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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom01g23990 pycom02g19350 pycom02g25450 pycom05g07880 pycom10g07480 pycom12424g00170 pycom12g09610 pycom13g23310 pycom13g26420 pycom13g28330 pycom15g26760 pycom17g17370 pycom520g00990 pycom520g01000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 236, 3194 |
| AatII | GACGTC | 1 cut(s) | 675 |
| AccB1I | GGYRCC | 1 cut(s) | 1757 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2885, 3528 |
| AccBSI | CCGCTC | 1 cut(s) | 52 |
| AccII | CGCG | 1 cut(s) | 260 |
| AciI | CCGC | 5 cut(s) | 52, 2026, 2214, 2357, 2919 |
| AclWI | GGATC | 7 cut(s) | 508, 845, 1577, 1860, 1873, 2476, 2996 |
| AcoI | YGGCCR | 3 cut(s) | 154, 377, 2675 |
| AcsI | RAATTY | 4 cut(s) | 485, 1165, 1920, 3089 |
| AcuI | CTGAAG | 3 cut(s) | 855, 940, 2830 |
| AcyI | GRCGYC | 4 cut(s) | 170, 672, 1596, 2154 |
| AdeI | CACNNNGTG | 1 cut(s) | 375 |
| AflIII | ACRYGT | 2 cut(s) | 2067, 3443 |
| AhlI | ACTAGT | 1 cut(s) | 2494 |
| AjiI | CACGTC | 1 cut(s) | 3444 |
| AjnI | CCWGG | 1 cut(s) | 2074 |
| AleI | CACNNNNGTG | 2 cut(s) | 2382, 2497 |
| Alw21I | GWGCWC | 3 cut(s) | 740, 2104, 3485 |
| Alw26I | GTCTC | 3 cut(s) | 456, 1295, 3202 |
| AlwI | GGATC | 7 cut(s) | 508, 845, 1577, 1860, 1873, 2476, 2996 |
| AoxI | GGCC | 9 cut(s) | 4, 154, 377, 573, 1872, 1941, 2130, 2675, 2947 |
| ApeKI | GCWGC | 6 cut(s) | 791, 1473, 1494, 1715, 2059, 2211 |
| ApoI | RAATTY | 4 cut(s) | 485, 1165, 1920, 3089 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 216 |
| AspA2I | CCTAGG | 1 cut(s) | 728 |
| AspLEI | GCGC | 2 cut(s) | 260, 791 |
| AspS9I | GGNCC | 9 cut(s) | 4, 54, 861, 1348, 1941, 2130, 2948, 3106, 3611 |
| AsuHPI | GGTGA | 6 cut(s) | 178, 1941, 2074, 2209, 2634, 2713 |
| AvaII | GGWCC | 5 cut(s) | 54, 861, 1348, 3106, 3611 |
| AvrII | CCTAGG | 1 cut(s) | 728 |
| AxyI | CCTNAGG | 1 cut(s) | 2116 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2597, 2630 |
| BalI | TGGCCA | 3 cut(s) | 156, 379, 2677 |
| BamHI | GGATCC | 1 cut(s) | 1865 |
| BanI | GGYRCC | 1 cut(s) | 1757 |
| BanII | GRGCYC | 3 cut(s) | 740, 3132, 3522 |
| BauI | CACGAG | 3 cut(s) | 2252, 3066, 3368 |
| BbsI | GAAGAC | 4 cut(s) | 765, 1007, 1128, 2508 |
| Bbv12I | GWGCWC | 3 cut(s) | 740, 2104, 3485 |
| BbvI | GCAGC | 6 cut(s) | 803, 1485, 1506, 1727, 2071, 2223 |
| BceAI | ACGGC | 3 cut(s) | 1677, 1949, 2529 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 2233, 2267, 2341, 2375, 3442, 3476 |
| BciT130I | CCWGG | 1 cut(s) | 2076 |
