAT	3 cut(s)	34, 5244, 5298
BseJI	GATNNNNATC	1 cut(s)	3537
BseMI	GCAATG	1 cut(s)	4455
BseRI	GAGGAG	1 cut(s)	563
BseSI	GKGCMC	1 cut(s)	2519
BseYI	CCCAGC	3 cut(s)	2844, 3109, 3971
BsgI	GTGCAG	6 cut(s)	222, 879, 1386, 3138, 4070, 4923
Bsh1236I	CGCG	1 cut(s)	3504
BshNI	GGYRCC	1 cut(s)	4796
BshTI	ACCGGT	1 cut(s)	1297
BshVI	ATCGAT	3 cut(s)	34, 5244, 5298
BsiHKAI	GWGCWC	2 cut(s)	558, 888
BsiHKCI	CYCGRG	2 cut(s)	2085, 4943
BsiSI	CCGG	9 cut(s)	156, 184, 488, 1150, 1298, 1454, 2086, 2391, 3952
BslFI	GGGAC	5 cut(s)	496, 626, 1082, 3954, 4961
BsmAI	GTCTC	9 cut(s)	787, 1055, 1128, 1377, 2037, 3052, 3219, 3500, 5022
BsmBI	CGTCTC	2 cut(s)	2037, 3500
BsmFI	GGGAC	5 cut(s)	496, 626, 1082, 3954, 4961
BsmI	GAATGC	4 cut(s)	221, 2298, 5212, 5279
Bso31I	GGTCTC	1 cut(s)	5022
BsoBI	CYCGRG	2 cut(s)	2085, 4943
Bsp1286I	GDGCHC	4 cut(s)	558, 612, 888, 2519
Bsp13I	TCCGGA	2 cut(s)	183, 1453
Bsp1407I	TGTACA	4 cut(s)	343, 582, 2878, 4993
Bsp1720I	GCTNAGC	1 cut(s)	2294
Bsp19I	CCATGG	4 cut(s)	1833, 2268, 4980, 5021
BspACI	CCGC	7 cut(s)	172, 1669, 2432, 2594, 3006, 4549, 5415
BspDI	ATCGAT	3 cut(s)	34, 5244, 5298
BspEI	TCCGGA	2 cut(s)	183, 1453
BspFNI	CGCG	1 cut(s)	3504
BspHI	TCATGA	5 cut(s)	166, 1779, 2001, 2704, 5494
BspLI	GGNNCC	9 cut(s)	853, 1260, 1539, 2809, 2976, 3316, 4590, 4798, 5127
BspMAI	CTGCAG	3 cut(s)	3205, 3325, 4655
BspMI	ACCTGC	3 cut(s)	312, 460, 4396
BspQI	GCTCTTC	2 cut(s)	3701, 5389
BspT107I	GGYRCC	1 cut(s)	4796
BspTNI	GGTCTC	1 cut(s)	5022
BsrBI	CCGCTC	3 cut(s)	172, 2594, 4549
BsrDI	GCAATG	1 cut(s)	4455
BsrFI	RCCGGY	2 cut(s)	1297, 3951
BsrGI	TGTACA	4 cut(s)	343, 582, 2878, 4993
BssAI	RCCGGY	2 cut(s)	1297, 3951
BssNAI	GTATAC	1 cut(s)	944
BssNI	GRCGYC	2 cut(s)	958, 3493
BssSI	CACGAG	1 cut(s)	2366
Bst1107I	GTATAC	1 cut(s)	944
Bst2BI	CACGAG	1 cut(s)	2366
Bst6I	CTCTTC	9 cut(s)	814, 1750, 2013, 2634, 3701, 3721, 3869, 3898, 5389
BstACI	GRCGYC	2 cut(s)	958, 3493
BstAPI	GCANNNNNTGC	3 cut(s)	227, 282, 2854
BstAUI	TGTACA	4 cut(s)	343, 582, 2878, 4993
BstC8I	GCNNGC	8 cut(s)	353, 2186, 2313, 2350, 2437, 3121, 4503, 5210
