Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0014356

Physical Location & Seq

Genomic Coordinates Forward (+)

29151108 .. 29151530

Gene Structure 423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGATAATTATTCCGACCACCTCAAGCAACGCAGGACAGAGGATCCTGCCGCCGCCGCTGCCGGGAAGAAGAGCGGTTACAGAAGCAAAAAGGACATGAGAATGGACATGGCCAAACGCGGCCTTAGGTCCTTAGCCGTGGCCGTCGCAATCCCCGTCTCTCTCCACCTCATCGCTATCTACGCAGGCTCATCCGACCCCTACCGCGTCGGATCCAAGCCCTTCTGGATCCCTCCCTTGTGGGCCCTGCGGTTAACCTGCATGGCCTCCAGCTTCCTCATGGGCCTGGCCGCTTGGTTAGTGTGGGCCGAAGGTGGATTCCATAAGAACCCGATGGCTCTGCCCATTTACTTGGCCCAGCTAGGGTTGAGCTTGATTTGGGATCGATTGTGTTCGGGGCGGGGGCTCCGTGGGTCGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

141

Amino Acids

15.38

Weight (kDa)

10.07

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TspO_MBR	PF03073	49 - 132	7.8e-15	TspO/MBR family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47770
fragaria_vesca	FvH4_2g25400
malus_domestica	MD03G1285300.v1.1 MD11G1304700.v1.1
prunus_persica	Prupe.8G258500_v2.0.a1
pyrus_communis	pycom03g22620 pycom11g26650
rosa_chinensis	RchiOBHm_Chr6g0293581
rosa_laevigata	RLG00000011939
rosa_multiflora	Rmu_sc0006269.1_g000004
rosa_roxburghii	Rroxscaffold_7G00174070
rosa_rugosa	Rorug06G0236800
rosa_samantha	Rh6AG349400 Rh6BG356800 Rh6CG363500 Rh6DG350400
rosa_wichuraiana	Rw6G030400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	266
AccBSI	CCGCTC	1 cut(s)	75
AccII	CGCG	2 cut(s)	120, 207
AciI	CCGC	9 cut(s)	51, 54, 57, 75, 120, 205, 250, 291, 400
AclWI	GGATC	7 cut(s)	38, 51, 207, 220, 223, 236, 390
AcoI	YGGCCR	3 cut(s)	111, 141, 288
AfiI	CCNNNNNNNGG	3 cut(s)	63, 363, 415
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	3 cut(s)	273, 361, 372
AluI	AGCT	3 cut(s)	273, 361, 372
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	7 cut(s)	38, 51, 207, 220, 223, 236, 390
AoxI	GGCC	9 cut(s)	111, 121, 141, 243, 264, 283, 288, 306, 354
ApaI	GGGCCC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	59
AspS9I	GGNCC	6 cut(s)	129, 243, 244, 283, 306, 355
AsuC2I	CCSGG	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	129
AxyI	CCTNAGG	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	247
BalI	TGGCCA	1 cut(s)	113
BamHI	GGATCC	3 cut(s)	43, 212, 228
BanII	GRGCYC	2 cut(s)	247, 408
BarI	GAAGNNNNNNTAC	2 cut(s)	62, 94
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	328
BceAI	ACGGC	2 cut(s)	122, 128
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciT130I	CCWGG	1 cut(s)	287
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	362
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	6 cut(s)	51, 54, 57, 60, 121, 291
BlsI	GCNGC	6 cut(s)	52, 55, 58, 61, 122, 292
Bme1390I	CCNGG	2 cut(s)	64, 287
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	6 cut(s)	129, 243, 244, 283, 306, 355
BmiI	GGNNCC	5 cut(s)	45, 214, 230, 245, 407
BmrFI	CCNGG	2 cut(s)	64, 287
BpmI	CTGGAG	1 cut(s)	253
Bpu10I	CCTNAGC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	64
Bsa29I	ATCGAT	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	138, 409
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 363, 415
Bse21I	CCTNAGG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	287
BseCI	ATCGAT	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	138, 409
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	3 cut(s)	63, 363, 415
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	46
BseYI	CCCAGC	1 cut(s)	357
Bsh1236I	CGCG	2 cut(s)	120, 207
BshFI	GGCC	9 cut(s)	113, 123, 143, 245, 266, 285, 290, 308, 356
BshVI	ATCGAT	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	63, 363, 415
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsnI	GGCC	9 cut(s)	113, 123, 143, 245, 266, 285, 290, 308, 356
Bsp120I	GGGCCC	1 cut(s)	243
Bsp1286I	GDGCHC	2 cut(s)	247, 408
Bsp143I	GATC	4 cut(s)	43, 212, 228, 382
BspACI	CCGC	9 cut(s)	51, 54, 57, 75, 120, 205, 250, 291, 400
BspANI	GGCC	9 cut(s)	113, 123, 143, 245, 266, 285, 290, 308, 356
BspDI	ATCGAT	1 cut(s)	385
BspFNI	CGCG	2 cut(s)	120, 207
BspLI	GGNNCC	5 cut(s)	45, 214, 230, 245, 407
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	7 cut(s)	38, 51, 207, 220, 223, 236, 390
BspQI	GCTCTTC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	138, 409
BssMI	GATC	4 cut(s)	43, 212, 228, 382
Bst2UI	CCWGG	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	125, 133
BstDSI	CCRYGG	2 cut(s)	138, 409
BstF5I	GGATG	1 cut(s)	191
BstFNI	CGCG	2 cut(s)	120, 207
