pycom11g25040

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010787
Physical Location & Seq
Forward (+)
27909524 .. 27910977
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 783 bp
ATGGCGGATTCTCAACCATCCCCAACTCATAAAAACTACTCAAAAAGCCCATCCTTCTTCGACTCTCCAAGATTCAGAGGCTTCGCGATAAAGGGCAGTTTCGAAACCGATTCAAATTTGATCAGCCCAACTTCAATTCTTGACACCACCAAGCCATTCCCCTTCGGAAGAAACCCGTTTTCGGGTGACCAAATCCAACCCAAAACCCCAAAAACTCAACCCGGGAACAAACCCTTTTGGGAGAAATCTGAGGCCAAAGGGATTGGCCTTGCTCTGGTTCAAACACTCAAAGATGAAAACTTGGAAGACAAAAATTCAAAAACCAGTAACCGTAAGGTCCTGTTTGGCACTAAGCTCAGAGTTCAAATCCCCAAGACTTTGAATTCCCAGTTTTCAGAAACTGGGTCTGTTAACTCTGGCATCCAAACAGAGAACCCAAATTCGGGTTCGAATTCGGGTGGTTGTGTGAGCGAGAGAAGTGAAATGGAGCTTTCTGAGGATTATACTTGTGTGATTTCTCGTGGGCCGAAGCCGAGAACGACTCACATATTTGATAACTGCATTGTGGAAAGTTACCATACTATGTCGGATCAGTCGAGCTCCGGTTCTGAGAATTTTCTTAGCTTTTGTTACACATGCAGGAAGAATCTTGAACAGAAGATTGACATCTACATTTACAGAGGTGAGAAGGCGTTTTGCAGTCAAGAATGCCGGTACCAAGAAATGCTCTTGGATGAAGTTGGGAACACAGAACTTGATGATACATTTAGGAGTTGTTCTTGA

Protein Analysis

261

Amino Acids

29.11

Weight (kDa)

