Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8488735.1

Orthogroup ID

OG0009791

Physical Location & Seq

Genomic Coordinates Reverse (-)

521 .. 1956

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8488735.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atgttgcttatgaccaggttggatggaagtcatatgttagagttattgagaggaaagcgcttggtttttgttggtgattctctgaacaggaatatgtgggaatctctggtttgcattttaagaaactcagcaaaagataaaagcaaggtttatgaagcccatggaagaacccattttcgtggggaagcttcatactccttcatattcaaagactataattgcacagtggagttttttgtttctcccttcttagttcgagaatgggaaatgccggataaagatggatcgaagaaagaaacacttcgtcttgatctagtcgggcgatcatccaatctatacaaagatgcagatattctcatcttcaacactggacactggtggacacatgacaaaactgcgaaagggaaagactattaccaagaaggtagccatgtctatggtgaattgaatgttctggaggcatttcggaaagctttgactacttggtccagatgggttgatgctagtgttgacacggggaaaagtatggtattctttcggggttattctgcctcccatttcagtggtggacaatggaattccggtgggcaatgtgacagtgagactctacctatctttaacgagacttatttaaggccatacccgccaaagatgctggtactagagaaggtgttgaaaaacatgaaacaccacatcacctatctcaatatcacaagattgaccgattttcggaaggatggccacccatcaatctaccggaagcaaaacctttccccagcagaaaggaaatccccaaaaagcttccaggactgcagccattggtgccttccaggtgttcctgacgcatggaatgaagttctttatgccgagctcctagtaaaactgcacaagaagaatctgcatcagcaactgcaacagcagaagaagagagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

311

Amino Acids

36.25

Weight (kDa)

