Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009791

Physical Location & Seq

Genomic Coordinates Forward (+)

4787130 .. 4789149

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04850.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGCCAGGGTCAAAGTCGTTAAATAATCCCCACAGCTCGCATTGCATGCTCTTGTTCCCAAACATAGTAAAACTCACCTCCACTTGTGTCATTCACTTAGACGCTTCTCACACAACGCAAACTCTCTCTCCTCCCTCTCCTCTCTCTTTCTCTCTCTATAGGCGGCACCATTTCTGTCCACTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTAAACTCCCAACTCGCCCACTTTTCCCACATCTGCCTCCACATTCCACAAAAACCAAACACAACCACCGCATTCATGGCAGAGGTCACAAAGCAGCAGCACCTCCCCATCAACGGCGGAACTCTGATCTCTGACCTCAAGAGCCTCTTCTCTCTCTTCAAAACCAGAAGAACTGCGGCTTTTGCATATGGCTTCATGTTTGCTTTCGTCGCCTTTACTGTTTTCTTGGCCTTCAGTCCGTCACCCAACTACACTTATCCATGGTTCACTAACATTTTCAGTACTTCCACTTCTACTACCTCCACTACTGGTTCCAGTTCTTCGTTTTCCTCCGTCTTCTTCCCCAATGGTACTTCTTCATCTCCGCCGCAGCAAAATCAATCCTTTTTTTCTCCTCCGTCGCAAACAGAGCCGTCTAGATCTGCTAACACCACCGCCGCCGCCGCTCCCGCTGCGGCACAATCTGCCTCTGTGAATAAACAACCGCCTGTTTTGACAAACCAAACGCAACCCACAATTTTGAACCCAAATCAGACCTCAATCGTCGAGCCAAAATCTCTAGTCACACCCAAGAATAGTACTACTTCACCCGCACCGACAACCCTTTCGAAAAACCAGACTGGCAGCACCCACAATTCTGATAAGGCCACGGTTTTTACGGCCAATCAAACGGGAATCACCGCCCCCAAAACCCCGGTGGCTGGGAACGGAAGCTCCGATTTGGTACCGAAATCGGGTTTGGAGGACAAGAGCGTTGCAGAGAAGGGTGTGGAGAAGAATATAACTGCTTCCCTGTTGAATAAACAGAGCAATGAAACGAAGTCCGGCGTGTCGGTGGAGCAGAGGAAGCCGGGGAGTGATGATTTGGTGAAGTCTTTGATGAATTGTGAGATGTTACATGGAGAGTGGGTGAGGGACGATTCATACCCGCTGTACAAACCGGGTTCTTGTCCTCTGATAGATGAACAATTCAACTGTATTCTCAATGGTAGGCCTGATAAGGATTATCAGAAATACAAATGGAAGCCTAAGGATTGCACCTTACCAAGGTTGGACGGAAGTCATATGTTGGAGTTGTTGAGAGGAAAGCGCCTGGTATTTGTTGGTGATTCTCTGAACAGAAATATGTGGGAATCTCTGGTTTGCATCCTCAGAAACTCAGCGAAAGATAAGAGCAAGGATTATAACTGCACAGTGGAGTTTTTTGTGTCTCCCTTCTTAGTTCGAGAATGGGAAATGCCGGAAAAAGATGGATCAATAGAAATAAACACTTCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

497

Amino Acids

54.32

Weight (kDa)