| BclI | TGATCA | 1 cut(s) | 1152 |
| BcoDI | GTCTC | 3 cut(s) | 456, 1295, 3202 |
| BcuI | ACTAGT | 1 cut(s) | 2494 |
| BfmI | CTRYAG | 1 cut(s) | 3072 |
| BglII | AGATCT | 2 cut(s) | 26, 2758 |
| BisI | GCNGC | 6 cut(s) | 792, 1474, 1495, 1716, 2060, 2212 |
| BlnI | CCTAGG | 1 cut(s) | 728 |
| BlsI | GCNGC | 6 cut(s) | 793, 1475, 1496, 1717, 2061, 2213 |
| BmcAI | AGTACT | 1 cut(s) | 2250 |
| Bme1390I | CCNGG | 1 cut(s) | 2076 |
| Bme18I | GGWCC | 5 cut(s) | 54, 861, 1348, 3106, 3611 |
| BmgBI | CACGTC | 1 cut(s) | 3444 |
| BmgT120I | GGNCC | 9 cut(s) | 4, 54, 861, 1348, 1941, 2130, 2948, 3106, 3611 |
| BmrFI | CCNGG | 1 cut(s) | 2076 |
| BmrI | ACTGGG | 1 cut(s) | 2946 |
| BmsI | GCATC | 6 cut(s) | 398, 679, 1702, 1950, 2118, 2130 |
| BmuI | ACTGGG | 1 cut(s) | 2946 |
| BpiI | GAAGAC | 4 cut(s) | 765, 1007, 1128, 2508 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3182, 3214 |
| BpmI | CTGGAG | 1 cut(s) | 3029 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3494 |
| BpuEI | CTTGAG | 8 cut(s) | 15, 68, 182, 220, 763, 1489, 2725, 3116 |
| Bsa29I | ATCGAT | 1 cut(s) | 596 |
| BsaHI | GRCGYC | 4 cut(s) | 170, 672, 1596, 2154 |
| BsaI | GGTCTC | 1 cut(s) | 456 |
| BsaJI | CCNNGG | 7 cut(s) | 728, 807, 1057, 1447, 1869, 2857, 3559 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2023, 2053, 3509, 3539 |
| Bse1I | ACTGG | 3 cut(s) | 2952, 3046, 3146 |
| Bse21I | CCTNAGG | 1 cut(s) | 2116 |
| BseBI | CCWGG | 1 cut(s) | 2076 |
| BseCI | ATCGAT | 1 cut(s) | 596 |
| BseDI | CCNNGG | 7 cut(s) | 728, 807, 1057, 1447, 1869, 2857, 3559 |
| BseMII | CTCAG | 1 cut(s) | 2886 |
| BseNI | ACTGG | 3 cut(s) | 2952, 3046, 3146 |
| BseRI | GAGGAG | 2 cut(s) | 1090, 1175 |
| BseXI | GCAGC | 6 cut(s) | 803, 1485, 1506, 1727, 2071, 2223 |
| BseYI | CCCAGC | 2 cut(s) | 3109, 3209 |
| BsgI | GTGCAG | 2 cut(s) | 1513, 2791 |
| Bsh1236I | CGCG | 1 cut(s) | 260 |
| BshFI | GGCC | 9 cut(s) | 6, 156, 379, 575, 1874, 1943, 2132, 2677, 2949 |
| BshNI | GGYRCC | 1 cut(s) | 1757 |
| BshVI | ATCGAT | 1 cut(s) | 596 |
| BsiHKAI | GWGCWC | 3 cut(s) | 740, 2104, 3485 |
| BsiWI | CGTACG | 1 cut(s) | 2302 |
| BslFI | GGGAC | 2 cut(s) | 3092, 3192 |
| BsmAI | GTCTC | 3 cut(s) | 456, 1295, 3202 |
| BsmFI | GGGAC | 2 cut(s) | 3092, 3192 |
| BsnI | GGCC | 9 cut(s) | 6, 156, 379, 575, 1874, 1943, 2132, 2677, 2949 |
| Bso31I | GGTCTC | 1 cut(s) | 456 |
| Bsp1286I | GDGCHC | 5 cut(s) | 740, 2104, 3132, 3485, 3522 |
| Bsp19I | CCATGG | 2 cut(s) | 2857, 3559 |
| BspACI | CCGC | 5 cut(s) | 52, 2026, 2214, 2357, 2919 |
