pycom11g27760

Forkhead associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0004815
Physical Location & Seq
Forward (+)
29940960 .. 29950617
9658 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 894 bp
ATGGTTTGGGGTTTCTTCCCTACCGACTCTCTCTCAGGTGAAGATAAATACTATATCTTTGCAAGGGGGACGTACAAAGTGGGTCGGAAAGGTTGTGATGTAAATATCACTAAAGATAAAGGAGTTTCTCGGGTTCATGCAGAAATAGTTGTTGATGCAATGATTGCCCCTCTTCCCCTGCAAACAAAATCTTCTATATTATCTTCCAAAGTTCGAATTAGAGATTGCTCAAAATATGGAACATATATTAACAAGAACCTTACATCAATGGAAAAGATTCATGAGTTACCCAATAGAGAAACATCGTTAAGGCAAGGAGACTTGGTTTCATTTGGAACTGGCAATGCAATCTACAGATTTTCCTTTGTTCCACTCATTTTCTTTGCGTGCTGCTCGGAACCAACCCAAGTGAATCACCCCCTTGAAGATAAACTTTCATCAATTGGTGCTCATGTCACTTATCATCTAAATCAGGAGTGCACACATGTCCTTGTTGACCAACTCATGCCAGTGAAAGAAGATATAGTGGATGCTATTGTGGCAAAGAAACCTATTGTTCTTGGTAGTTGGGTTGAGTTTCTTGCAGAAAAAAACATTCGCAATGAGCTTCCTGGGTGTGAATCCTTTGCTCCAACACTAACAGTGGAAGGAGTATCAGTCAAACTTACAGATCCGAAAACTCGTGAAAACTGTTTAGAAGGATACACGTTTTTGTTGGACTCCAAACCTGTGTATAAATTCATGGATCGCTTGTGGTCCTTACTGGAAGTGAGTGGTGCAAAGATACTTTCCATTGATGGGTTTAATTTGAAGAGCCAAAGCTCAGTTTGTGGAGAAAATCGATCGTGTTGTATGTGTTATCCCAGAACGATTATCAGATGCTGGGTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007095 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007346 GO:0008134 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016233 GO:0016234 GO:0022402 GO:0022414 GO:0023052 GO:0030870 GO:0031570 GO:0031572 GO:0031974 GO:0031981 GO:0032200 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0035825 GO:0042127 GO:0042405 GO:0042592 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0046483 GO:0047485 GO:0048145 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0051726 GO:0060249 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0071103 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0104004 GO:0140013 GO:1901360 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko04218 map03440 map04218
Pfam Domains
Protein Families
BRCT FHA

Protein Analysis

298

Amino Acids

33.36

Weight (kDa)