BstDSI	CCRYGG	6 cut(s)	477, 1833, 2268, 4980, 5021, 5465
BstEII	GGTNACC	2 cut(s)	472, 2965
BstENI	CCTNNNNNAGG	1 cut(s)	545
BstFNI	CGCG	1 cut(s)	3504
BstH2I	RGCGCY	2 cut(s)	3603, 4651
BstHHI	GCGC	6 cut(s)	1629, 2047, 3504, 3602, 4635, 4650
BstMAI	GTCTC	9 cut(s)	787, 1055, 1128, 1377, 2037, 3052, 3219, 3500, 5022
BstPI	GGTNACC	2 cut(s)	472, 2965
BstSFI	CTRYAG	5 cut(s)	1664, 2838, 3201, 3321, 4651
BstSLI	GKGCMC	1 cut(s)	2519
BstUI	CGCG	1 cut(s)	3504
BstV2I	GAAGAC	3 cut(s)	1497, 2787, 3810
BstX2I	RGATCY	6 cut(s)	625, 1218, 1373, 4111, 4588, 5003
BstXI	CCANNNNNNTGG	3 cut(s)	656, 3979, 5096
BstYI	RGATCY	6 cut(s)	625, 1218, 1373, 4111, 4588, 5003
BstZ17I	GTATAC	1 cut(s)	944
Bsu15I	ATCGAT	3 cut(s)	34, 5244, 5298
Bsu36I	CCTNAGG	1 cut(s)	562
BsuI	GTATCC	3 cut(s)	1148, 3976, 4366
BsuTUI	ATCGAT	3 cut(s)	34, 5244, 5298
BtgI	CCRYGG	6 cut(s)	477, 1833, 2268, 4980, 5021, 5465
BtgZI	GCGATG	2 cut(s)	3519, 4250
BtsI	GCAGTG	5 cut(s)	775, 1928, 2526, 3318, 4265
BveI	ACCTGC	3 cut(s)	312, 460, 4396
Cac8I	GCNNGC	8 cut(s)	353, 2186, 2313, 2350, 2437, 3121, 4503, 5210
CaiI	CAGNNNCTG	3 cut(s)	50, 88, 4973
CciI	TCATGA	5 cut(s)	166, 1779, 2001, 2704, 5494
CfoI	GCGC	6 cut(s)	1629, 2047, 3504, 3602, 4635, 4650
Cfr10I	RCCGGY	2 cut(s)	1297, 3951
Cfr13I	GGNCC	9 cut(s)	526, 1084, 2596, 2808, 3221, 3299, 3546, 4619, 5403
Cfr9I	CCCGGG	1 cut(s)	2085
ClaI	ATCGAT	3 cut(s)	34, 5244, 5298
CseI	GACGC	6 cut(s)	947, 1169, 3482, 3640, 4463, 5513
CsiI	ACCWGGT	1 cut(s)	2916
Csp6I	GTAC	9 cut(s)	344, 583, 1600, 2879, 4250, 4280, 4285, 4994, 5442
CspAI	ACCGGT	1 cut(s)	1297
CspCI	CAANNNNNGTGG	4 cut(s)	1782, 1817, 3172, 3207
CviQI	GTAC	9 cut(s)	344, 583, 1600, 2879, 4250, 4280, 4285, 4994, 5442
DrdI	GACNNNNNNGTC	1 cut(s)	1291
DriI	GACNNNNNGTC	1 cut(s)	5014
DseDI	GACNNNNNNGTC	1 cut(s)	1291
EaeI	YGGCCR	2 cut(s)	2388, 3676
Eam1104I	CTCTTC	9 cut(s)	814, 1750, 2013, 2634, 3701, 3721, 3869, 3898, 5389
Eam1105I	GACNNNNNGTC	1 cut(s)	5014
EarI	CTCTTC	9 cut(s)	814, 1750, 2013, 2634, 3701, 3721, 3869, 3898, 5389
Ecl136II	GAGCTC	1 cut(s)	886