6.01

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 198 - 246 1.2e-20 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010787)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63210
fragaria_vesca FvH4_2g23270 FvH4_2g23270 FvH4_2g23270
malus_domestica MD03G1262000.v1.1 MD11G1282700.v1.1
prunus_persica Prupe.8G238300_v2.0.a1
pyrus_communis pycom11g25040
rosa_chinensis RchiOBHm_Chr6g0290641
rosa_laevigata RLG00000012188
rosa_multiflora Rmu_sc0006791.1_g000009
rosa_roxburghii Rroxscaffold_7G00176850
rosa_rugosa Rorug06G0213800 Rorug06G0213900 Rorug06G0213900 Rorug06G0214000
rosa_samantha Rh6AG324400 Rh6BG331900 Rh6DG325100
rosa_wichuraiana Rw6G028160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 714
AccB1I GGYRCC 1 cut(s) 714
AccII CGCG 1 cut(s) 86
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 597
AcsI RAATTY 6 cut(s) 115, 313, 382, 439, 451, 613
AfaI GTAC 1 cut(s) 716
AfiI CCNNNNNNNGG 5 cut(s) 181, 182, 274, 442, 443
AgsI TTSAA 7 cut(s) 114, 135, 281, 318, 365, 382, 653
AjuI GAANNNNNNNTTGG 2 cut(s) 430, 462
AluBI AGCT 4 cut(s) 355, 490, 600, 624
AluI AGCT 4 cut(s) 355, 490, 600, 624
Alw21I GWGCWC 1 cut(s) 602
AlwI GGATC 1 cut(s) 597
AlwNI CAGNNNCTG 1 cut(s) 401
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 3 cut(s) 252, 265, 524
ApoI RAATTY 6 cut(s) 115, 313, 382, 439, 451, 613
Asp718I GGTACC 1 cut(s) 714
AspS9I GGNCC 2 cut(s) 337, 524
AsuC2I CCSGG 2 cut(s) 222, 223
AsuHPI GGTGA 2 cut(s) 197, 695
AsuII TTCGAA 2 cut(s) 102, 449
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 337
BanI GGYRCC 1 cut(s) 714
BanII GRGCYC 1 cut(s) 602
BauI CACGAG 1 cut(s) 519
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 602
BccI CCATC 2 cut(s) 25, 58
BclI TGATCA 1 cut(s) 120
BcnI CCSGG 2 cut(s) 222, 223
Bme1390I CCNGG 2 cut(s) 222, 223
Bme18I GGWCC 1 cut(s) 337
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 337, 524
BmiI GGNNCC 1 cut(s) 716
BmrFI CCNGG 2 cut(s) 222, 223
BmrI ACTGGG 2 cut(s) 382, 411
BmsI GCATC 1 cut(s) 429
BmuI ACTGGG 2 cut(s) 382, 411
BpiI GAAGAC 1 cut(s) 312
BplI GAGNNNNNCTC 2 cut(s) 526, 558
Bpu14I TTCGAA 2 cut(s) 102, 449
BpuMI CCSGG 2 cut(s) 222, 223
BsaBI GATNNNNATC 1 cut(s) 665
BsaJI CCNNGG 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 602
Bsc4I CCNNNNNNNGG 5 cut(s) 181, 182, 274, 442, 443
Bse118I RCCGGY 1 cut(s) 711
Bse1I ACTGG 3 cut(s) 324, 388, 406
Bse8I GATNNNNATC 1 cut(s) 665
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 4 cut(s) 17, 50, 420, 739
BseJI GATNNNNATC 1 cut(s) 665
BseLI CCNNNNNNNGG 5 cut(s) 181, 182, 274, 442, 443
BseMII CTCAG 4 cut(s) 240, 370, 486, 600
BseNI ACTGG 3 cut(s) 324, 388, 406
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 3 cut(s) 254, 267, 526
BshNI GGYRCC 1 cut(s) 714
BsiHKAI GWGCWC 1 cut(s) 602
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 3 cut(s) 222, 603, 712
BslI CCNNNNNNNGG 5 cut(s) 181, 182, 274, 442, 443
BsmI GAATGC 1 cut(s) 713
BsnI GGCC 3 cut(s) 254, 267, 526
BsoBI CYCGRG 1 cut(s) 221
Bsp119I TTCGAA 2 cut(s) 102, 449
Bsp1286I GDGCHC 1 cut(s) 602
Bsp143I GATC 2 cut(s) 120, 589
Bsp68I TCGCGA 1 cut(s) 86
BspACI CCGC 1 cut(s) 5
BspANI GGCC 3 cut(s) 254, 267, 526
BspCNI CTCAG 4 cut(s) 241, 369, 487, 601
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 716
BspPI GGATC 1 cut(s) 597
BspT104I TTCGAA 2 cut(s) 102, 449
BspT107I GGYRCC 1 cut(s) 714
BsrFI RCCGGY 1 cut(s) 711
BsrI ACTGG 3 cut(s) 324, 388, 406
BssAI RCCGGY 1 cut(s) 711
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 2 cut(s) 120, 589
BssSI CACGAG 1 cut(s) 519
Bst2BI CACGAG 1 cut(s) 519
Bst4CI ACNGT 1 cut(s) 332
BstBI TTCGAA 2 cut(s) 102, 449
BstDEI CTNAG 6 cut(s) 249, 351, 356, 495, 609, 620
BstEII GGTNACC 1 cut(s) 185
BstF5I GGATG 4 cut(s) 17, 50, 420, 739
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 2 cut(s) 123, 592
BstMBI GATC 2 cut(s) 120, 589
BstNSI RCATGY 1 cut(s) 639
BstPI GGTNACC 1 cut(s) 185