7.92

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FHA PF00498 25 - 112 5.1e-10 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 665, 753
AcsI RAATTY 1 cut(s) 737
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 798
AflIII ACRYGT 2 cut(s) 484, 705
AgsI TTSAA 3 cut(s) 425, 811, 890
AjnI CCWGG 1 cut(s) 610
AluBI AGCT 2 cut(s) 607, 822
AluI AGCT 2 cut(s) 607, 822
Alw21I GWGCWC 2 cut(s) 451, 482
Alw26I GTCTC 1 cut(s) 312
Alw44I GTGCAC 1 cut(s) 478
AlwI GGATC 2 cut(s) 665, 753
AlwNI CAGNNNCTG 1 cut(s) 882
Ama87I CYCGRG 1 cut(s) 129
ApaLI GTGCAC 1 cut(s) 478
ApeKI GCWGC 1 cut(s) 390
ApoI RAATTY 1 cut(s) 737
Asp700I GAANNNNTTC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 756
AsuHPI GGTGA 2 cut(s) 50, 407
AsuII TTCGAA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 756
BaeGI GKGCMC 1 cut(s) 482
BauI CACGAG 1 cut(s) 681
Bbv12I GWGCWC 2 cut(s) 451, 482
BbvI GCAGC 1 cut(s) 377
BccI CCATC 1 cut(s) 791
BciT130I CCWGG 1 cut(s) 612
BciVI GTATCC 1 cut(s) 695
BcoDI GTCTC 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 352
BfuI GTATCC 1 cut(s) 695
BisI GCNGC 1 cut(s) 391
BlsI GCNGC 1 cut(s) 392
Bme1390I CCNGG 1 cut(s) 612
Bme18I GGWCC 1 cut(s) 756
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 756
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 612
BmsI GCATC 3 cut(s) 145, 520, 869
Bpu14I TTCGAA 1 cut(s) 214
Bsa29I ATCGAT 1 cut(s) 841
BsaJI CCNNGG 1 cut(s) 611
BsaXI ACNNNNNCTCC 4 cut(s) 309, 339, 642, 672
Bsc4I CCNNNNNNNGG 1 cut(s) 798
Bse1I ACTGG 3 cut(s) 343, 509, 768
Bse3DI GCAATG 3 cut(s) 165, 349, 607
BseBI CCWGG 1 cut(s) 612
BseCI ATCGAT 1 cut(s) 841
BseDI CCNNGG 1 cut(s) 611
BseGI GGATG 1 cut(s) 535
BseLI CCNNNNNNNGG 1 cut(s) 798
BseMI GCAATG 3 cut(s) 165, 349, 607
BseMII CTCAG 2 cut(s) 48, 837
BseNI ACTGG 3 cut(s) 343, 509, 768
BseSI GKGCMC 1 cut(s) 482
BseXI GCAGC 1 cut(s) 377
BseYI CCCAGC 1 cut(s) 882
Bsh1285I CGRYCG 1 cut(s) 845
BshVI ATCGAT 1 cut(s) 841
BsiEI CGRYCG 1 cut(s) 845
BsiHKAI GWGCWC 2 cut(s) 451, 482
BsiHKCI CYCGRG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 798
BsmAI GTCTC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 129
Bsp119I TTCGAA 1 cut(s) 214
Bsp1286I GDGCHC 2 cut(s) 451, 482
Bsp143I GATC 3 cut(s) 670, 745, 842
BspCNI CTCAG 2 cut(s) 47, 836
BspDI ATCGAT 1 cut(s) 841
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 399
BspPI GGATC 2 cut(s) 665, 753
BspQI GCTCTTC 1 cut(s) 806
BspT104I TTCGAA 1 cut(s) 214
BsrDI GCAATG 3 cut(s) 165, 349, 607
BsrI ACTGG 3 cut(s) 343, 509, 768
BssECI CCNNGG 1 cut(s) 611
BssMI GATC 3 cut(s) 670, 745, 842
BssSI CACGAG 1 cut(s) 681
Bst2BI CACGAG 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 2 cut(s) 643, 692
Bst6I CTCTTC 2 cut(s) 177, 806
BstAPI GCANNNNNTGC 1 cut(s) 164
BstBI TTCGAA 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 388
BstDEI CTNAG 2 cut(s) 34, 823
BstF5I GGATG 1 cut(s) 535
BstKTI GATC 3 cut(s) 673, 748, 845
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 3 cut(s) 670, 745, 842
BstMCI CGRYCG 1 cut(s) 845
BstMWI GCNNNNNNNGC 2 cut(s) 164, 539
BstNI CCWGG 1 cut(s) 612
BstNSI RCATGY 1 cut(s) 488
BstSCI CCNGG 1 cut(s) 610
BstSFI CTRYAG 1 cut(s) 352
BstSLI GKGCMC 1 cut(s) 482
BstV1I GCAGC 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
Bsu15I ATCGAT 1 cut(s) 841
BsuI GTATCC 1 cut(s) 695
BsuTUI ATCGAT 1 cut(s) 841
BtsCI GGATG 1 cut(s) 535
BtsIMutI CAGTG 2 cut(s) 516, 648
Cac8I GCNNGC 1 cut(s) 388
CaiI CAGNNNCTG 1 cut(s) 882
CciI TCATGA 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 756
ClaI ATCGAT 1 cut(s) 841
Csp6I GTAC 1 cut(s) 73
CviAII CATG 6 cut(s) 137, 281, 452, 485, 505, 742
CviJI RGCY 3 cut(s) 607, 816, 822
CviKI_1 RGCY 3 cut(s) 607, 816, 822
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 2 cut(s) 34, 823