| BspANI | GGCC | 9 cut(s) | 6, 156, 379, 575, 1874, 1943, 2132, 2677, 2949 |
| BspCNI | CTCAG | 1 cut(s) | 2885 |
| BspDI | ATCGAT | 1 cut(s) | 596 |
| BspFNI | CGCG | 1 cut(s) | 260 |
| BspHI | TCATGA | 1 cut(s) | 2556 |
| BspPI | GGATC | 7 cut(s) | 508, 845, 1577, 1860, 1873, 2476, 2996 |
| BspQI | GCTCTTC | 1 cut(s) | 2109 |
| BspT107I | GGYRCC | 1 cut(s) | 1757 |
| BspTNI | GGTCTC | 1 cut(s) | 456 |
| BsrBI | CCGCTC | 1 cut(s) | 52 |
| BsrI | ACTGG | 3 cut(s) | 2952, 3046, 3146 |
| BssECI | CCNNGG | 7 cut(s) | 728, 807, 1057, 1447, 1869, 2857, 3559 |
| BssNI | GRCGYC | 4 cut(s) | 170, 672, 1596, 2154 |
| BssSI | CACGAG | 3 cut(s) | 2252, 3066, 3368 |
| BssT1I | CCWWGG | 5 cut(s) | 728, 1057, 1869, 2857, 3559 |
| Bst2BI | CACGAG | 3 cut(s) | 2252, 3066, 3368 |
| Bst2UI | CCWGG | 1 cut(s) | 2076 |
| Bst4CI | ACNGT | 7 cut(s) | 988, 1013, 1322, 1762, 2010, 2197, 3059 |
| Bst6I | CTCTTC | 5 cut(s) | 137, 222, 871, 1026, 2109 |
| BstACI | GRCGYC | 4 cut(s) | 170, 672, 1596, 2154 |
| BstC8I | GCNNGC | 6 cut(s) | 438, 549, 763, 1621, 2024, 3325 |
| BstDEI | CTNAG | 7 cut(s) | 1370, 1624, 2116, 2312, 2872, 2930, 3494 |
| BstDSI | CCRYGG | 3 cut(s) | 807, 2857, 3559 |
| BstFNI | CGCG | 1 cut(s) | 260 |
| BstHHI | GCGC | 2 cut(s) | 260, 791 |
| BstMAI | GTCTC | 3 cut(s) | 456, 1295, 3202 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1088, 1629, 1683, 2550, 2967, 3068 |
| BstNI | CCWGG | 1 cut(s) | 2076 |
| BstNSI | RCATGY | 2 cut(s) | 2026, 2071 |
| BstSCI | CCNGG | 1 cut(s) | 2074 |
| BstSFI | CTRYAG | 1 cut(s) | 3072 |
| BstUI | CGCG | 1 cut(s) | 260 |
| BstV1I | GCAGC | 6 cut(s) | 803, 1485, 1506, 1727, 2071, 2223 |
| BstV2I | GAAGAC | 4 cut(s) | 765, 1007, 1128, 2508 |
| BstX2I | RGATCY | 4 cut(s) | 26, 513, 1865, 2758 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1169, 1862 |
| BstYI | RGATCY | 4 cut(s) | 26, 513, 1865, 2758 |
| Bsu15I | ATCGAT | 1 cut(s) | 596 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2116 |
| BsuRI | GGCC | 9 cut(s) | 6, 156, 379, 575, 1874, 1943, 2132, 2677, 2949 |
| BsuTUI | ATCGAT | 1 cut(s) | 596 |
| BtgI | CCRYGG | 3 cut(s) | 807, 2857, 3559 |
| BtgZI | GCGATG | 2 cut(s) | 1416, 1425 |
| BtrI | CACGTC | 1 cut(s) | 3444 |
| BtsI | GCAGTG | 1 cut(s) | 801 |
| BtsIMutI | CAGTG | 5 cut(s) | 801, 879, 894, 1009, 2959 |
| Cac8I | GCNNGC | 6 cut(s) | 438, 549, 763, 1621, 2024, 3325 |
| CciI | TCATGA | 1 cut(s) | 2556 |
| CfoI | GCGC | 2 cut(s) | 260, 791 |
| Cfr13I | GGNCC | 9 cut(s) | 4, 54, 861, 1348, 1941, 2130, 2948, 3106, 3611 |
