Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009791

Physical Location & Seq

Genomic Coordinates Reverse (-)

14749733 .. 14753859

Gene Structure 4127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0174500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTGAAAATTACTACAGCTCCTGTTCCTGAAGAAGCTATTCAACTTTACATTGAGGCGTGCACTATTCTTGAAGACGATGGCAAAGAGCAAATGGCCTTTGATCTATATCGAGATGTTACTAGTGCTTATATAAAACTTCAAAAGTATACAGATGCTGCGGCTTTCCTGTTAAGATGGGGCTTAGCAGCTGATAAGTGTAATGCTACCCATAGCCAGTGCAAGGCATATCTTAGTGCAATTCTCATATACCTGTATATTCGTGATGTCAAGCAAGCAGAAAAATGCTACAACGATTGCTCCCAGGTCGATGCTTTTTTGGGCAATGATCATGGCCGATGTGCTAGTAAACTTCTTTTCGCATACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

123

Amino Acids

13.89

Weight (kDa)

5.28

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12060 AT5G06700
fragaria_vesca	FvH4_6g22040
malus_domestica	MD12G1055700.v1.1 MD14G1054900.v1.1
prunus_persica	Prupe.7G079400_v2.0.a1
pyrus_communis	pycom12g04850 pycom14g04530
rosa_chinensis	RchiOBHm_Chr3g0479331
rosa_laevigata	RLG00000023584
rosa_multiflora	Rmu_co8488735.1_g000001 Rmu_sc0006763.1_g000008 Rmu_sc0006763.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402410
rosa_rugosa	Rorug03G0174400 Rorug03G0174500
rosa_samantha	Rh3AG225400 Rh3BG258200 Rh3CG254000 Rh3DG249800
rosa_wichuraiana	Rw3G020160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	149
AciI	CCGC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	7, 44, 74, 143
AhlI	ACTAGT	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	3 cut(s)	20, 38, 191
AluI	AGCT	3 cut(s)	20, 38, 191
Alw21I	GWGCWC	1 cut(s)	65
Alw44I	GTGCAC	1 cut(s)	61
AlwNI	CAGNNNCTG	2 cut(s)	23, 158
AoxI	GGCC	2 cut(s)	96, 334
ApaLI	GTGCAC	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	158, 188
Asp700I	GAANNNNTTC	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	145, 200
BccI	CCATC	2 cut(s)	74, 171
BciT130I	CCWGG	1 cut(s)	305
BclI	TGATCA	1 cut(s)	328
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	2 cut(s)	123, 345
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	3 cut(s)	159, 162, 189
BlpI	GCTNAGC	1 cut(s)	184
BlsI	GCNGC	3 cut(s)	160, 163, 190
Bme1390I	CCNGG	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	2 cut(s)	145, 301
BpiI	GAAGAC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	303
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 284, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	331
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	303
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	331
BseNI	ACTGG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	145, 200
BshFI	GGCC	2 cut(s)	98, 336
BsiHKAI	GWGCWC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	223
BsnI	GGCC	2 cut(s)	98, 336
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	103, 328
Bsp1720I	GCTNAGC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	2 cut(s)	98, 336
BsrDI	GCAATG	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	2 cut(s)	103, 328
BssNAI	GTATAC	1 cut(s)	150
Bst1107I	GTATAC	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	61, 276
BstDEI	CTNAG	2 cut(s)	184, 233
BstKTI	GATC	2 cut(s)	106, 331
BstMBI	GATC	2 cut(s)	103, 328
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	145, 200
BstV2I	GAAGAC	1 cut(s)	81
BstZ17I	GTATAC	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	98, 336
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	61, 276
CaiI	CAGNNNCTG	2 cut(s)	23, 158
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	8 cut(s)	20, 38, 98, 164, 183, 191, 216, 336
CviKI_1	RGCY	8 cut(s)	20, 38, 98, 164, 183, 191, 216, 336
DdeI	CTNAG	2 cut(s)	184, 233
DpnI	GATC	2 cut(s)	105, 330
DpnII	GATC	2 cut(s)	103, 328
EaeI	YGGCCR	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	303
FaeI	CATG	1 cut(s)	335
FatI	CATG	1 cut(s)	331
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	3 cut(s)	159, 162, 189
Fsp4HI	GCNGC	3 cut(s)	159, 162, 189
FspBI	CTAG	2 cut(s)	123, 345
GluI	GCNGC	3 cut(s)	159, 162, 189
HaeIII	GGCC	2 cut(s)	98, 336
Hin1II	CATG	1 cut(s)	335
Hpy166II	GTNNAC	3 cut(s)	63, 150, 350
Hpy188III	TCNNGA	4 cut(s)	29, 71, 113, 263
Hpy8I	GTNNAC	3 cut(s)	63, 150, 350
HpyCH4V	TGCA	3 cut(s)	63, 222, 239
HpyF3I	CTNAG	2 cut(s)	184, 233
Hsp92II	CATG	1 cut(s)	335
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	103, 328
LmnI	GCTCC	2 cut(s)	25, 305
LpnPI	CCDG	7 cut(s)	36, 42, 182, 230, 266, 290, 317
Lsp1109I	GCAGC	2 cut(s)	145, 200
LweI	GCATC	2 cut(s)	145, 301
MaeI	CTAG	2 cut(s)	123, 345
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	105, 330
MboI	GATC	2 cut(s)	103, 328
MboII	GAAGA	2 cut(s)	44, 86
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	2 cut(s)	9, 240
MnlI	CCTC	1 cut(s)	49
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
NdeII	GATC	2 cut(s)	103, 328
NlaIII	CATG	1 cut(s)	335
PdmI	GAANNNNTTC	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	160, 163, 190
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PstNI	CAGNNNCTG	2 cut(s)	23, 158
PvuII	CAGCTG	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	3 cut(s)	159, 162, 189
Sau3AI	GATC	2 cut(s)	103, 328
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	5 cut(s)	22, 40, 193, 255, 309
SfaNI	GCATC	2 cut(s)	145, 301
SfcI	CTRYAG	1 cut(s)	15
SpeI	ACTAGT	1 cut(s)	122
Sse9I	AATT	2 cut(s)	9, 240
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	2 cut(s)	123, 345
StyD4I	CCNGG	1 cut(s)	303
TaqI	TCGA	2 cut(s)	112, 309
TasI	AATT	2 cut(s)	9, 240
TauI	GCSGC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	224
TseI	GCWGC	2 cut(s)	158, 188
TspRI	CASTG	1 cut(s)	224
VneI	GTGCAC	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	2 cut(s)	123, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.