DpnI GATC 3 cut(s) 672, 747, 844
DpnII GATC 3 cut(s) 670, 745, 842
Eam1104I CTCTTC 2 cut(s) 177, 806
EarI CTCTTC 2 cut(s) 177, 806
Eco47I GGWCC 1 cut(s) 756
Eco88I CYCGRG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 610
FaeI CATG 6 cut(s) 140, 284, 455, 488, 508, 745
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 1 cut(s) 82
FatI CATG 6 cut(s) 136, 280, 451, 484, 504, 741
Fnu4HI GCNGC 1 cut(s) 391
FokI GGATG 1 cut(s) 542
Fsp4HI GCNGC 1 cut(s) 391
GluI GCNGC 1 cut(s) 391
GsaI CCCAGC 1 cut(s) 886
Hin1II CATG 6 cut(s) 140, 284, 455, 488, 508, 745
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 5 cut(s) 26, 277, 412, 620, 719
HphI GGTGA 2 cut(s) 50, 407
Hpy166II GTNNAC 2 cut(s) 480, 496
Hpy188I TCNGA 4 cut(s) 87, 397, 675, 878
Hpy188III TCNNGA 3 cut(s) 281, 473, 683
Hpy8I GTNNAC 2 cut(s) 480, 496
HpyAV CCTTC 2 cut(s) 641, 692
HpyCH4III ACNGT 2 cut(s) 643, 692
HpyCH4IV ACGT 2 cut(s) 71, 707
HpyCH4V TGCA 8 cut(s) 62, 140, 158, 181, 347, 480, 584, 779
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 539
HpyF3I CTNAG 2 cut(s) 34, 823
HpySE526I ACGT 2 cut(s) 71, 707
Hsp92II CATG 6 cut(s) 140, 284, 455, 488, 508, 745
Kzo9I GATC 3 cut(s) 670, 745, 842
LguI GCTCTTC 1 cut(s) 806
LmnI GCTCC 1 cut(s) 634
Lsp1109I GCAGC 1 cut(s) 377
LweI GCATC 3 cut(s) 145, 520, 869
MaeII ACGT 2 cut(s) 71, 707
MaeIII GTNAC 2 cut(s) 285, 454
MalI GATC 3 cut(s) 672, 747, 844
MboI GATC 3 cut(s) 670, 745, 842
MboII GAAGA 8 cut(s) 7, 53, 164, 183, 195, 437, 530, 823
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 2 cut(s) 451, 482
MluCI AATT 4 cut(s) 216, 441, 737, 805
MlyI GAGTC 2 cut(s) 20, 713
MmeI TCCRAC 3 cut(s) 65, 656, 696
MnlI CCTC 1 cut(s) 180
MroXI GAANNNNTTC 1 cut(s) 276
MseI TTAA 3 cut(s) 249, 308, 804
MslI CAYNNNNRTG 1 cut(s) 509
MspR9I CCNGG 1 cut(s) 612
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 612
MwoI GCNNNNNNNGC 2 cut(s) 164, 539
NdeII GATC 3 cut(s) 670, 745, 842
NlaIII CATG 6 cut(s) 140, 284, 455, 488, 508, 745
NlaIV GGNNCC 1 cut(s) 399
NmuCI GTSAC 1 cut(s) 454
NspI RCATGY 1 cut(s) 488
NspV TTCGAA 1 cut(s) 214
PagI TCATGA 1 cut(s) 280
PciI ACATGT 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 806
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 3 cut(s) 277, 412, 620
PkrI GCNGC 1 cut(s) 392
Ple19I CGATCG 1 cut(s) 845
PleI GAGTC 2 cut(s) 20, 713
PpsI GAGTC 2 cut(s) 20, 713
PscI ACATGT 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 882
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 1 cut(s) 399
PspPI GGNCC 1 cut(s) 756
PstNI CAGNNNCTG 1 cut(s) 882
PsuI RGATCY 1 cut(s) 670
PvuI CGATCG 1 cut(s) 845
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 509
SapI GCTCTTC 1 cut(s) 806
SaqAI TTAA 3 cut(s) 249, 308, 804
SatI GCNGC 1 cut(s) 391
Sau3AI GATC 3 cut(s) 670, 745, 842
Sau96I GGNCC 1 cut(s) 756
SchI GAGTC 2 cut(s) 20, 713
ScrFI CCNGG 1 cut(s) 612
SduI GDGCHC 2 cut(s) 451, 482
SetI ASST 9 cut(s) 40, 74, 94, 261, 553, 609, 710, 730, 824
SfaNI GCATC 3 cut(s) 145, 520, 869
SfcI CTRYAG 1 cut(s) 352
SfuI TTCGAA 1 cut(s) 214
SinI GGWCC 1 cut(s) 756
SmiMI CAYNNNNRTG 1 cut(s) 509
Sse9I AATT 4 cut(s) 216, 441, 737, 805
StyD4I CCNGG 1 cut(s) 610
TaaI ACNGT 2 cut(s) 643, 692
TaiI ACGT 2 cut(s) 74, 710
TaqI TCGA 2 cut(s) 214, 841
TasI AATT 4 cut(s) 216, 441, 737, 805
TfiI GAWTC 3 cut(s) 277, 412, 620
Tru1I TTAA 3 cut(s) 249, 308, 804
Tru9I TTAA 3 cut(s) 249, 308, 804
TscAI CASTG 2 cut(s) 516, 648
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 1 cut(s) 390
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 5 cut(s) 125, 269, 318, 426, 730
TspRI CASTG 2 cut(s) 516, 648
VneI GTGCAC 1 cut(s) 478
VpaK11BI GGWCC 1 cut(s) 756
XapI RAATTY 1 cut(s) 737
XceI RCATGY 1 cut(s) 488
XmnI GAANNNNTTC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.