8.95

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12060 AT5G06700
fragaria_vesca	FvH4_6g22040
malus_domestica	MD12G1055700.v1.1 MD14G1054900.v1.1
prunus_persica	Prupe.7G079400_v2.0.a1
pyrus_communis	pycom12g04850 pycom14g04530
rosa_chinensis	RchiOBHm_Chr3g0479331
rosa_laevigata	RLG00000023584
rosa_multiflora	Rmu_co8488735.1_g000001 Rmu_sc0006763.1_g000008 Rmu_sc0006763.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402410
rosa_rugosa	Rorug03G0174400 Rorug03G0174500
rosa_samantha	Rh3AG225400 Rh3BG258200 Rh3CG254000 Rh3DG249800
rosa_wichuraiana	Rw3G020160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1395
Acc65I	GGTACC	1 cut(s)	934
AccB1I	GGYRCC	2 cut(s)	165, 934
AccBSI	CCGCTC	1 cut(s)	656
AclWI	GGATC	1 cut(s)	1471
AcoI	YGGCCR	1 cut(s)	870
AcuI	CTGAAG	1 cut(s)	427
AfaI	GTAC	5 cut(s)	493, 562, 790, 936, 1145
AfiI	CCNNNNNNNGG	4 cut(s)	323, 911, 944, 1257
AgsI	TTSAA	4 cut(s)	370, 733, 1009, 1183
AjnI	CCWGG	2 cut(s)	4, 1302
AjuI	GAANNNNNNNTTGG	2 cut(s)	932, 964
AloI	GAACNNNNNNTCC	2 cut(s)	908, 940
AluBI	AGCT	2 cut(s)	36, 924
AluI	AGCT	2 cut(s)	36, 924
Alw26I	GTCTC	1 cut(s)	1425
AlwI	GGATC	1 cut(s)	1471
AoxI	GGCC	4 cut(s)	438, 855, 870, 1202
ApeKI	GCWGC	5 cut(s)	304, 307, 580, 662, 834
ArsI	GACNNNNNNTTYG	2 cut(s)	799, 831
Asp718I	GGTACC	1 cut(s)	934
AspLEI	GCGC	1 cut(s)	1302
AsuC2I	CCSGG	3 cut(s)	905, 1062, 1152
AsuHPI	GGTGA	7 cut(s)	67, 444, 789, 880, 1090, 1132, 1328
AsuII	TTCGAA	1 cut(s)	818
AxyI	CCTNAGG	1 cut(s)	1239
BanI	GGYRCC	2 cut(s)	165, 934
BarI	GAAGNNNNNNTAC	2 cut(s)	484, 516
BbsI	GAAGAC	1 cut(s)	538
BbvI	GCAGC	5 cut(s)	316, 319, 592, 649, 846
BccI	CCATC	2 cut(s)	326, 1454
BceAI	ACGGC	3 cut(s)	340, 607, 885
BciT130I	CCWGG	2 cut(s)	6, 1304
BcnI	CCSGG	3 cut(s)	905, 1062, 1152
BcoDI	GTCTC	1 cut(s)	1425
BfaI	CTAG	2 cut(s)	627, 770
BfmI	CTRYAG	1 cut(s)	157
BfoI	RGCGCY	1 cut(s)	1303
BglII	AGATCT	1 cut(s)	629
BmcAI	AGTACT	2 cut(s)	493, 790
Bme1390I	CCNGG	5 cut(s)	6, 905, 1062, 1152, 1304
BmiI	GGNNCC	3 cut(s)	167, 523, 936
BmrFI	CCNGG	5 cut(s)	6, 905, 1062, 1152, 1304
BmsI	GCATC	1 cut(s)	1365
BoxI	GACNNNNGTC	1 cut(s)	1269
BpiI	GAAGAC	1 cut(s)	538
Bpu14I	TTCGAA	1 cut(s)	818
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	3 cut(s)	905, 1062, 1152
BsaJI	CCNNGG	6 cut(s)	5, 470, 858, 903, 1061, 1256
BsaXI	ACNNNNNCTCC	6 cut(s)	112, 142, 908, 938, 1104, 1134
Bsc4I	CCNNNNNNNGG	4 cut(s)	323, 911, 944, 1257
