Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009791

Physical Location & Seq

Genomic Coordinates Forward (+)

24751183 .. 24754898

Gene Structure 3716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG254000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGGCTGAGGCAACAAAGCACAACAACCTACCCATCAATGGTGGAACATTGATCTCAGACATGAAGAGCCTCTTCTCCATCATCAAAACCAGAAGAACTGTTGCCTTTGCCTATGGCTTCATGTTTGCCTTTGTTGCCTTCACTGTTTTCTTGGCCTTCAATCCAAACCCGAACTCTGGTGCTCCTTGGTTCACTAACATATTCAGCACCAGCAGCACTGCTACTACTTCTGGTAGTGGATCTCAGTTCTCTTCCTTTTTCTCTTCTTTCTTCTACCCCAATGCTTCTTCTTCTTCCCCCTCCTCCTCCTCCCAACAGTTCCAAAGTTTTGTTCCTTCTCCACAAACACAGCCATCTAGATCTAGTAACACCACTGTGAATAAACAACCGCCGAGCCAAACTCAGCCCATTGTGAATTCTGATAAACCACAAGTTTTGAGCCCAAATCAGACATCAGATTCCCCATCTAACGCTTCCTTAGCGACCCAGGACAGTTCAAGCTTGCCTAAACAAACCCTTGTGAAAAACCAAACTCAGACCGCCCCAAATTCTGATAAGGCCACAGTTTTAGAGGCAAATCAGACCACAATTGCCGCCCCAATAACTCCGGTGCCGGTGCCGGCCAATAAGACCGCGAGCTCACCTCCGAAATCGGGTTCCAGTGGGAAGAACGACCCTAAGAGTGTTGCTGAGAAGGGTGTGACATCGAATTATACGGATGTGTTGAAGAAACAGAGCAATGAAACAAAATCCAGTGTGTCGGTGAAGGAGGGGAAGGATGATTTGATCAAGTCTTTGTTGAGTTGTGATTTGTTTCACGGGGAATGGGTCGAGGATGATTCATACCCTCTTTACGAACCTGGGTCTTGTCCTTTGATTGATGAGCAGTTCAATTGTATTCGTAATGGTAGGCCTGATAAGGATTATCAGAAATTCAAATGGCAGCCTAAGGATTGCAATCTCCCAAGGTTGGATGGAAGTCATATGTTAGAGTTATTGAGAGGAAAGCGCTTGGTTTTTGTTGGTGATTCTCTGAACAGGAATATGTGGGAATCTCTGGTTTGCATTTTAAGAAACTCAGCAAAAGATAAAAGCAAGGTTTATGAAGCCCATGGAAGAACCCATTTTCGTGGGGAAGCTTCATACTCCTTCATATTCAAAGACTATAATTGCACAGTGGAGTTCTTTGTTTCTCCCTTCTTAGTTCGAGAATGGGAAATGCCGGATAAAGATGGATCGAAGAAAGAAACACTTCGTCTTGATCTAGTCGGGCGATCATCCAATCTATACAAAGATGCAGATATTCTCATCTTCAACACTGGACACTGGTGGACACATGACAAAACCGCGAAAGGGAAAGACTATTACCAAGAAGGTAGCCATGTCTATGGTGAATTGAATGTTCTGGAGGCATTTCGGAAAGCTTTGACTACTTGGTCCAGATGGGTTGATGCTAGTGTTGACACGGGGAAAAGTATGGTATTCTTTCGGGGTTATTCTGCCTCCCATTTCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

505

Amino Acids

56.11

Weight (kDa)

