pycom11g25670

glutathione peroxidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0013809
Physical Location & Seq
Reverse (-)
28421466 .. 28423879
2414 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 615 bp
ATGGGATTGATTGATGACCAACTGTCCAACCCTTTCCTCCTCCTCCTTCCTCCCACAGTTTCTCAGTTTACTGTTTTTCCTTGTAAAAAAATGGGTGGCTTCCAATCTGTCTCTGAGCAATCCATCCATGAATTCACAGTGAAGGATAGCAGAGGGAAGGAGGTGGACCTCAGCGTTTACAAGGGGAAGGTCGTCCTCGTCGTCAACGTTGCTTCCAAATGTGGGTTTACTGATACGAATTATACCCAGTTGACTGAGATTTACAGCAAATACAAAGAGAAAGGTTTTGAGATCTTGGCATTTCCGTGCAATCAGTTTCTAAAGCAAGAGCCCGGGACAAGTCAGGATGCTGAACAATTTGCATGTACAAGATACAAGGCTGAATATCCAATATTCAAGAAGGTACGTGTCAATGGGCCGGATACAGAACCTGTGTACAAATTCCTCAAAGCAAGTAAATCTGGATTTCTGGGGAATAGCATAAAGTGGAACTTCACCAAGTTCTTAGTTGACAAGGATGGACATGTAATTGAACGGTACGCCCCAACCACCTCCCCCTTGAGCATTGAGGCAGTTCATCTTCAGACAATGGTGAAAGAGCATAGCAGTTCTTAG

Protein Analysis

205

Amino Acids

22.99

Weight (kDa)