Eco147I	AGGCCT	1 cut(s)	5116
Eco24I	GRGCYC	2 cut(s)	612, 888
Eco31I	GGTCTC	1 cut(s)	5022
Eco47I	GGWCC	4 cut(s)	526, 3299, 3546, 4619
Eco47III	AGCGCT	1 cut(s)	4649
Eco53kI	GAGCTC	1 cut(s)	886
Eco57I	CTGAAG	5 cut(s)	1926, 2799, 3230, 4205, 4251
Eco81I	CCTNAGG	1 cut(s)	562
Eco88I	CYCGRG	2 cut(s)	2085, 4943
Eco91I	GGTNACC	2 cut(s)	472, 2965
EcoICRI	GAGCTC	1 cut(s)	886
EcoNI	CCTNNNNNAGG	1 cut(s)	545
EcoO65I	GGTNACC	2 cut(s)	472, 2965
EcoRI	GAATTC	1 cut(s)	3131
EcoT22I	ATGCAT	2 cut(s)	223, 2421
EcoT38I	GRGCYC	2 cut(s)	612, 888
Esp3I	CGTCTC	2 cut(s)	2037, 3500
FalI	AAGNNNNNCTT	4 cut(s)	1899, 1931, 3698, 3730
FaqI	GGGAC	5 cut(s)	496, 626, 1082, 3954, 4961
FauI	CCCGC	2 cut(s)	1662, 4542
FauNDI	CATATG	1 cut(s)	2428
FbaI	TGATCA	2 cut(s)	1776, 5109
FblI	GTMKAC	3 cut(s)	750, 943, 3469
FriOI	GRGCYC	2 cut(s)	612, 888
FspI	TGCGCA	1 cut(s)	4634
GlaI	GCGC	6 cut(s)	1628, 2046, 3503, 3601, 4634, 4649
GsaI	CCCAGC	3 cut(s)	2848, 3113, 3975
GsuI	CTGGAG	4 cut(s)	27, 1524, 1889, 3333
HaeII	RGCGCY	2 cut(s)	3603, 4651
HapII	CCGG	9 cut(s)	156, 184, 488, 1150, 1298, 1454, 2086, 2391, 3952
HgaI	GACGC	6 cut(s)	947, 1169, 3482, 3640, 4463, 5513
HhaI	GCGC	6 cut(s)	1629, 2047, 3504, 3602, 4635, 4650
Hin1I	GRCGYC	2 cut(s)	958, 3493
Hin6I	GCGC	6 cut(s)	1627, 2045, 3502, 3600, 4633, 4648
HinP1I	GCGC	6 cut(s)	1627, 2045, 3502, 3600, 4633, 4648
HincII	GTYRAC	1 cut(s)	5352
HindII	GTYRAC	1 cut(s)	5352
HindIII	AAGCTT	6 cut(s)	413, 725, 830, 1245, 2098, 2746
HpaII	CCGG	9 cut(s)	156, 184, 488, 1150, 1298, 1454, 2086, 2391, 3952
Hpy99I	CGWCG	4 cut(s)	1185, 1188, 4098, 4344
HpyCH4IV	ACGT	3 cut(s)	2687, 4376, 4523
HpySE526I	ACGT	3 cut(s)	2687, 4376, 4523
Hsp92I	GRCGYC	2 cut(s)	958, 3493
HspAI	GCGC	6 cut(s)	1627, 2045, 3502, 3600, 4633, 4648
Kpn2I	TCCGGA	2 cut(s)	183, 1453
Ksp22I	TGATCA	2 cut(s)	1776, 5109
LguI	GCTCTTC	2 cut(s)	3701, 5389
MabI	ACCWGGT	1 cut(s)	2916
MaeII	ACGT	3 cut(s)	2687, 4376, 4523
MbiI	CCGCTC	3 cut(s)	172, 2594, 4549
MfeI	CAATTG	1 cut(s)	4611
MflI	RGATCY	6 cut(s)	625, 1218, 1373, 4111, 4588, 5003
MhlI	GDGCHC	4 cut(s)	558, 612, 888, 2519