8.86

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	268 - 320	4.2e-24	PMR5 N terminal Domain
PC-Esterase	PF13839	321 - 505	6.6e-59	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12060 AT5G06700
fragaria_vesca	FvH4_6g22040
malus_domestica	MD12G1055700.v1.1 MD14G1054900.v1.1
prunus_persica	Prupe.7G079400_v2.0.a1
pyrus_communis	pycom12g04850 pycom14g04530
rosa_chinensis	RchiOBHm_Chr3g0479331
rosa_laevigata	RLG00000023584
rosa_multiflora	Rmu_co8488735.1_g000001 Rmu_sc0006763.1_g000008 Rmu_sc0006763.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402410
rosa_rugosa	Rorug03G0174400 Rorug03G0174500
rosa_samantha	Rh3AG225400 Rh3BG258200 Rh3CG254000 Rh3DG249800
rosa_wichuraiana	Rw3G020160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1435
AccB1I	GGYRCC	2 cut(s)	610, 616
AccII	CGCG	2 cut(s)	635, 1349
AciI	CCGC	5 cut(s)	389, 540, 594, 633, 1347
AclWI	GGATC	2 cut(s)	247, 1243
AcoI	YGGCCR	1 cut(s)	621
AcsI	RAATTY	3 cut(s)	415, 547, 932
AfeI	AGCGCT	1 cut(s)	1010
AfiI	CCNNNNNNNGG	6 cut(s)	38, 176, 653, 970, 1353, 1512
AgsI	TTSAA	8 cut(s)	160, 498, 727, 892, 937, 1159, 1315, 1399
AjnI	CCWGG	2 cut(s)	486, 859
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AleI	CACNNNNGTG	1 cut(s)	374
AluBI	AGCT	4 cut(s)	501, 639, 1139, 1424
AluI	AGCT	4 cut(s)	501, 639, 1139, 1424
Alw21I	GWGCWC	2 cut(s)	184, 641
AlwI	GGATC	2 cut(s)	247, 1243
Aor51HI	AGCGCT	1 cut(s)	1010
AoxI	GGCC	4 cut(s)	153, 558, 621, 911
ApeKI	GCWGC	2 cut(s)	213, 943
ApoI	RAATTY	3 cut(s)	415, 547, 932
Asp700I	GAANNNNTTC	1 cut(s)	1251
AspLEI	GCGC	1 cut(s)	1011
AspS9I	GGNCC	1 cut(s)	1437
AsuHPI	GGTGA	4 cut(s)	633, 775, 1037, 1403
AvaII	GGWCC	1 cut(s)	1437
AxyI	CCTNAGG	1 cut(s)	948
BanI	GGYRCC	2 cut(s)	610, 616
BanII	GRGCYC	2 cut(s)	443, 641
Bbv12I	GWGCWC	2 cut(s)	184, 641
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	225, 955
BccI	CCATC	7 cut(s)	41, 86, 361, 472, 968, 1226, 1437
BciT130I	CCWGG	2 cut(s)	488, 861
BclI	TGATCA	1 cut(s)	786
BfaI	CTAG	4 cut(s)	357, 363, 1265, 1455
BfoI	RGCGCY	1 cut(s)	1012
BglII	AGATCT	1 cut(s)	359
BisI	GCNGC	3 cut(s)	214, 594, 944
BlsI	GCNGC	3 cut(s)	215, 595, 945
Bme1390I	CCNGG	2 cut(s)	488, 861
Bme18I	GGWCC	1 cut(s)	1437
BmgT120I	GGNCC	1 cut(s)	1437
BmiI	GGNNCC	3 cut(s)	612, 618, 658
BmrFI	CCNGG	2 cut(s)	488, 861
BmsI	GCATC	2 cut(s)	1285, 1441
BplI	GAGNNNNNCTC	4 cut(s)	385, 417, 628, 660
BpmI	CTGGAG	1 cut(s)	1427
Bpu10I	CCTNAGC	2 cut(s)	6, 478
BsaBI	GATNNNNATC	1 cut(s)	957
BsaJI	CCNNGG	5 cut(s)	185, 486, 860, 965, 1111
BsaWI	WCCGGW	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	6 cut(s)	38, 176, 653, 970, 1353, 1512
Bse118I	RCCGGY	2 cut(s)	613, 619