| ClaI | ATCGAT | 1 cut(s) | 596 |
| CseI | GACGC | 5 cut(s) | 178, 429, 1585, 2162, 3266 |
| DdeI | CTNAG | 7 cut(s) | 1370, 1624, 2116, 2312, 2872, 2930, 3494 |
| DraIII | CACNNNGTG | 1 cut(s) | 375 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 236, 3194 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 236, 3194 |
| EaeI | YGGCCR | 3 cut(s) | 154, 377, 2675 |
| Eam1104I | CTCTTC | 5 cut(s) | 137, 222, 871, 1026, 2109 |
| EarI | CTCTTC | 5 cut(s) | 137, 222, 871, 1026, 2109 |
| Ecl136II | GAGCTC | 1 cut(s) | 738 |
| Eco130I | CCWWGG | 5 cut(s) | 728, 1057, 1869, 2857, 3559 |
| Eco147I | AGGCCT | 1 cut(s) | 1874 |
| Eco24I | GRGCYC | 3 cut(s) | 740, 3132, 3522 |
| Eco31I | GGTCTC | 1 cut(s) | 456 |
| Eco47I | GGWCC | 5 cut(s) | 54, 861, 1348, 3106, 3611 |
| Eco53kI | GAGCTC | 1 cut(s) | 738 |
| Eco57I | CTGAAG | 3 cut(s) | 855, 940, 2830 |
| Eco81I | CCTNAGG | 1 cut(s) | 2116 |
| EcoICRI | GAGCTC | 1 cut(s) | 738 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2130, 2948 |
| EcoRI | GAATTC | 1 cut(s) | 3089 |
| EcoRII | CCWGG | 1 cut(s) | 2074 |
| EcoT14I | CCWWGG | 5 cut(s) | 728, 1057, 1869, 2857, 3559 |
| EcoT38I | GRGCYC | 3 cut(s) | 740, 3132, 3522 |
| ErhI | CCWWGG | 5 cut(s) | 728, 1057, 1869, 2857, 3559 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 678, 710, 692, 724, 983, 1015, 1226, 1258 |
| FaqI | GGGAC | 2 cut(s) | 3092, 3192 |
| FauNDI | CATATG | 1 cut(s) | 1915 |
| FbaI | TGATCA | 1 cut(s) | 1152 |
| Fnu4HI | GCNGC | 6 cut(s) | 792, 1474, 1495, 1716, 2060, 2212 |
| FriOI | GRGCYC | 3 cut(s) | 740, 3132, 3522 |
| Fsp4HI | GCNGC | 6 cut(s) | 792, 1474, 1495, 1716, 2060, 2212 |
| GlaI | GCGC | 2 cut(s) | 259, 790 |
| GluI | GCNGC | 6 cut(s) | 792, 1474, 1495, 1716, 2060, 2212 |
| GsaI | CCCAGC | 2 cut(s) | 3113, 3213 |
| GsuI | CTGGAG | 1 cut(s) | 3029 |
| HaeIII | GGCC | 9 cut(s) | 6, 156, 379, 575, 1874, 1943, 2132, 2677, 2949 |
| HgaI | GACGC | 5 cut(s) | 178, 429, 1585, 2162, 3266 |
| HhaI | GCGC | 2 cut(s) | 260, 791 |
| Hin1I | GRCGYC | 4 cut(s) | 170, 672, 1596, 2154 |
| Hin6I | GCGC | 2 cut(s) | 258, 789 |
| HinP1I | GCGC | 2 cut(s) | 258, 789 |
| HincII | GTYRAC | 4 cut(s) | 1255, 1981, 2031, 3041 |
| HindII | GTYRAC | 4 cut(s) | 1255, 1981, 2031, 3041 |
| HindIII | AAGCTT | 5 cut(s) | 70, 1367, 1749, 1825, 2809 |
| HinfI | GANTC | 6 cut(s) | 212, 1288, 2079, 2894, 3064, 3316 |
| HpaI | GTTAAC | 1 cut(s) | 2031 |
| HphI | GGTGA | 6 cut(s) | 178, 1941, 2074, 2209, 2634, 2713 |
| Hpy188I | TCNGA | 5 cut(s) | 456, 1448, 2685, 2849, 3001 |