9.3

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12060 AT5G06700
fragaria_vesca	FvH4_6g22040
malus_domestica	MD12G1055700.v1.1 MD14G1054900.v1.1
prunus_persica	Prupe.7G079400_v2.0.a1
pyrus_communis	pycom12g04850 pycom14g04530
rosa_chinensis	RchiOBHm_Chr3g0479331
rosa_laevigata	RLG00000023584
rosa_multiflora	Rmu_co8488735.1_g000001 Rmu_sc0006763.1_g000008 Rmu_sc0006763.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402410
rosa_rugosa	Rorug03G0174400 Rorug03G0174500
rosa_samantha	Rh3AG225400 Rh3BG258200 Rh3CG254000 Rh3DG249800
rosa_wichuraiana	Rw3G020160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	822
AciI	CCGC	1 cut(s)	644
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	739
AcsI	RAATTY	1 cut(s)	577
AfaI	GTAC	1 cut(s)	660
AfeI	AGCGCT	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	729
AgsI	TTSAA	4 cut(s)	208, 364, 448, 676
AjnI	CCWGG	3 cut(s)	14, 804, 829
AluBI	AGCT	4 cut(s)	188, 473, 801, 871
AluI	AGCT	4 cut(s)	188, 473, 801, 871
Alw21I	GWGCWC	1 cut(s)	873
Alw26I	GTCTC	2 cut(s)	596, 617
AlwI	GGATC	1 cut(s)	292
AlwNI	CAGNNNCTG	1 cut(s)	910
Aor51HI	AGCGCT	1 cut(s)	59
AoxI	GGCC	2 cut(s)	635, 739
ApeKI	GCWGC	1 cut(s)	813
ApoI	RAATTY	1 cut(s)	577
Asp700I	GAANNNNTTC	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	486
AsuHPI	GGTGA	3 cut(s)	86, 452, 688
AvaII	GGWCC	1 cut(s)	486
BalI	TGGCCA	1 cut(s)	741
BanI	GGYRCC	1 cut(s)	822
BanII	GRGCYC	1 cut(s)	873
Bbv12I	GWGCWC	1 cut(s)	873
BbvI	GCAGC	1 cut(s)	825
BccI	CCATC	5 cut(s)	17, 275, 486, 731, 754
BciT130I	CCWGG	3 cut(s)	16, 806, 831
BcoDI	GTCTC	2 cut(s)	596, 617
BfaI	CTAG	4 cut(s)	314, 504, 662, 875
BfmI	CTRYAG	1 cut(s)	811
BfoI	RGCGCY	1 cut(s)	61
BisI	GCNGC	1 cut(s)	814
BlsI	GCNGC	1 cut(s)	815
Bme1390I	CCNGG	3 cut(s)	16, 806, 831
Bme18I	GGWCC	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	486
BmiI	GGNNCC	1 cut(s)	824
BmrFI	CCNGG	3 cut(s)	16, 806, 831
BmsI	GCATC	4 cut(s)	334, 490, 642, 910
BpmI	CTGGAG	1 cut(s)	476
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	2 cut(s)	581, 756
Bsc4I	CCNNNNNNNGG	1 cut(s)	729
Bse1I	ACTGG	2 cut(s)	373, 380
Bse3DI	GCAATG	1 cut(s)	596
BseBI	CCWGG	3 cut(s)	16, 806, 831
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	3 cut(s)	28, 326, 742
BseLI	CCNNNNNNNGG	1 cut(s)	729
BseMI	GCAATG	1 cut(s)	596
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	373, 380
BseXI	GCAGC	1 cut(s)	825
BseYI	CCCAGC	1 cut(s)	775
BsgI	GTGCAG	1 cut(s)	869
BshFI	GGCC	2 cut(s)	637, 741
BshNI	GGYRCC	1 cut(s)	822
BsiHKAI	GWGCWC	1 cut(s)	873
BsiSI	CCGG	3 cut(s)	272, 582, 757
BslI	CCNNNNNNNGG	1 cut(s)	729
BsmAI	GTCTC	2 cut(s)	596, 617
BsnI	GGCC	2 cut(s)	637, 741
Bsp1286I	GDGCHC	1 cut(s)	873
Bsp143I	GATC	3 cut(s)	284, 310, 323
Bsp19I	CCATGG	1 cut(s)	160
BspACI	CCGC	1 cut(s)	644
BspANI	GGCC	2 cut(s)	637, 741
BspCNI	CTCAG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	824
BspMAI	CTGCAG	1 cut(s)	815
BspPI	GGATC	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	822
BsrDI	GCAATG	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	373, 380
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	3 cut(s)	284, 310, 323
BssT1I	CCWWGG	1 cut(s)	160
Bst2UI	CCWGG	3 cut(s)	16, 806, 831
Bst4CI	ACNGT	2 cut(s)	226, 599
Bst6I	CTCTTC	1 cut(s)	920
BstDEI	CTNAG	2 cut(s)	127, 250
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	3 cut(s)	28, 326, 742
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	3 cut(s)	287, 313, 326
BstMAI	GTCTC	2 cut(s)	596, 617
BstMBI	GATC	3 cut(s)	284, 310, 323
BstMWI	GCNNNNNNNGC	3 cut(s)	643, 652, 822
BstNI	CCWGG	3 cut(s)	16, 806, 831
BstSCI	CCNGG	3 cut(s)	14, 804, 829
BstSFI	CTRYAG	1 cut(s)	811
BstV1I	GCAGC	1 cut(s)	825
BstXI	CCANNNNNNTGG	3 cut(s)	179, 437, 563
BsuRI	GGCC	2 cut(s)	637, 741
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	28, 326, 742
BtsIMutI	CAGTG	5 cut(s)	231, 366, 373, 568, 604
CaiI	CAGNNNCTG	1 cut(s)	910
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	486
CseI	GACGC	1 cut(s)	851
CsiI	ACCWGGT	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	659
CviAII	CATG	5 cut(s)	161, 386, 431, 682, 846
CviJI	RGCY	9 cut(s)	158, 188, 429, 473, 637, 741, 801, 816, 871
CviKI_1	RGCY	9 cut(s)	158, 188, 429, 473, 637, 741, 801, 816, 871
CviQI	GTAC	1 cut(s)	659
DdeI	CTNAG	2 cut(s)	127, 250
DpnI	GATC	3 cut(s)	286, 312, 325
DpnII	GATC	3 cut(s)	284, 310, 323
DrdI	GACNNNNNNGTC	1 cut(s)	484
DseDI	GACNNNNNNGTC	1 cut(s)	484
EaeI	YGGCCR	1 cut(s)	739
Eam1104I	CTCTTC	1 cut(s)	920
EarI	CTCTTC	1 cut(s)	920