Bse1I	ACTGG	4 cut(s)	660, 753, 1324, 1331
Bse21I	CCTNAGG	1 cut(s)	948
Bse3DI	GCAATG	1 cut(s)	745
Bse8I	GATNNNNATC	1 cut(s)	957
BseBI	CCWGG	2 cut(s)	488, 861
BseDI	CCNNGG	5 cut(s)	185, 486, 860, 965, 1111
BseGI	GGATG	5 cut(s)	724, 784, 841, 979, 1277
BseJI	GATNNNNATC	1 cut(s)	957
BseLI	CCNNNNNNNGG	6 cut(s)	38, 176, 653, 970, 1353, 1512
BseMI	GCAATG	1 cut(s)	745
BseMII	CTCAG	6 cut(s)	69, 257, 416, 548, 681, 1092
BseNI	ACTGG	4 cut(s)	660, 753, 1324, 1331
BseRI	GAGGAG	3 cut(s)	292, 295, 298
BseXI	GCAGC	2 cut(s)	225, 955
Bsh1236I	CGCG	2 cut(s)	635, 1349
BshFI	GGCC	4 cut(s)	155, 560, 623, 913
BshNI	GGYRCC	2 cut(s)	610, 616
BsiHKAI	GWGCWC	2 cut(s)	184, 641
BsiSI	CCGG	4 cut(s)	608, 614, 620, 1223
BslI	CCNNNNNNNGG	6 cut(s)	38, 176, 653, 970, 1353, 1512
BsnI	GGCC	4 cut(s)	155, 560, 623, 913
Bsp1286I	GDGCHC	3 cut(s)	184, 443, 641
Bsp143I	GATC	7 cut(s)	51, 239, 359, 786, 1235, 1261, 1274
Bsp19I	CCATGG	1 cut(s)	1111
BspACI	CCGC	5 cut(s)	389, 540, 594, 633, 1347
BspANI	GGCC	4 cut(s)	155, 560, 623, 913
BspCNI	CTCAG	6 cut(s)	68, 256, 415, 547, 682, 1091
BspFNI	CGCG	2 cut(s)	635, 1349
BspLI	GGNNCC	3 cut(s)	612, 618, 658
BspPI	GGATC	2 cut(s)	247, 1243
BspQI	GCTCTTC	1 cut(s)	59
BspT107I	GGYRCC	2 cut(s)	610, 616
BsrDI	GCAATG	1 cut(s)	745
BsrFI	RCCGGY	2 cut(s)	613, 619
BsrI	ACTGG	4 cut(s)	660, 753, 1324, 1331
BssAI	RCCGGY	2 cut(s)	613, 619
BssECI	CCNNGG	5 cut(s)	185, 486, 860, 965, 1111
BssMI	GATC	7 cut(s)	51, 239, 359, 786, 1235, 1261, 1274
BssT1I	CCWWGG	3 cut(s)	185, 965, 1111
Bst2UI	CCWGG	2 cut(s)	488, 861
Bst4CI	ACNGT	7 cut(s)	100, 145, 318, 376, 494, 565, 1177
Bst6I	CTCTTC	4 cut(s)	59, 77, 256, 268
BstC8I	GCNNGC	3 cut(s)	503, 621, 637
BstDSI	CCRYGG	1 cut(s)	1111
BstF5I	GGATG	5 cut(s)	724, 784, 841, 979, 1277
BstFNI	CGCG	2 cut(s)	635, 1349
BstH2I	RGCGCY	1 cut(s)	1012
BstHHI	GCGC	1 cut(s)	1011
BstKTI	GATC	7 cut(s)	54, 242, 362, 789, 1238, 1264, 1277
BstMBI	GATC	7 cut(s)	51, 239, 359, 786, 1235, 1261, 1274
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 213, 479
BstNI	CCWGG	2 cut(s)	488, 861
BstSCI	CCNGG	2 cut(s)	486, 859
BstUI	CGCG	2 cut(s)	635, 1349
BstV1I	GCAGC	2 cut(s)	225, 955
BstX2I	RGATCY	2 cut(s)	239, 359
BstXI	CCANNNNNNTGG	2 cut(s)	1130, 1388
BstYI	RGATCY	2 cut(s)	239, 359
Bsu36I	CCTNAGG	1 cut(s)	948
BsuRI	GGCC	4 cut(s)	155, 560, 623, 913
BtgI	CCRYGG	1 cut(s)	1111
BtsCI	GGATG	5 cut(s)	724, 784, 841, 979, 1277
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	8 cut(s)	141, 216, 372, 667, 760, 1182, 1317, 1324
Cac8I	GCNNGC	3 cut(s)	503, 621, 637
CfoI	GCGC	1 cut(s)	1011
Cfr10I	RCCGGY	2 cut(s)	613, 619
Cfr13I	GGNCC	1 cut(s)	1437
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	5 cut(s)	61, 121, 1112, 1337, 1382