MlyI	GAGTC	7 cut(s)	125, 478, 746, 1999, 3054, 4778, 5243
MmeI	TCCRAC	6 cut(s)	1351, 1494, 2232, 2722, 3912, 5628
Mph1103I	ATGCAT	2 cut(s)	223, 2421
MroI	TCCGGA	2 cut(s)	183, 1453
MroXI	GAANNNNTTC	5 cut(s)	867, 1974, 3411, 3834, 4218
MslI	CAYNNNNRTG	2 cut(s)	2864, 5094
MspA1I	CMGCKG	5 cut(s)	50, 923, 1669, 4717, 5521
MspI	CCGG	9 cut(s)	156, 184, 488, 1150, 1298, 1454, 2086, 2391, 3952
MunI	CAATTG	1 cut(s)	4611
Mva1269I	GAATGC	4 cut(s)	221, 2298, 5212, 5279
MvnI	CGCG	1 cut(s)	3504
NciI	CCSGG	5 cut(s)	157, 1151, 2086, 2087, 2392
NcoI	CCATGG	4 cut(s)	1833, 2268, 4980, 5021
NdeI	CATATG	1 cut(s)	2428
NlaIV	GGNNCC	9 cut(s)	853, 1260, 1539, 2809, 2976, 3316, 4590, 4798, 5127
NmuCI	GTSAC	8 cut(s)	509, 1191, 1293, 2660, 2903, 2965, 3361, 5059
NsbI	TGCGCA	1 cut(s)	4634
NsiI	ATGCAT	2 cut(s)	223, 2421
PaeI	GCATGC	2 cut(s)	2188, 4505
PaeR7I	CTCGAG	1 cut(s)	4943
PagI	TCATGA	5 cut(s)	166, 1779, 2001, 2704, 5494
PaqCI	CACCTGC	2 cut(s)	312, 4396
PceI	AGGCCT	1 cut(s)	5116
PciI	ACATGT	3 cut(s)	1504, 1759, 5472
PciSI	GCTCTTC	2 cut(s)	3701, 5389
PcsI	WCGNNNNNNNCGW	1 cut(s)	955
PctI	GAATGC	4 cut(s)	221, 2298, 5212, 5279
PdmI	GAANNNNTTC	5 cut(s)	867, 1974, 3411, 3834, 4218
PflMI	CCANNNNNTGG	6 cut(s)	50, 953, 1165, 1596, 2216, 4275
PfoI	TCCNGGA	1 cut(s)	4309
PinAI	ACCGGT	1 cut(s)	1297
PleI	GAGTC	7 cut(s)	124, 478, 746, 1999, 3054, 4777, 5243
PpsI	GAGTC	7 cut(s)	124, 478, 746, 1999, 3054, 4777, 5243
PscI	ACATGT	3 cut(s)	1504, 1759, 5472
PshBI	ATTAAT	1 cut(s)	3915
Psp124BI	GAGCTC	1 cut(s)	888
PspEI	GGTNACC	2 cut(s)	472, 2965
PspFI	CCCAGC	3 cut(s)	2844, 3109, 3971
PspN4I	GGNNCC	9 cut(s)	853, 1260, 1539, 2809, 2976, 3316, 4590, 4798, 5127
PspPI	GGNCC	9 cut(s)	526, 1084, 2596, 2808, 3221, 3299, 3546, 4619, 5403
PspXI	VCTCGAGB	1 cut(s)	4943
PsrI	GAACNNNNNNTAC	2 cut(s)	2871, 2903
PstI	CTGCAG	3 cut(s)	3205, 3325, 4655
PstNI	CAGNNNCTG	3 cut(s)	50, 88, 4973
PsuI	RGATCY	6 cut(s)	625, 1218, 1373, 4111, 4588, 5003
PvuII	CAGCTG	4 cut(s)	50, 923, 4717, 5521
RsaI	GTAC	9 cut(s)	345, 584, 1601, 2880, 4251, 4281, 4286, 4995, 5443