Ecl136II	GAGCTC	1 cut(s)	871
Eco130I	CCWWGG	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	873
Eco47I	GGWCC	1 cut(s)	486
Eco47III	AGCGCT	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	871
EcoICRI	GAGCTC	1 cut(s)	871
EcoRI	GAATTC	1 cut(s)	577
EcoRII	CCWGG	3 cut(s)	14, 804, 829
EcoT14I	CCWWGG	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	5 cut(s)	164, 389, 434, 685, 849
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FatI	CATG	5 cut(s)	160, 385, 430, 681, 845
FauI	CCCGC	1 cut(s)	651
FauNDI	CATATG	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	814
FokI	GGATG	3 cut(s)	35, 313, 749
FriOI	GRGCYC	1 cut(s)	873
Fsp4HI	GCNGC	1 cut(s)	814
FspBI	CTAG	4 cut(s)	314, 504, 662, 875
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	814
GsaI	CCCAGC	1 cut(s)	779
GsuI	CTGGAG	1 cut(s)	476
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	637, 741
HapII	CCGG	3 cut(s)	272, 582, 757
HgaI	GACGC	1 cut(s)	851
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	5 cut(s)	164, 389, 434, 685, 849
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	3 cut(s)	186, 471, 799
HinfI	GANTC	4 cut(s)	77, 101, 604, 895
HpaII	CCGG	3 cut(s)	272, 582, 757
HphI	GGTGA	3 cut(s)	86, 452, 688
Hpy166II	GTNNAC	3 cut(s)	381, 511, 569
Hpy188I	TCNGA	3 cut(s)	84, 468, 732
Hpy188III	TCNNGA	5 cut(s)	257, 308, 455, 489, 839
Hpy8I	GTNNAC	3 cut(s)	381, 511, 569
HpyAV	CCTTC	6 cut(s)	208, 256, 416, 661, 727, 836
HpyCH4III	ACNGT	2 cut(s)	226, 599
HpyCH4V	TGCA	7 cut(s)	114, 222, 347, 813, 886, 901, 913
HpyF10VI	GCNNNNNNNGC	3 cut(s)	643, 652, 822
HpyF3I	CTNAG	2 cut(s)	127, 250
Hsp92II	CATG	5 cut(s)	164, 389, 434, 685, 849
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	284, 310, 323
LmnI	GCTCC	1 cut(s)	876
Lsp1109I	GCAGC	1 cut(s)	825
LweI	GCATC	4 cut(s)	334, 490, 642, 910
MabI	ACCWGGT	1 cut(s)	14
MaeI	CTAG	4 cut(s)	314, 504, 662, 875
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	3 cut(s)	286, 312, 325
MboI	GATC	3 cut(s)	284, 310, 323
MboII	GAAGA	5 cut(s)	177, 301, 352, 904, 934
MhlI	GDGCHC	1 cut(s)	873
MlsI	TGGCCA	1 cut(s)	741
MluCI	AATT	3 cut(s)	217, 443, 577
MluNI	TGGCCA	1 cut(s)	741
MlyI	GAGTC	1 cut(s)	598
MnlI	CCTC	3 cut(s)	44, 451, 562
Mox20I	TGGCCA	1 cut(s)	741
MroXI	GAANNNNTTC	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	741
MseI	TTAA	3 cut(s)	119, 618, 632
MslI	CAYNNNNRTG	3 cut(s)	177, 435, 561
Msp20I	TGGCCA	1 cut(s)	741
MspI	CCGG	3 cut(s)	272, 582, 757
MspR9I	CCNGG	3 cut(s)	16, 806, 831
MvaI	CCWGG	3 cut(s)	16, 806, 831
MwoI	GCNNNNNNNGC	3 cut(s)	643, 652, 822
NcoI	CCATGG	1 cut(s)	160
NdeI	CATATG	1 cut(s)	33
NdeII	GATC	3 cut(s)	284, 310, 323
NlaIII	CATG	5 cut(s)	164, 389, 434, 685, 849
NlaIV	GGNNCC	1 cut(s)	824
NmeAIII	GCCGAG	1 cut(s)	892
NmuCI	GTSAC	1 cut(s)	593
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	3 cut(s)	77, 101, 895
PfoI	TCCNGGA	1 cut(s)	804
PkrI	GCNGC	1 cut(s)	815
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
Psp124BI	GAGCTC	1 cut(s)	873
Psp6I	CCWGG	3 cut(s)	14, 804, 829
PspFI	CCCAGC	1 cut(s)	775
PspGI	CCWGG	3 cut(s)	14, 804, 829
PspN4I	GGNNCC	1 cut(s)	824
PspPI	GGNCC	1 cut(s)	486
PstI	CTGCAG	1 cut(s)	815
PstNI	CAGNNNCTG	1 cut(s)	910
RsaI	GTAC	1 cut(s)	660
RsaNI	GTAC	1 cut(s)	659
RseI	CAYNNNNRTG	3 cut(s)	177, 435, 561
SacI	GAGCTC	1 cut(s)	873
SaqAI	TTAA	3 cut(s)	119, 618, 632
SatI	GCNGC	1 cut(s)	814
Sau3AI	GATC	3 cut(s)	284, 310, 323
Sau96I	GGNCC	1 cut(s)	486
SchI	GAGTC	1 cut(s)	598
ScrFI	CCNGG	3 cut(s)	16, 806, 831
SduI	GDGCHC	1 cut(s)	873
SexAI	ACCWGGT	1 cut(s)	14
SfaNI	GCATC	4 cut(s)	334, 490, 642, 910
SfcI	CTRYAG	1 cut(s)	811
SinI	GGWCC	1 cut(s)	486
SmiMI	CAYNNNNRTG	3 cut(s)	177, 435, 561
Sse9I	AATT	3 cut(s)	217, 443, 577
SsiI	CCGC	1 cut(s)	644
SspMI	CTAG	4 cut(s)	314, 504, 662, 875
SstI	GAGCTC	1 cut(s)	873
StyD4I	CCNGG	3 cut(s)	14, 804, 829
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	226, 599
TaqI	TCGA	2 cut(s)	256, 287
TaqII	GACCGA	1 cut(s)	737
TasI	AATT	3 cut(s)	217, 443, 577
TfiI	GAWTC	3 cut(s)	77, 101, 895
Tru1I	TTAA	3 cut(s)	119, 618, 632
Tru9I	TTAA	3 cut(s)	119, 618, 632
TscAI	CASTG	5 cut(s)	231, 373, 380, 568, 604
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	1 cut(s)	813
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	5 cut(s)	168, 180, 190, 698, 867
TspRI	CASTG	5 cut(s)	231, 373, 380, 568, 604
VpaK11BI	GGWCC	1 cut(s)	486
XapI	RAATTY	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	4 cut(s)	314, 504, 662, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.