Bse1I	ACTGG	3 cut(s)	523, 525, 835
Bse21I	CCTNAGG	1 cut(s)	1239
Bse3DI	GCAATG	2 cut(s)	40, 1027
BseBI	CCWGG	2 cut(s)	6, 1304
BseDI	CCNNGG	6 cut(s)	5, 470, 858, 903, 1061, 1256
BseGI	GGATG	1 cut(s)	1356
BseLI	CCNNNNNNNGG	4 cut(s)	323, 911, 944, 1257
BseMI	GCAATG	2 cut(s)	40, 1027
BseMII	CTCAG	2 cut(s)	1375, 1383
BseNI	ACTGG	3 cut(s)	523, 525, 835
BseRI	GAGGAG	3 cut(s)	120, 129, 594
BseXI	GCAGC	5 cut(s)	316, 319, 592, 649, 846
BseYI	CCCAGC	1 cut(s)	911
BsgI	GTGCAG	1 cut(s)	1384
BshFI	GGCC	4 cut(s)	440, 857, 872, 1204
BshNI	GGYRCC	2 cut(s)	165, 934
BsiSI	CCGG	5 cut(s)	905, 1035, 1061, 1151, 1451
BslFI	GGGAC	1 cut(s)	1139
BslI	CCNNNNNNNGG	4 cut(s)	323, 911, 944, 1257
BsmAI	GTCTC	1 cut(s)	1425
BsmFI	GGGAC	1 cut(s)	1139
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	4 cut(s)	440, 857, 872, 1204
Bsp119I	TTCGAA	1 cut(s)	818
Bsp1407I	TGTACA	1 cut(s)	1143
Bsp143I	GATC	3 cut(s)	336, 629, 1463
Bsp19I	CCATGG	1 cut(s)	470
BspANI	GGCC	4 cut(s)	440, 857, 872, 1204
BspCNI	CTCAG	2 cut(s)	1374, 1382
BspLI	GGNNCC	3 cut(s)	167, 523, 936
BspPI	GGATC	1 cut(s)	1471
BspT104I	TTCGAA	1 cut(s)	818
BspT107I	GGYRCC	2 cut(s)	165, 934
BsrBI	CCGCTC	1 cut(s)	656
BsrDI	GCAATG	2 cut(s)	40, 1027
BsrGI	TGTACA	1 cut(s)	1143
BsrI	ACTGG	3 cut(s)	523, 525, 835
BssECI	CCNNGG	6 cut(s)	5, 470, 858, 903, 1061, 1256
BssMI	GATC	3 cut(s)	336, 629, 1463
BssT1I	CCWWGG	2 cut(s)	470, 1256
Bst2UI	CCWGG	2 cut(s)	6, 1304
Bst4CI	ACNGT	4 cut(s)	430, 862, 1187, 1405
Bst6I	CTCTTC	2 cut(s)	362, 371
BstAPI	GCANNNNNTGC	2 cut(s)	46, 674
BstAUI	TGTACA	1 cut(s)	1143
BstBI	TTCGAA	1 cut(s)	818
BstC8I	GCNNGC	2 cut(s)	38, 47
BstDEI	CTNAG	5 cut(s)	97, 1239, 1361, 1369, 1429
BstDSI	CCRYGG	2 cut(s)	470, 858
BstENI	CCTNNNNNAGG	1 cut(s)	1255
BstF5I	GGATG	1 cut(s)	1356
BstH2I	RGCGCY	1 cut(s)	1303
BstHHI	GCGC	1 cut(s)	1302
BstKTI	GATC	3 cut(s)	339, 632, 1466
BstMAI	GTCTC	1 cut(s)	1425
BstMBI	GATC	3 cut(s)	336, 629, 1463
BstNI	CCWGG	2 cut(s)	6, 1304
BstNSI	RCATGY	1 cut(s)	49
BstPAI	GACNNNNGTC	1 cut(s)	1269
BstSCI	CCNGG	5 cut(s)	4, 903, 1060, 1150, 1302
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	5 cut(s)	316, 319, 592, 649, 846
BstV2I	GAAGAC	1 cut(s)	538
BstX2I	RGATCY	1 cut(s)	629
BstYI	RGATCY	1 cut(s)	629
Bsu36I	CCTNAGG	1 cut(s)	1239
BsuRI	GGCC	4 cut(s)	440, 857, 872, 1204
BtgI	CCRYGG	2 cut(s)	470, 858
BtsCI	GGATG	1 cut(s)	1356
BtsIMutI	CAGTG	1 cut(s)	1410