BstSCI CCNGG 2 cut(s) 220, 221
BstUI CGCG 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 312
BsuRI GGCC 3 cut(s) 254, 267, 526
BtsCI GGATG 4 cut(s) 17, 50, 420, 739
BtuMI TCGCGA 1 cut(s) 86
CaiI CAGNNNCTG 1 cut(s) 401
Cfr10I RCCGGY 1 cut(s) 711
Cfr13I GGNCC 2 cut(s) 337, 524
Cfr9I CCCGGG 1 cut(s) 221
Csp6I GTAC 1 cut(s) 715
CviAII CATG 1 cut(s) 636
CviQI GTAC 1 cut(s) 715
DdeI CTNAG 6 cut(s) 249, 351, 356, 495, 609, 620
DpnI GATC 2 cut(s) 122, 591
DpnII GATC 2 cut(s) 120, 589
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 600
Eco24I GRGCYC 1 cut(s) 602
Eco47I GGWCC 1 cut(s) 337
Eco53kI GAGCTC 1 cut(s) 600
Eco88I CYCGRG 1 cut(s) 221
Eco91I GGTNACC 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 337
EcoO65I GGTNACC 1 cut(s) 185
EcoRI GAATTC 2 cut(s) 382, 451
EcoT38I GRGCYC 1 cut(s) 602
FaeI CATG 1 cut(s) 639
FaiI YATR 6 cut(s) 30, 504, 548, 579, 584, 637
FatI CATG 1 cut(s) 635
FbaI TGATCA 1 cut(s) 120
FokI GGATG 4 cut(s) 4, 37, 407, 746
FriOI GRGCYC 1 cut(s) 602
HaeIII GGCC 3 cut(s) 254, 267, 526
HapII CCGG 3 cut(s) 222, 603, 712
Hin1II CATG 1 cut(s) 639
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 6 cut(s) 8, 62, 72, 110, 541, 646
HpaI GTTAAC 1 cut(s) 412
HpaII CCGG 3 cut(s) 222, 603, 712
HphI GGTGA 2 cut(s) 197, 695
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 8 cut(s) 77, 167, 250, 359, 397, 496, 589, 610
Hpy188III TCNNGA 5 cut(s) 85, 140, 650, 704, 780
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 3 cut(s) 64, 172, 682
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 3 cut(s) 561, 639, 699
HpyF3I CTNAG 6 cut(s) 249, 351, 356, 495, 609, 620
Hsp92II CATG 1 cut(s) 639
KpnI GGTACC 1 cut(s) 718
Ksp22I TGATCA 1 cut(s) 120
KspAI GTTAAC 1 cut(s) 412
Kzo9I GATC 2 cut(s) 120, 589
LmnI GCTCC 2 cut(s) 487, 605
LweI GCATC 1 cut(s) 429
MaeIII GTNAC 4 cut(s) 185, 326, 572, 629
MalI GATC 2 cut(s) 122, 591
MboI GATC 2 cut(s) 120, 589
MboII GAAGA 5 cut(s) 49, 180, 317, 655, 670
MhlI GDGCHC 1 cut(s) 602
MluCI AATT 7 cut(s) 115, 135, 313, 382, 439, 451, 613
MlyI GAGTC 2 cut(s) 56, 535
MmeI TCCRAC 2 cut(s) 220, 567
MnlI CCTC 4 cut(s) 71, 244, 490, 674
MseI TTAA 1 cut(s) 411
MspI CCGG 3 cut(s) 222, 603, 712
MspR9I CCNGG 2 cut(s) 222, 223
Mva1269I GAATGC 1 cut(s) 713
MvnI CGCG 1 cut(s) 86
NciI CCSGG 2 cut(s) 222, 223
NdeII GATC 2 cut(s) 120, 589
NlaIII CATG 1 cut(s) 639
NlaIV GGNNCC 1 cut(s) 716
NmeAIII GCCGAG 1 cut(s) 558
NmuCI GTSAC 1 cut(s) 185
NruI TCGCGA 1 cut(s) 86
NspI RCATGY 1 cut(s) 639
NspV TTCGAA 2 cut(s) 102, 449
PcsI WCGNNNNNNNCGW 1 cut(s) 593
PctI GAATGC 1 cut(s) 713
PfeI GAWTC 4 cut(s) 8, 72, 110, 646
PleI GAGTC 2 cut(s) 56, 535
PpsI GAGTC 2 cut(s) 56, 535
PpuMI RGGWCCY 1 cut(s) 337
Psp124BI GAGCTC 1 cut(s) 602
Psp5II RGGWCCY 1 cut(s) 337
PspEI GGTNACC 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 716
PspPI GGNCC 2 cut(s) 337, 524
PspPPI RGGWCCY 1 cut(s) 337
PstNI CAGNNNCTG 1 cut(s) 401
RruI TCGCGA 1 cut(s) 86
RsaI GTAC 1 cut(s) 716
RsaNI GTAC 1 cut(s) 715
SacI GAGCTC 1 cut(s) 602
SaqAI TTAA 1 cut(s) 411
Sau3AI GATC 2 cut(s) 120, 589
Sau96I GGNCC 2 cut(s) 337, 524
SchI GAGTC 2 cut(s) 56, 535
ScrFI CCNGG 2 cut(s) 222, 223
SduI GDGCHC 1 cut(s) 602
SetI ASST 6 cut(s) 339, 357, 492, 602, 626, 685
SfaNI GCATC 1 cut(s) 429
SfuI TTCGAA 2 cut(s) 102, 449
SinI GGWCC 1 cut(s) 337
SmaI CCCGGG 1 cut(s) 223
Sse9I AATT 7 cut(s) 115, 135, 313, 382, 439, 451, 613
SsiI CCGC 1 cut(s) 5
SstI GAGCTC 1 cut(s) 602
StyD4I CCNGG 2 cut(s) 220, 221
TaaI ACNGT 1 cut(s) 332
TaqI TCGA 4 cut(s) 60, 102, 449, 596
TasI AATT 7 cut(s) 115, 135, 313, 382, 439, 451, 613
TfiI GAWTC 4 cut(s) 8, 72, 110, 646
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 309, 750
TspMI CCCGGG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 337
XapI RAATTY 6 cut(s) 115, 313, 382, 439, 451, 613
XceI RCATGY 1 cut(s) 639
XmaI CCCGGG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.