DpnI	GATC	7 cut(s)	53, 241, 361, 788, 1237, 1263, 1276
DpnII	GATC	7 cut(s)	51, 239, 359, 786, 1235, 1261, 1274
DrdI	GACNNNNNNGTC	1 cut(s)	1435
DseDI	GACNNNNNNGTC	1 cut(s)	1435
EaeI	YGGCCR	1 cut(s)	621
Eam1104I	CTCTTC	4 cut(s)	59, 77, 256, 268
EarI	CTCTTC	4 cut(s)	59, 77, 256, 268
Ecl136II	GAGCTC	1 cut(s)	639
Eco130I	CCWWGG	3 cut(s)	185, 965, 1111
Eco147I	AGGCCT	1 cut(s)	913
Eco24I	GRGCYC	2 cut(s)	443, 641
Eco47I	GGWCC	1 cut(s)	1437
Eco47III	AGCGCT	1 cut(s)	1010
Eco53kI	GAGCTC	1 cut(s)	639
Eco81I	CCTNAGG	1 cut(s)	948
EcoICRI	GAGCTC	1 cut(s)	639
EcoRI	GAATTC	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	486, 859
EcoT14I	CCWWGG	3 cut(s)	185, 965, 1111
EcoT38I	GRGCYC	2 cut(s)	443, 641
ErhI	CCWWGG	3 cut(s)	185, 965, 1111
FaeI	CATG	5 cut(s)	64, 124, 1115, 1340, 1385
FalI	AAGNNNNNCTT	4 cut(s)	56, 88, 1236, 1268
FatI	CATG	5 cut(s)	60, 120, 1111, 1336, 1381
FauNDI	CATATG	1 cut(s)	984
FbaI	TGATCA	1 cut(s)	786
Fnu4HI	GCNGC	3 cut(s)	214, 594, 944
FokI	GGATG	5 cut(s)	731, 791, 848, 986, 1264
FriOI	GRGCYC	2 cut(s)	443, 641
Fsp4HI	GCNGC	3 cut(s)	214, 594, 944
FspBI	CTAG	4 cut(s)	357, 363, 1265, 1455
GlaI	GCGC	1 cut(s)	1010
GluI	GCNGC	3 cut(s)	214, 594, 944
GsuI	CTGGAG	1 cut(s)	1427
HaeII	RGCGCY	1 cut(s)	1012
HaeIII	GGCC	4 cut(s)	155, 560, 623, 913
HapII	CCGG	4 cut(s)	608, 614, 620, 1223
HhaI	GCGC	1 cut(s)	1011
Hin1II	CATG	5 cut(s)	64, 124, 1115, 1340, 1385
Hin6I	GCGC	1 cut(s)	1009
HinP1I	GCGC	1 cut(s)	1009
HincII	GTYRAC	1 cut(s)	1462
HindII	GTYRAC	1 cut(s)	1462
HindIII	AAGCTT	3 cut(s)	499, 1137, 1422
HinfI	GANTC	4 cut(s)	458, 839, 1028, 1052
HpaII	CCGG	4 cut(s)	608, 614, 620, 1223
HphI	GGTGA	4 cut(s)	633, 775, 1037, 1403
Hpy166II	GTNNAC	3 cut(s)	192, 1332, 1462
Hpy188III	TCNNGA	5 cut(s)	357, 1208, 1259, 1406, 1440
Hpy8I	GTNNAC	3 cut(s)	192, 1332, 1462
HpyAV	CCTTC	9 cut(s)	148, 166, 345, 688, 760, 769, 1159, 1207, 1367
HpyCH4III	ACNGT	7 cut(s)	100, 145, 318, 376, 494, 565, 1177
HpyCH4V	TGCA	4 cut(s)	957, 1065, 1173, 1298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 213, 479
Hsp92II	CATG	5 cut(s)	64, 124, 1115, 1340, 1385
HspAI	GCGC	1 cut(s)	1009
KroI	GCCGGC	1 cut(s)	619
KroNI	GCCGGC	1 cut(s)	621
Ksp22I	TGATCA	1 cut(s)	786
Kzo9I	GATC	7 cut(s)	51, 239, 359, 786, 1235, 1261, 1274
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	2 cut(s)	225, 955
LweI	GCATC	2 cut(s)	1285, 1441
MaeI	CTAG	4 cut(s)	357, 363, 1265, 1455
MaeIII	GTNAC	2 cut(s)	365, 700
MalI	GATC	7 cut(s)	53, 241, 361, 788, 1237, 1263, 1276
MboI	GATC	7 cut(s)	51, 239, 359, 786, 1235, 1261, 1274
MfeI	CAATTG	2 cut(s)	588, 892
MflI	RGATCY	2 cut(s)	239, 359
MhlI	GDGCHC	3 cut(s)	184, 443, 641