| Hpy99I | CGWCG | 3 cut(s) | 92, 445, 2310 |
| HpyCH4III | ACNGT | 7 cut(s) | 988, 1013, 1322, 1762, 2010, 2197, 3059 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1088, 1629, 1683, 2550, 2967, 3068 |
| HpyF3I | CTNAG | 7 cut(s) | 1370, 1624, 2116, 2312, 2872, 2930, 3494 |
| Hsp92I | GRCGYC | 4 cut(s) | 170, 672, 1596, 2154 |
| HspAI | GCGC | 2 cut(s) | 258, 789 |
| Ksp22I | TGATCA | 1 cut(s) | 1152 |
| KspAI | GTTAAC | 1 cut(s) | 2031 |
| LguI | GCTCTTC | 1 cut(s) | 2109 |
| Lsp1109I | GCAGC | 6 cut(s) | 803, 1485, 1506, 1727, 2071, 2223 |
| LweI | GCATC | 6 cut(s) | 398, 679, 1702, 1950, 2118, 2130 |
| MaeIII | GTNAC | 7 cut(s) | 166, 796, 1261, 1300, 1597, 2421, 2895 |
| MbiI | CCGCTC | 1 cut(s) | 52 |
| MfeI | CAATTG | 2 cut(s) | 926, 2487 |
| MflI | RGATCY | 4 cut(s) | 26, 513, 1865, 2758 |
| MhlI | GDGCHC | 5 cut(s) | 740, 2104, 3132, 3485, 3522 |
| MlsI | TGGCCA | 3 cut(s) | 156, 379, 2677 |
| MluNI | TGGCCA | 3 cut(s) | 156, 379, 2677 |
| MlyI | GAGTC | 5 cut(s) | 1297, 2073, 2903, 3058, 3325 |
| MmeI | TCCRAC | 4 cut(s) | 124, 1263, 1339, 3509 |
| Mox20I | TGGCCA | 3 cut(s) | 156, 379, 2677 |
| MroXI | GAANNNNTTC | 1 cut(s) | 216 |
| MscI | TGGCCA | 3 cut(s) | 156, 379, 2677 |
| MslI | CAYNNNNRTG | 7 cut(s) | 1489, 1556, 1860, 2021, 2382, 2497, 2977 |
| Msp20I | TGGCCA | 3 cut(s) | 156, 379, 2677 |
| MspA1I | CMGCKG | 3 cut(s) | 2214, 2357, 3113 |
| MspR9I | CCNGG | 1 cut(s) | 2076 |
| MunI | CAATTG | 2 cut(s) | 926, 2487 |
| MvaI | CCWGG | 1 cut(s) | 2076 |
| MvnI | CGCG | 1 cut(s) | 260 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1088, 1629, 1683, 2550, 2967, 3068 |
| NcoI | CCATGG | 2 cut(s) | 2857, 3559 |
| NdeI | CATATG | 1 cut(s) | 1915 |
| NmeAIII | GCCGAG | 1 cut(s) | 551 |
| NmuCI | GTSAC | 6 cut(s) | 166, 796, 1300, 1597, 2421, 2895 |
| NspI | RCATGY | 2 cut(s) | 2026, 2071 |
| OliI | CACNNNNGTG | 2 cut(s) | 2382, 2497 |
| PaeI | GCATGC | 1 cut(s) | 2026 |
| PagI | TCATGA | 1 cut(s) | 2556 |
| PceI | AGGCCT | 1 cut(s) | 1874 |
| PciI | ACATGT | 1 cut(s) | 2067 |
| PciSI | GCTCTTC | 1 cut(s) | 2109 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3449 |
| PdmI | GAANNNNTTC | 1 cut(s) | 216 |
| PfeI | GAWTC | 1 cut(s) | 212 |
| Pfl23II | CGTACG | 1 cut(s) | 2302 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2885, 3528 |
| PfoI | TCCNGGA | 1 cut(s) | 2074 |
| PkrI | GCNGC | 6 cut(s) | 793, 1475, 1496, 1717, 2061, 2213 |
| PleI | GAGTC | 5 cut(s) | 1296, 2073, 2902, 3058, 3324 |
| PpsI | GAGTC | 5 cut(s) | 1296, 2073, 2902, 3058, 3324 |
