pycom15g26760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0016957
Physical Location & Seq
Forward (+)
21920671 .. 21935865
15195 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g26760.2

Sequence Viewer

Length: 288 bp
ATGAATGATAATGCCTCATGGCCAGTGGTTGCATCCACCATGATTTCAATGATTGGCAAGGGGAAGTCGTCCTTTGGGCAAGGATCGTTGAGGTCCCGGAAGTCTACGCAAACACGTATTTGTCCTGATTTCTTAAGGACAATGACAATGTTGGAGATCCATTTGGGGTATTGCACTTCTCGAATAAAGCCTGCTTCGATTAGCTTGTCGATCTCGACCTCGATTTGTGGGATAACTCAGATCGATAGCGTCTTTGAGTTTGCTTTATCGGTCGTGTTCCAGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.34

Weight (kDa)

9.35

Isoelectric Point (pI)

29.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 104
AclWI GGATC 2 cut(s) 91, 151
AcoI YGGCCR 1 cut(s) 20
AflII CTTAAG 1 cut(s) 133
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 1 cut(s) 48
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
AlwI GGATC 2 cut(s) 91, 151
AoxI GGCC 2 cut(s) 20, 282
AspS9I GGNCC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 97
AvaII GGWCC 1 cut(s) 93
BalI TGGCCA 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 281
BcnI CCSGG 1 cut(s) 97
BfrI CTTAAG 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 97, 281
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 2 cut(s) 97, 281
BmsI GCATC 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 97
Bsa29I ATCGAT 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 281
BseCI ATCGAT 1 cut(s) 243
BseGI GGATG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 23
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 22, 284
BshVI ATCGAT 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 273
BsiSI CCGG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 2 cut(s) 22, 284
Bsp143I GATC 4 cut(s) 83, 156, 210, 240
BspANI GGCC 2 cut(s) 22, 284
BspCNI CTCAG 1 cut(s) 250
BspDI ATCGAT 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 95
BspPI GGATC 2 cut(s) 91, 151
BspTI CTTAAG 1 cut(s) 133
BsrI ACTGG 1 cut(s) 23
BssMI GATC 4 cut(s) 83, 156, 210, 240
Bst2UI CCWGG 1 cut(s) 281
BstAFI CTTAAG 1 cut(s) 133
BstBAI YACGTR 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 32
BstKTI GATC 4 cut(s) 86, 159, 213, 243
BstMBI GATC 4 cut(s) 83, 156, 210, 240
BstMCI CGRYCG 1 cut(s) 273
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 95, 279
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
Bsu15I ATCGAT 1 cut(s) 243
BsuRI GGCC 2 cut(s) 22, 284
BsuTUI ATCGAT 1 cut(s) 243
BtsCI GGATG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 93
ClaI ATCGAT 1 cut(s) 243
CseI GACGC 1 cut(s) 238
CviAII CATG 2 cut(s) 18, 40
CviJI RGCY 4 cut(s) 22, 190, 204, 284
CviKI_1 RGCY 4 cut(s) 22, 190, 204, 284
DdeI CTNAG 1 cut(s) 237
DpnI GATC 4 cut(s) 85, 158, 212, 242
DpnII GATC 4 cut(s) 83, 156, 210, 240
EaeI YGGCCR 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 21, 43
FaiI YATR 2 cut(s) 19, 41
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FaqI GGGAC 1 cut(s) 79
FatI CATG 2 cut(s) 17, 39
FblI GTMKAC 1 cut(s) 104
FokI GGATG 1 cut(s) 19
HaeIII GGCC 2 cut(s) 22, 284
HapII CCGG 1 cut(s) 97
HgaI GACGC 1 cut(s) 238
Hin1II CATG 2 cut(s) 21, 43
HpaII CCGG 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 3 cut(s) 125, 180, 214
Hpy8I GTNNAC 1 cut(s) 105
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 32, 174
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 115
Hsp92II CATG 2 cut(s) 21, 43
Kzo9I GATC 4 cut(s) 83, 156, 210, 240
LpnPI CCDG 5 cut(s) 36, 110, 138, 204, 266
LweI GCATC 1 cut(s) 41
MaeII ACGT 1 cut(s) 115
MalI GATC 4 cut(s) 85, 158, 212, 242
MboI GATC 4 cut(s) 83, 156, 210, 240
MflI RGATCY 1 cut(s) 156
MlsI TGGCCA 1 cut(s) 22
MluNI TGGCCA 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 3 cut(s) 25, 84, 229
Mox20I TGGCCA 1 cut(s) 22
MscI TGGCCA 1 cut(s) 22
MseI TTAA 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 22
MspCI CTTAAG 1 cut(s) 133
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 2 cut(s) 97, 281
MvaI CCWGG 1 cut(s) 281
NciI CCSGG 1 cut(s) 97
NdeII GATC 4 cut(s) 83, 156, 210, 240
NlaIII CATG 2 cut(s) 21, 43
NlaIV GGNNCC 1 cut(s) 95
PceI AGGCCT 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 95
Ppu21I YACGTR 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 95
PspPI GGNCC 1 cut(s) 93
PspPPI RGGWCCY 1 cut(s) 93
PsuI RGATCY 1 cut(s) 156
SaqAI TTAA 1 cut(s) 134
Sau3AI GATC 4 cut(s) 83, 156, 210, 240
Sau96I GGNCC 1 cut(s) 93
ScrFI CCNGG 2 cut(s) 97, 281
SetI ASST 4 cut(s) 95, 118, 206, 221
SfaNI GCATC 1 cut(s) 41
SinI GGWCC 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
SseBI AGGCCT 1 cut(s) 284
StuI AGGCCT 1 cut(s) 284
StyD4I CCNGG 2 cut(s) 95, 279
TaiI ACGT 1 cut(s) 118
TaqI TCGA 6 cut(s) 181, 197, 209, 215, 221, 243
TaqII GACCGA 1 cut(s) 259
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 30
Vha464I CTTAAG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.