MluCI	AATT	8 cut(s)	415, 547, 588, 709, 892, 932, 1168, 1394
MmeI	TCCRAC	1 cut(s)	951
MroNI	GCCGGC	1 cut(s)	619
MroXI	GAANNNNTTC	1 cut(s)	1251
MseI	TTAA	1 cut(s)	1070
MslI	CAYNNNNRTG	3 cut(s)	374, 1128, 1386
MspI	CCGG	4 cut(s)	608, 614, 620, 1223
MspR9I	CCNGG	2 cut(s)	488, 861
MunI	CAATTG	2 cut(s)	588, 892
MvaI	CCWGG	2 cut(s)	488, 861
MvnI	CGCG	2 cut(s)	635, 1349
MwoI	GCNNNNNNNGC	3 cut(s)	134, 213, 479
NaeI	GCCGGC	1 cut(s)	621
NcoI	CCATGG	1 cut(s)	1111
NdeI	CATATG	1 cut(s)	984
NdeII	GATC	7 cut(s)	51, 239, 359, 786, 1235, 1261, 1274
NgoMIV	GCCGGC	1 cut(s)	619
NlaIII	CATG	5 cut(s)	64, 124, 1115, 1340, 1385
NlaIV	GGNNCC	3 cut(s)	612, 618, 658
NmeAIII	GCCGAG	1 cut(s)	417
NmuCI	GTSAC	1 cut(s)	700
OliI	CACNNNNGTG	1 cut(s)	374
PceI	AGGCCT	1 cut(s)	913
PciSI	GCTCTTC	1 cut(s)	59
PdiI	GCCGGC	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	1251
PfeI	GAWTC	4 cut(s)	458, 839, 1028, 1052
PkrI	GCNGC	3 cut(s)	215, 595, 945
Psp124BI	GAGCTC	1 cut(s)	641
Psp6I	CCWGG	2 cut(s)	486, 859
PspGI	CCWGG	2 cut(s)	486, 859
PspN4I	GGNNCC	3 cut(s)	612, 618, 658
PspPI	GGNCC	1 cut(s)	1437
PsuI	RGATCY	2 cut(s)	239, 359
RseI	CAYNNNNRTG	3 cut(s)	374, 1128, 1386
SacI	GAGCTC	1 cut(s)	641
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	1070
SatI	GCNGC	3 cut(s)	214, 594, 944
Sau3AI	GATC	7 cut(s)	51, 239, 359, 786, 1235, 1261, 1274
Sau96I	GGNCC	1 cut(s)	1437
ScrFI	CCNGG	2 cut(s)	488, 861
SduI	GDGCHC	3 cut(s)	184, 443, 641
SfaNI	GCATC	2 cut(s)	1285, 1441
SinI	GGWCC	1 cut(s)	1437
SmiMI	CAYNNNNRTG	3 cut(s)	374, 1128, 1386
Sse9I	AATT	8 cut(s)	415, 547, 588, 709, 892, 932, 1168, 1394
SseBI	AGGCCT	1 cut(s)	913
SsiI	CCGC	5 cut(s)	389, 540, 594, 633, 1347
SspMI	CTAG	4 cut(s)	357, 363, 1265, 1455
SstI	GAGCTC	1 cut(s)	641
StuI	AGGCCT	1 cut(s)	913
StyD4I	CCNGG	2 cut(s)	486, 859
StyI	CCWWGG	3 cut(s)	185, 965, 1111
TaaI	ACNGT	7 cut(s)	100, 145, 318, 376, 494, 565, 1177
TaqI	TCGA	4 cut(s)	707, 831, 1207, 1238
TasI	AATT	8 cut(s)	415, 547, 588, 709, 892, 932, 1168, 1394
TauI	GCSGC	1 cut(s)	596
TfiI	GAWTC	4 cut(s)	458, 839, 1028, 1052
Tru1I	TTAA	1 cut(s)	1070
Tru9I	TTAA	1 cut(s)	1070
TscAI	CASTG	8 cut(s)	148, 223, 379, 667, 760, 1182, 1324, 1331
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	2 cut(s)	213, 943
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	7 cut(s)	77, 109, 756, 831, 1119, 1131, 1141
TspGWI	ACGGA	1 cut(s)	731
TspRI	CASTG	8 cut(s)	148, 223, 379, 667, 760, 1182, 1324, 1331
VpaK11BI	GGWCC	1 cut(s)	1437
XapI	RAATTY	3 cut(s)	415, 547, 932
XbaI	TCTAGA	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	1251
XspI	CTAG	4 cut(s)	357, 363, 1265, 1455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.