| PscI | ACATGT | 1 cut(s) | 2067 |
| Psp124BI | GAGCTC | 1 cut(s) | 740 |
| Psp6I | CCWGG | 1 cut(s) | 2074 |
| PspFI | CCCAGC | 2 cut(s) | 3109, 3209 |
| PspGI | CCWGG | 1 cut(s) | 2074 |
| PspLI | CGTACG | 1 cut(s) | 2302 |
| PspPI | GGNCC | 9 cut(s) | 4, 54, 861, 1348, 1941, 2130, 2948, 3106, 3611 |
| PsuI | RGATCY | 4 cut(s) | 26, 513, 1865, 2758 |
| PvuII | CAGCTG | 1 cut(s) | 3113 |
| RseI | CAYNNNNRTG | 7 cut(s) | 1489, 1556, 1860, 2021, 2382, 2497, 2977 |
| SacI | GAGCTC | 1 cut(s) | 740 |
| SapI | GCTCTTC | 1 cut(s) | 2109 |
| SatI | GCNGC | 6 cut(s) | 792, 1474, 1495, 1716, 2060, 2212 |
| Sau96I | GGNCC | 9 cut(s) | 4, 54, 861, 1348, 1941, 2130, 2948, 3106, 3611 |
| ScaI | AGTACT | 1 cut(s) | 2250 |
| SchI | GAGTC | 5 cut(s) | 1297, 2073, 2903, 3058, 3325 |
| ScrFI | CCNGG | 1 cut(s) | 2076 |
| SduI | GDGCHC | 5 cut(s) | 740, 2104, 3132, 3485, 3522 |
| SfaNI | GCATC | 6 cut(s) | 398, 679, 1702, 1950, 2118, 2130 |
| SfcI | CTRYAG | 1 cut(s) | 3072 |
| SinI | GGWCC | 5 cut(s) | 54, 861, 1348, 3106, 3611 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 1489, 1556, 1860, 2021, 2382, 2497, 2977 |
| SmlI | CTYRAG | 8 cut(s) | 30, 47, 161, 199, 742, 1468, 2704, 3131 |
| SmoI | CTYRAG | 8 cut(s) | 30, 47, 161, 199, 742, 1468, 2704, 3131 |
| SpeI | ACTAGT | 1 cut(s) | 2494 |
| SphI | GCATGC | 1 cut(s) | 2026 |
| SseBI | AGGCCT | 1 cut(s) | 1874 |
| SsiI | CCGC | 5 cut(s) | 52, 2026, 2214, 2357, 2919 |
| SspI | AATATT | 1 cut(s) | 604 |
| SstI | GAGCTC | 1 cut(s) | 740 |
| StuI | AGGCCT | 1 cut(s) | 1874 |
| StyD4I | CCNGG | 1 cut(s) | 2074 |
| StyI | CCWWGG | 5 cut(s) | 728, 1057, 1869, 2857, 3559 |
| TaaI | ACNGT | 7 cut(s) | 988, 1013, 1322, 1762, 2010, 2197, 3059 |
| TaqII | GACCGA | 2 cut(s) | 616, 1336 |
| TatI | WGTACW | 5 cut(s) | 679, 2248, 3032, 3305, 3622 |
| TfiI | GAWTC | 1 cut(s) | 212 |
| TscAI | CASTG | 5 cut(s) | 801, 879, 894, 1016, 2959 |
| TseFI | GTSAC | 6 cut(s) | 166, 796, 1300, 1597, 2421, 2895 |
| TseI | GCWGC | 6 cut(s) | 791, 1473, 1494, 1715, 2059, 2211 |
| Tsp45I | GTSAC | 6 cut(s) | 166, 796, 1300, 1597, 2421, 2895 |
| TspRI | CASTG | 5 cut(s) | 801, 879, 894, 1016, 2959 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2885, 3528 |
| VpaK11BI | GGWCC | 5 cut(s) | 54, 861, 1348, 3106, 3611 |
| XapI | RAATTY | 4 cut(s) | 485, 1165, 1920, 3089 |
| XbaI | TCTAGA | 1 cut(s) | 2636 |
| XceI | RCATGY | 2 cut(s) | 2026, 2071 |
| XmaJI | CCTAGG | 1 cut(s) | 728 |
| XmnI | GAANNNNTTC | 1 cut(s) | 216 |
| ZraI | GACGTC | 1 cut(s) | 673 |
| ZrmI | AGTACT | 1 cut(s) | 2250 |