8.55

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 40 - 128 1.1e-07 Redoxin
AhpC-TSA PF00578 41 - 105 4.9e-08 AhpC/TSA family
GSHPx PF00255 42 - 150 2.3e-40 Glutathione peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013809)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48150 AT2G48150 AT3G63080
fragaria_vesca FvH4_2g23900
malus_domestica MD03G1268500.v1.1 MD11G1289300.v1.1
prunus_persica Prupe.8G244300_v2.0.a1
pyrus_communis pycom11g25670
rosa_chinensis RchiOBHm_Chr6g0291511
rosa_laevigata RLG00000012110
rosa_multiflora Rmu_sc0026626.1_g000001
rosa_roxburghii Rroxscaffold_7G00176010
rosa_rugosa Rorug06G0220100
rosa_samantha Rh6AG332200 Rh6BG339100 Rh6CG345300 Rh6DG332700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 207
AcsI RAATTY 2 cut(s) 131, 440
AcuI CTGAAG 1 cut(s) 566
AfaI GTAC 4 cut(s) 367, 405, 437, 539
AfiI CCNNNNNNNGG 1 cut(s) 222
AflIII ACRYGT 2 cut(s) 406, 523
AgsI TTSAA 2 cut(s) 397, 533
AhdI GACNNNNNGTC 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 115
AlwNI CAGNNNCTG 1 cut(s) 431
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 1 cut(s) 416
ApoI RAATTY 2 cut(s) 131, 440
AspS9I GGNCC 2 cut(s) 166, 416
AsuC2I CCSGG 2 cut(s) 333, 334
AsuHPI GGTGA 2 cut(s) 487, 604
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 170
BccI CCATC 2 cut(s) 131, 512
BciVI GTATCC 1 cut(s) 415
BcnI CCSGG 2 cut(s) 333, 334
BcoDI GTCTC 1 cut(s) 115
BfuI GTATCC 1 cut(s) 415
BglII AGATCT 1 cut(s) 291
Bme1390I CCNGG 2 cut(s) 333, 334
Bme18I GGWCC 1 cut(s) 166
BmeRI GACNNNNNGTC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 166, 416
BmrFI CCNGG 2 cut(s) 333, 334
BmrI ACTGGG 1 cut(s) 241
BmsI GCATC 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 241
Bpu10I CCTNAGC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 580
BpuMI CCSGG 2 cut(s) 333, 334
BsaAI YACGTR 1 cut(s) 407
BsaJI CCNNGG 1 cut(s) 332
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 332
BseGI GGATG 3 cut(s) 123, 352, 523
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 4 cut(s) 77, 105, 184, 246
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 2 cut(s) 29, 32
BshFI GGCC 1 cut(s) 418
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 2 cut(s) 333, 419
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 1 cut(s) 418
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 333
Bsp1407I TGTACA 2 cut(s) 365, 435
Bsp143I GATC 1 cut(s) 291
BspANI GGCC 1 cut(s) 418
BspCNI CTCAG 4 cut(s) 76, 106, 183, 247
BsrGI TGTACA 2 cut(s) 365, 435
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 1 cut(s) 291
Bst4CI ACNGT 5 cut(s) 24, 58, 73, 139, 537
BstAUI TGTACA 2 cut(s) 365, 435
BstBAI YACGTR 1 cut(s) 407
BstDEI CTNAG 6 cut(s) 63, 114, 170, 255, 505, 612
BstF5I GGATG 3 cut(s) 123, 352, 523
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 1 cut(s) 291
BstNSI RCATGY 2 cut(s) 366, 527
BstSCI CCNGG 2 cut(s) 331, 332
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BsuI GTATCC 1 cut(s) 415
BsuRI GGCC 1 cut(s) 418
BtsCI GGATG 3 cut(s) 123, 352, 523
BtsIMutI CAGTG 1 cut(s) 144
CaiI CAGNNNCTG 1 cut(s) 431
Cfr13I GGNCC 2 cut(s) 166, 416
Cfr9I CCCGGG 1 cut(s) 332
Csp6I GTAC 4 cut(s) 366, 404, 436, 538
CviAII CATG 3 cut(s) 128, 363, 524
CviJI RGCY 4 cut(s) 99, 331, 380, 418
CviKI_1 RGCY 4 cut(s) 99, 331, 380, 418
CviQI GTAC 4 cut(s) 366, 404, 436, 538
DdeI CTNAG 6 cut(s) 63, 114, 170, 255, 505, 612
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
DriI GACNNNNNGTC 1 cut(s) 22
Eam1105I GACNNNNNGTC 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 566
Eco88I CYCGRG 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 333
FaeI CATG 3 cut(s) 131, 366, 527
FaiI YATR 6 cut(s) 129, 243, 364, 482, 525, 603
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FaqI GGGAC 1 cut(s) 349
FatI CATG 3 cut(s) 127, 362, 523
FokI GGATG 3 cut(s) 110, 359, 530
FriOI GRGCYC 1 cut(s) 333
HaeIII GGCC 1 cut(s) 418
HapII CCGG 2 cut(s) 333, 419
Hin1II CATG 3 cut(s) 131, 366, 527
HincII GTYRAC 3 cut(s) 205, 252, 511
HindII GTYRAC 3 cut(s) 205, 252, 511
HpaII CCGG 2 cut(s) 333, 419
HphI GGTGA 2 cut(s) 487, 604
Hpy166II GTNNAC 8 cut(s) 69, 166, 178, 205, 228, 252, 436, 511
Hpy188I TCNGA 2 cut(s) 115, 585
Hpy188III TCNNGA 3 cut(s) 344, 397, 462
Hpy8I GTNNAC 8 cut(s) 69, 166, 178, 205, 228, 252, 436, 511
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 5 cut(s) 56, 136, 151, 181, 394
HpyCH4III ACNGT 5 cut(s) 24, 58, 73, 139, 537
HpyCH4IV ACGT 2 cut(s) 207, 406
HpyCH4V TGCA 2 cut(s) 309, 362
HpyF3I CTNAG 6 cut(s) 63, 114, 170, 255, 505, 612
HpySE526I ACGT 2 cut(s) 207, 406
Hsp92II CATG 3 cut(s) 131, 366, 527
Kzo9I GATC 1 cut(s) 291
LpnPI CCDG 7 cut(s) 260, 329, 346, 432, 444, 447, 455
LweI GCATC 1 cut(s) 337
MaeII ACGT 2 cut(s) 207, 406
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 1 cut(s) 572
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 5 cut(s) 131, 238, 356, 440, 528
MmeI TCCRAC 1 cut(s) 51
MslI CAYNNNNRTG 1 cut(s) 304
MspI CCGG 2 cut(s) 333, 419
MspR9I CCNGG 2 cut(s) 333, 334
NciI CCSGG 2 cut(s) 333, 334
NdeII GATC 1 cut(s) 291
NlaIII CATG 3 cut(s) 131, 366, 527
NspI RCATGY 2 cut(s) 366, 527
PciI ACATGT 1 cut(s) 523
PcsI WCGNNNNNNNCGW 2 cut(s) 198, 204
Ppu21I YACGTR 1 cut(s) 407
PscI ACATGT 1 cut(s) 523
Psp1406I AACGTT 1 cut(s) 207
PspPI GGNCC 2 cut(s) 166, 416
PstNI CAGNNNCTG 1 cut(s) 431
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 4 cut(s) 367, 405, 437, 539
RsaNI GTAC 4 cut(s) 366, 404, 436, 538
RseI CAYNNNNRTG 1 cut(s) 304
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 2 cut(s) 166, 416
ScrFI CCNGG 2 cut(s) 333, 334
SduI GDGCHC 1 cut(s) 333
SetI ASST 9 cut(s) 165, 171, 192, 210, 286, 405, 409, 433, 554
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 1 cut(s) 166
SmaI CCCGGG 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
Sse9I AATT 5 cut(s) 131, 238, 356, 440, 528
SspI AATATT 1 cut(s) 393
StyD4I CCNGG 2 cut(s) 331, 332
TaaI ACNGT 5 cut(s) 24, 58, 73, 139, 537
TaiI ACGT 2 cut(s) 210, 409
TasI AATT 5 cut(s) 131, 238, 356, 440, 528
TatI WGTACW 2 cut(s) 365, 435
TscAI CASTG 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 144, 566
TspGWI ACGGA 1 cut(s) 294
TspMI CCCGGG 1 cut(s) 332
TspRI CASTG 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 2 cut(s) 131, 440
XceI RCATGY 2 cut(s) 366, 527
XmaI CCCGGG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.