RsaNI	GTAC	9 cut(s)	344, 583, 1600, 2879, 4250, 4280, 4285, 4994, 5442
RseI	CAYNNNNRTG	2 cut(s)	2864, 5094
SacI	GAGCTC	1 cut(s)	888
SapI	GCTCTTC	2 cut(s)	3701, 5389
Sau96I	GGNCC	9 cut(s)	526, 1084, 2596, 2808, 3221, 3299, 3546, 4619, 5403
ScaI	AGTACT	1 cut(s)	4251
SchI	GAGTC	7 cut(s)	125, 478, 746, 1999, 3054, 4778, 5243
SduI	GDGCHC	4 cut(s)	558, 612, 888, 2519
SexAI	ACCWGGT	1 cut(s)	2916
SfcI	CTRYAG	5 cut(s)	1664, 2838, 3201, 3321, 4651
Sfr274I	CTCGAG	1 cut(s)	4943
SgrAI	CRCCGGYG	1 cut(s)	3951
SinI	GGWCC	4 cut(s)	526, 3299, 3546, 4619
SlaI	CTCGAG	1 cut(s)	4943
SmaI	CCCGGG	1 cut(s)	2087
SmiMI	CAYNNNNRTG	2 cut(s)	2864, 5094
SmlI	CTYRAG	8 cut(s)	311, 1214, 1377, 1916, 2485, 3635, 4643, 4943
SmoI	CTYRAG	8 cut(s)	311, 1214, 1377, 1916, 2485, 3635, 4643, 4943
SpeI	ACTAGT	1 cut(s)	5444
SphI	GCATGC	2 cut(s)	2188, 4505
SseBI	AGGCCT	1 cut(s)	5116
SsiI	CCGC	7 cut(s)	172, 1669, 2432, 2594, 3006, 4549, 5415
SspI	AATATT	1 cut(s)	4557
SstI	GAGCTC	1 cut(s)	888
StuI	AGGCCT	1 cut(s)	5116
TaiI	ACGT	3 cut(s)	2690, 4379, 4526
TaqI	TCGA	8 cut(s)	34, 871, 1186, 2556, 4944, 5244, 5298, 5669
TaqII	GACCGA	2 cut(s)	2470, 3380
TatI	WGTACW	7 cut(s)	343, 582, 2878, 4249, 4284, 4993, 5441
TauI	GCSGC	3 cut(s)	175, 2435, 2597
TseFI	GTSAC	8 cut(s)	509, 1191, 1293, 2660, 2903, 2965, 3361, 5059
Tsp45I	GTSAC	8 cut(s)	509, 1191, 1293, 2660, 2903, 2965, 3361, 5059
TspGWI	ACGGA	3 cut(s)	518, 2945, 4432
TspMI	CCCGGG	1 cut(s)	2085
Van91I	CCANNNNNTGG	6 cut(s)	50, 953, 1165, 1596, 2216, 4275
VpaK11BI	GGWCC	4 cut(s)	526, 3299, 3546, 4619
VspI	ATTAAT	1 cut(s)	3915
XagI	CCTNNNNNAGG	1 cut(s)	545
XapI	RAATTY	8 cut(s)	2237, 2800, 3131, 3188, 3553, 4195, 4304, 5233
XbaI	TCTAGA	3 cut(s)	1573, 1963, 4105
XcmI	CCANNNNNNNNNTGG	2 cut(s)	656, 2345
XhoI	CTCGAG	1 cut(s)	4943
XmaI	CCCGGG	1 cut(s)	2085
XmaJI	CCTAGG	1 cut(s)	5011
XmiI	GTMKAC	3 cut(s)	750, 943, 3469
XmnI	GAANNNNTTC	5 cut(s)	867, 1974, 3411, 3834, 4218
ZrmI	AGTACT	1 cut(s)	4251
Zsp2I	ATGCAT	2 cut(s)	223, 2421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.