Cac8I	GCNNGC	2 cut(s)	38, 47
CfoI	GCGC	1 cut(s)	1302
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	5 cut(s)	492, 561, 789, 935, 1144
CviAII	CATG	5 cut(s)	46, 286, 406, 471, 1109
CviQI	GTAC	5 cut(s)	492, 561, 789, 935, 1144
DdeI	CTNAG	5 cut(s)	97, 1239, 1361, 1369, 1429
DpnI	GATC	3 cut(s)	338, 631, 1465
DpnII	GATC	3 cut(s)	336, 629, 1463
EaeI	YGGCCR	1 cut(s)	870
Eam1104I	CTCTTC	2 cut(s)	362, 371
EarI	CTCTTC	2 cut(s)	362, 371
EciI	GGCGGA	2 cut(s)	342, 564
Eco130I	CCWWGG	2 cut(s)	470, 1256
Eco147I	AGGCCT	1 cut(s)	1204
Eco57I	CTGAAG	1 cut(s)	427
Eco81I	CCTNAGG	1 cut(s)	1239
EcoNI	CCTNNNNNAGG	1 cut(s)	1255
EcoRII	CCWGG	2 cut(s)	4, 1302
EcoT14I	CCWWGG	2 cut(s)	470, 1256
ErhI	CCWWGG	2 cut(s)	470, 1256
FaeI	CATG	5 cut(s)	49, 289, 409, 474, 1112
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	1139
FatI	CATG	5 cut(s)	45, 285, 405, 470, 1108
FauI	CCCGC	3 cut(s)	667, 808, 1146
FauNDI	CATATG	2 cut(s)	397, 1275
FokI	GGATG	1 cut(s)	1343
FspBI	CTAG	2 cut(s)	627, 770
GlaI	GCGC	1 cut(s)	1301
GsaI	CCCAGC	1 cut(s)	915
HaeII	RGCGCY	1 cut(s)	1303
HaeIII	GGCC	4 cut(s)	440, 857, 872, 1204
HapII	CCGG	5 cut(s)	905, 1035, 1061, 1151, 1451
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	1302
Hin1II	CATG	5 cut(s)	49, 289, 409, 474, 1112
Hin6I	GCGC	1 cut(s)	1300
HinP1I	GCGC	1 cut(s)	1300
HinfI	GANTC	4 cut(s)	885, 1130, 1319, 1343
HpaII	CCGG	5 cut(s)	905, 1035, 1061, 1151, 1451
HphI	GGTGA	7 cut(s)	67, 444, 789, 880, 1090, 1132, 1328
Hpy166II	GTNNAC	2 cut(s)	179, 477
Hpy188I	TCNGA	9 cut(s)	336, 343, 744, 850, 928, 1167, 1221, 1326, 1364
Hpy188III	TCNNGA	4 cut(s)	349, 627, 1436, 1488
Hpy8I	GTNNAC	2 cut(s)	179, 477
Hpy99I	CGWCG	3 cut(s)	422, 613, 758
HpyAV	CCTTC	3 cut(s)	451, 967, 1435
HpyCH4III	ACNGT	4 cut(s)	430, 862, 1187, 1405
HpyCH4V	TGCA	6 cut(s)	45, 395, 968, 1248, 1356, 1401
HpyF3I	CTNAG	5 cut(s)	97, 1239, 1361, 1369, 1429
Hsp92II	CATG	5 cut(s)	49, 289, 409, 474, 1112
HspAI	GCGC	1 cut(s)	1300
KpnI	GGTACC	1 cut(s)	938
Kzo9I	GATC	3 cut(s)	336, 629, 1463
LmnI	GCTCC	3 cut(s)	661, 929, 1048
Lsp1109I	GCAGC	5 cut(s)	316, 319, 592, 649, 846
LweI	GCATC	1 cut(s)	1365
MaeI	CTAG	2 cut(s)	627, 770
MaeIII	GTNAC	4 cut(s)	295, 450, 772, 1104
MalI	GATC	3 cut(s)	338, 631, 1465
MbiI	CCGCTC	1 cut(s)	656
MboI	GATC	3 cut(s)	336, 629, 1463
MboII	GAAGA	8 cut(s)	349, 358, 390, 522, 538, 541, 558, 997
MflI	RGATCY	1 cut(s)	629