BstKTI	GATC	4 cut(s)	46, 215, 231, 385
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	4 cut(s)	43, 212, 228, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 59, 182
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	62, 285
BstSLI	GKGCMC	1 cut(s)	247
BstUI	CGCG	2 cut(s)	120, 207
BstV1I	GCAGC	1 cut(s)	46
BstX2I	RGATCY	3 cut(s)	43, 212, 228
BstXI	CCANNNNNNTGG	1 cut(s)	352
BstYI	RGATCY	3 cut(s)	43, 212, 228
Bsu15I	ATCGAT	1 cut(s)	385
Bsu36I	CCTNAGG	1 cut(s)	125
BsuRI	GGCC	9 cut(s)	113, 123, 143, 245, 266, 285, 290, 308, 356
BsuTUI	ATCGAT	1 cut(s)	385
BtgI	CCRYGG	2 cut(s)	138, 409
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	191
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	187
Cfr13I	GGNCC	6 cut(s)	129, 243, 244, 283, 306, 355
ClaI	ATCGAT	1 cut(s)	385
CseI	GACGC	1 cut(s)	196
CviAII	CATG	4 cut(s)	97, 109, 262, 280
DdeI	CTNAG	2 cut(s)	125, 133
DpnI	GATC	4 cut(s)	45, 214, 230, 384
DpnII	GATC	4 cut(s)	43, 212, 228, 382
EaeI	YGGCCR	3 cut(s)	111, 141, 288
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco24I	GRGCYC	2 cut(s)	247, 408
Eco47I	GGWCC	1 cut(s)	129
Eco81I	CCTNAGG	1 cut(s)	125
EcoO109I	RGGNCCY	2 cut(s)	129, 244
EcoRII	CCWGG	1 cut(s)	285
EcoT38I	GRGCYC	2 cut(s)	247, 408
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	4 cut(s)	100, 112, 265, 283
FaiI	YATR	5 cut(s)	98, 110, 263, 281, 324
FatI	CATG	4 cut(s)	96, 108, 261, 279
FauI	CCCGC	1 cut(s)	393
Fnu4HI	GCNGC	6 cut(s)	51, 54, 57, 60, 121, 291
FokI	GGATG	1 cut(s)	178
FriOI	GRGCYC	2 cut(s)	247, 408
Fsp4HI	GCNGC	6 cut(s)	51, 54, 57, 60, 121, 291
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	6 cut(s)	51, 54, 57, 60, 121, 291
GsaI	CCCAGC	1 cut(s)	361
GsuI	CTGGAG	1 cut(s)	253
HaeIII	GGCC	9 cut(s)	113, 123, 143, 245, 266, 285, 290, 308, 356
HapII	CCGG	1 cut(s)	63
HgaI	GACGC	1 cut(s)	196
Hin1II	CATG	4 cut(s)	100, 112, 265, 283
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HinfI	GANTC	1 cut(s)	318
HpaI	GTTAAC	1 cut(s)	255
HpaII	CCGG	1 cut(s)	63
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	3 cut(s)	16, 196, 212
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	1 cut(s)	255
Hpy99I	CGWCG	2 cut(s)	149, 212
HpyAV	CCTTC	2 cut(s)	232, 305
HpyCH4V	TGCA	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 59, 182
HpyF3I	CTNAG	2 cut(s)	125, 133
Hsp92II	CATG	4 cut(s)	100, 112, 265, 283
KspAI	GTTAAC	1 cut(s)	255
Kzo9I	GATC	4 cut(s)	43, 212, 228, 382
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	362
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	4 cut(s)	45, 214, 230, 384
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	4 cut(s)	43, 212, 228, 382
MboII	GAAGA	2 cut(s)	79, 82
MflI	RGATCY	3 cut(s)	43, 212, 228
MhlI	GDGCHC	2 cut(s)	247, 408
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	113
MmeI	TCCRAC	3 cut(s)	39, 190, 219
MnlI	CCTC	6 cut(s)	32, 34, 179, 243, 277, 287
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	101
Msp20I	TGGCCA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	2 cut(s)	64, 287
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	2 cut(s)	120, 207
MwoI	GCNNNNNNNGC	3 cut(s)	56, 59, 182
NciI	CCSGG	1 cut(s)	64
NdeII	GATC	4 cut(s)	43, 212, 228, 382
NlaIII	CATG	4 cut(s)	100, 112, 265, 283
NlaIV	GGNNCC	5 cut(s)	45, 214, 230, 245, 407
PciSI	GCTCTTC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	318
PkrI	GCNGC	6 cut(s)	52, 55, 58, 61, 122, 292
PpuMI	RGGWCCY	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	285
PspFI	CCCAGC	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	5 cut(s)	45, 214, 230, 245, 407
PspOMI	GGGCCC	1 cut(s)	243
PspPI	GGNCC	6 cut(s)	129, 243, 244, 283, 306, 355
PspPPI	RGGWCCY	1 cut(s)	129
PsuI	RGATCY	3 cut(s)	43, 212, 228
RseI	CAYNNNNRTG	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	6 cut(s)	51, 54, 57, 60, 121, 291
Sau3AI	GATC	4 cut(s)	43, 212, 228, 382
Sau96I	GGNCC	6 cut(s)	129, 243, 244, 283, 306, 355
ScrFI	CCNGG	2 cut(s)	64, 287
SduI	GDGCHC	2 cut(s)	247, 408
SetI	ASST	8 cut(s)	24, 131, 171, 260, 275, 316, 363, 374
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	9 cut(s)	51, 54, 57, 75, 120, 205, 250, 291, 400
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	2 cut(s)	62, 285
TaqI	TCGA	1 cut(s)	385
TasI	AATT	1 cut(s)	7
TauI	GCSGC	5 cut(s)	53, 56, 59, 123, 293
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseI	GCWGC	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.