pycom11g24720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010606
Physical Location & Seq
Forward (+)
27613047 .. 27613488
442 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGGTGGTCGATCATGGCTTCCGCCCGGCCTTCGTATTACCACTAGTTCTGGTCTTTACCTTCTCATTTATGAGCTCCAAAACAATAGTTGCGGGGGCTCGCTGCCTTCTGGAGACTTCCTTGCCTCATGTGCCCGAGCTTCCGAAGCCTGAGCTGCCACCACTTCCCAATTTCCCAACGTTGCCAAAGCCTGAGCTGCCGCCGTTGCCTAAACCCGAATTGCCAAACTGCCACAGTTGCCGAAACCTGAATTGCCAAAGTTTTCAAAGCCTGAGCTGCCGCATGAGCTTCCAAAGCCTGAGTTGCCGCCATTGCCTAAACCCGAATTGCCAAAGTTTCCGAAGCCTGAGTTGCCACCACTCTCTAAAGCCGAAAATGCACCAAAGCCAGAGGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.83

Weight (kDa)

9.15

Isoelectric Point (pI)

85.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 22, 92, 200, 280, 307
AclI AACGTT 1 cut(s) 179
AgsI TTSAA 1 cut(s) 266
AhlI ACTAGT 1 cut(s) 43
AluBI AGCT 6 cut(s) 75, 139, 154, 196, 276, 288
AluI AGCT 6 cut(s) 75, 139, 154, 196, 276, 288
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 107
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 2 cut(s) 27, 393
ApeKI GCWGC 4 cut(s) 102, 154, 196, 276
AspS9I GGNCC 1 cut(s) 393
AsuC2I CCSGG 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 135
BanII GRGCYC 2 cut(s) 77, 100
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 4 cut(s) 89, 141, 183, 263
BceAI ACGGC 1 cut(s) 187
BcnI CCSGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 107
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 1 cut(s) 44
BisI GCNGC 7 cut(s) 103, 155, 197, 200, 277, 280, 307
BlsI GCNGC 7 cut(s) 104, 156, 198, 201, 278, 281, 308
Bme1390I CCNGG 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 393
BmrFI CCNGG 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 131
Bpu10I CCTNAGC 3 cut(s) 150, 192, 272
BpuMI CCSGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 310
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 5 cut(s) 141, 183, 263, 290, 338
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 4 cut(s) 89, 141, 183, 263
BshFI GGCC 2 cut(s) 29, 395
BsiHKAI GWGCWC 1 cut(s) 77
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 2 cut(s) 29, 395
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 3 cut(s) 77, 100, 135
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 5 cut(s) 22, 92, 200, 280, 307
BspANI GGCC 2 cut(s) 29, 395
BspCNI CTCAG 5 cut(s) 142, 184, 264, 291, 339
BsrDI GCAATG 1 cut(s) 310
BssMI GATC 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 5 cut(s) 150, 192, 272, 299, 347
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 24
BstSLI GKGCMC 1 cut(s) 135
BstV1I GCAGC 4 cut(s) 89, 141, 183, 263
BsuRI GGCC 2 cut(s) 29, 395
Cac8I GCNNGC 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 393
CviAII CATG 3 cut(s) 14, 128, 283
DdeI CTNAG 5 cut(s) 150, 192, 272, 299, 347
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
EciI GGCGGA 1 cut(s) 11
Ecl136II GAGCTC 1 cut(s) 75
Eco24I GRGCYC 2 cut(s) 77, 100
Eco53kI GAGCTC 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 393
EcoT38I GRGCYC 2 cut(s) 77, 100
FaeI CATG 3 cut(s) 17, 131, 286
FaiI YATR 4 cut(s) 15, 71, 129, 284
FatI CATG 3 cut(s) 13, 127, 282
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 7 cut(s) 103, 155, 197, 200, 277, 280, 307
FriOI GRGCYC 2 cut(s) 77, 100
Fsp4HI GCNGC 7 cut(s) 103, 155, 197, 200, 277, 280, 307
FspBI CTAG 1 cut(s) 44
GluI GCNGC 7 cut(s) 103, 155, 197, 200, 277, 280, 307
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 2 cut(s) 29, 395
HapII CCGG 1 cut(s) 26
Hin1II CATG 3 cut(s) 17, 131, 286
HpaII CCGG 1 cut(s) 26
Hpy188I TCNGA 2 cut(s) 144, 341
Hpy188III TCNNGA 1 cut(s) 110
HpyAV CCTTC 3 cut(s) 40, 70, 116
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 1 cut(s) 379
HpyF3I CTNAG 5 cut(s) 150, 192, 272, 299, 347
HpySE526I ACGT 1 cut(s) 179
Hsp92II CATG 3 cut(s) 17, 131, 286
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 9 cut(s) 35, 39, 95, 162, 204, 260, 284, 311, 359
Lsp1109I GCAGC 4 cut(s) 89, 141, 183, 263
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 179
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MhlI GDGCHC 3 cut(s) 77, 100, 135
MluCI AATT 4 cut(s) 169, 218, 250, 325
MnlI CCTC 2 cut(s) 135, 384
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 26
NciI CCSGG 1 cut(s) 26
NdeII GATC 1 cut(s) 10
NlaIII CATG 3 cut(s) 17, 131, 286
PkrI GCNGC 7 cut(s) 104, 156, 198, 201, 278, 281, 308
Psp124BI GAGCTC 1 cut(s) 77
Psp1406I AACGTT 1 cut(s) 179
PspPI GGNCC 1 cut(s) 393
SacI GAGCTC 1 cut(s) 77
SatI GCNGC 7 cut(s) 103, 155, 197, 200, 277, 280, 307
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 393
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 3 cut(s) 77, 100, 135
SetI ASST 9 cut(s) 62, 77, 141, 156, 182, 198, 249, 278, 290
SpeI ACTAGT 1 cut(s) 43
Sse9I AATT 4 cut(s) 169, 218, 250, 325
SsiI CCGC 5 cut(s) 22, 92, 200, 280, 307
SspMI CTAG 1 cut(s) 44
SstI GAGCTC 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 1 cut(s) 182
TaqI TCGA 1 cut(s) 9
TasI AATT 4 cut(s) 169, 218, 250, 325
TauI GCSGC 3 cut(s) 202, 282, 309
TseI GCWGC 4 cut(s) 102, 154, 196, 276
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.