MluCI	AATT	4 cut(s)	726, 844, 1093, 1178
MmeI	TCCRAC	2 cut(s)	1242, 1260
MseI	TTAA	1 cut(s)	20
MspA1I	CMGCKG	2 cut(s)	662, 1141
MspI	CCGG	5 cut(s)	905, 1035, 1061, 1151, 1451
MspR9I	CCNGG	5 cut(s)	6, 905, 1062, 1152, 1304
Mva1269I	GAATGC	1 cut(s)	281
MvaI	CCWGG	2 cut(s)	6, 1304
NciI	CCSGG	3 cut(s)	905, 1062, 1152
NcoI	CCATGG	1 cut(s)	470
NdeI	CATATG	2 cut(s)	397, 1275
NdeII	GATC	3 cut(s)	336, 629, 1463
NlaIII	CATG	5 cut(s)	49, 289, 409, 474, 1112
NlaIV	GGNNCC	3 cut(s)	167, 523, 936
NmuCI	GTSAC	3 cut(s)	295, 450, 772
NspI	RCATGY	1 cut(s)	49
NspV	TTCGAA	1 cut(s)	818
PaeI	GCATGC	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	1204
PcsI	WCGNNNNNNNCGW	1 cut(s)	924
PctI	GAATGC	1 cut(s)	281
PfeI	GAWTC	4 cut(s)	885, 1130, 1319, 1343
PshAI	GACNNNNGTC	1 cut(s)	1269
PsiI	TTATAA	1 cut(s)	1395
Psp6I	CCWGG	2 cut(s)	4, 1302
PspFI	CCCAGC	1 cut(s)	911
PspGI	CCWGG	2 cut(s)	4, 1302
PspN4I	GGNNCC	3 cut(s)	167, 523, 936
PsuI	RGATCY	1 cut(s)	629
RsaI	GTAC	5 cut(s)	493, 562, 790, 936, 1145
RsaNI	GTAC	5 cut(s)	492, 561, 789, 935, 1144
SaqAI	TTAA	1 cut(s)	20
Sau3AI	GATC	3 cut(s)	336, 629, 1463
ScaI	AGTACT	2 cut(s)	493, 790
ScrFI	CCNGG	5 cut(s)	6, 905, 1062, 1152, 1304
SfaNI	GCATC	1 cut(s)	1365
SfcI	CTRYAG	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	818
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SphI	GCATGC	1 cut(s)	49
Sse9I	AATT	4 cut(s)	726, 844, 1093, 1178
SseBI	AGGCCT	1 cut(s)	1204
SspMI	CTAG	2 cut(s)	627, 770
StuI	AGGCCT	1 cut(s)	1204
StyD4I	CCNGG	5 cut(s)	4, 903, 1060, 1150, 1302
StyI	CCWWGG	2 cut(s)	470, 1256
TaaI	ACNGT	4 cut(s)	430, 862, 1187, 1405
TaqI	TCGA	3 cut(s)	756, 818, 1435
TasI	AATT	4 cut(s)	726, 844, 1093, 1178
TatI	WGTACW	3 cut(s)	491, 788, 1143
TauI	GCSGC	7 cut(s)	166, 389, 580, 650, 653, 656, 668
TfiI	GAWTC	4 cut(s)	885, 1130, 1319, 1343
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	1 cut(s)	1410
TseFI	GTSAC	3 cut(s)	295, 450, 772
TseI	GCWGC	5 cut(s)	304, 307, 580, 662, 834
Tsp45I	GTSAC	3 cut(s)	295, 450, 772
TspDTI	ATGAA	7 cut(s)	274, 394, 558, 1038, 1106, 1122, 1188
TspGWI	ACGGA	5 cut(s)	438, 532, 597, 933, 1281
TspRI	CASTG	1 cut(s)	1410
XagI	CCTNNNNNAGG	1 cut(s)	1255
XbaI	TCTAGA	1 cut(s)	626
XceI	RCATGY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	2 cut(s)	283, 904
XspI	CTAG	2 cut(s)	627, 770
ZrmI	AGTACT	2 cut(s)	493, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.