Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006763.1

Orthogroup ID

OG0009791

Physical Location & Seq

Genomic Coordinates Reverse (-)

59894 .. 60505

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006763.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggctgaggcaacaaagcacaacaacctacccatcaatggtggaacattgatctcagacatgaagagcctcttctccatcatcaaaaccagaagaactgttgcctttgcgtatggcttcatgtttgcctttgttgccttcactgttttcttggccttcaatccaaacccgaactctagtgctccttggttcactaacatattcagcaccagcagcactgccactacttctggtagtggatctcagttctcttctttcttctaccccaatgcttcttcttcttcttcttcctcctcctcccaacagttccaaacttttgttccttctccacaaacacagccatctagatctagtaacaccactgtgaataaacaaccgccgagccaaactcagcccattgtgaattctgataaaccacaagttttgagcccaaatcagacatcagattccccatctaatgcttccttagcgacccaggacagttcaagtttgcctaaacaaacccttgtgaaaaaccaaactcagaccaccgcaaattctgataaggccacagttttagaggcaaatcagaccacaattgccgccccaataactccggtgccggtgctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

203

Amino Acids

21.59

Weight (kDa)

9.63

Isoelectric Point (pI)

61.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12060 AT5G06700
fragaria_vesca	FvH4_6g22040
malus_domestica	MD12G1055700.v1.1 MD14G1054900.v1.1
prunus_persica	Prupe.7G079400_v2.0.a1
pyrus_communis	pycom12g04850 pycom14g04530
rosa_chinensis	RchiOBHm_Chr3g0479331
rosa_laevigata	RLG00000023584
rosa_multiflora	Rmu_co8488735.1_g000001 Rmu_sc0006763.1_g000008 Rmu_sc0006763.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402410
rosa_rugosa	Rorug03G0174400 Rorug03G0174500
rosa_samantha	Rh3AG225400 Rh3BG258200 Rh3CG254000 Rh3DG249800
rosa_wichuraiana	Rw3G020160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	598
AciI	CCGC	3 cut(s)	377, 531, 582
AclWI	GGATC	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	403, 535
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	160, 486
AjnI	CCWGG	1 cut(s)	474
AjuI	GAANNNNNNNTTGG	2 cut(s)	303, 335
AleI	CACNNNNGTG	1 cut(s)	362
Alw21I	GWGCWC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	247
AoxI	GGCC	2 cut(s)	153, 546
ApeKI	GCWGC	1 cut(s)	213
ApoI	RAATTY	2 cut(s)	403, 535
BanI	GGYRCC	1 cut(s)	598
BanII	GRGCYC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	184
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	4 cut(s)	41, 86, 349, 460
BciT130I	CCWGG	1 cut(s)	476
BfaI	CTAG	3 cut(s)	177, 345, 351
BglII	AGATCT	1 cut(s)	347
BisI	GCNGC	2 cut(s)	214, 582
BlsI	GCNGC	2 cut(s)	215, 583
Bme1390I	CCNGG	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	1 cut(s)	476
BplI	GAGNNNNNCTC	2 cut(s)	373, 405
Bpu10I	CCTNAGC	2 cut(s)	6, 466
BsaJI	CCNNGG	2 cut(s)	185, 474
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	601
BseBI	CCWGG	1 cut(s)	476
BseDI	CCNNGG	2 cut(s)	185, 474
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	4 cut(s)	69, 257, 404, 536
BseRI	GAGGAG	2 cut(s)	283, 286
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	2 cut(s)	155, 548
BshNI	GGYRCC	1 cut(s)	598
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	596, 602
BslI	CCNNNNNNNGG	1 cut(s)	38
BsnI	GGCC	2 cut(s)	155, 548
Bsp1286I	GDGCHC	2 cut(s)	184, 431
Bsp143I	GATC	3 cut(s)	51, 239, 347
BspACI	CCGC	3 cut(s)	377, 531, 582
BspANI	GGCC	2 cut(s)	155, 548
BspCNI	CTCAG	4 cut(s)	68, 256, 403, 535
BspLI	GGNNCC	1 cut(s)	600
BspPI	GGATC	1 cut(s)	247
BspQI	GCTCTTC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	598
BsrFI	RCCGGY	1 cut(s)	601
BssAI	RCCGGY	1 cut(s)	601
BssECI	CCNNGG	2 cut(s)	185, 474
BssMI	GATC	3 cut(s)	51, 239, 347
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	6 cut(s)	100, 145, 306, 364, 482, 553
Bst6I	CTCTTC	3 cut(s)	59, 77, 256
BstDEI	CTNAG	6 cut(s)	6, 55, 243, 390, 466, 522
BstKTI	GATC	3 cut(s)	54, 242, 350
BstMBI	GATC	3 cut(s)	51, 239, 347
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 213, 467
BstNI	CCWGG	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	2 cut(s)	239, 347
BstYI	RGATCY	2 cut(s)	239, 347
BsuRI	GGCC	2 cut(s)	155, 548
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	3 cut(s)	141, 216, 360
Cfr10I	RCCGGY	1 cut(s)	601
CspCI	CAANNNNNGTGG	2 cut(s)	405, 440
CviAII	CATG	2 cut(s)	61, 121
CviJI	RGCY	9 cut(s)	5, 69, 117, 155, 340, 384, 394, 429, 548
CviKI_1	RGCY	9 cut(s)	5, 69, 117, 155, 340, 384, 394, 429, 548
DdeI	CTNAG	6 cut(s)	6, 55, 243, 390, 466, 522
DpnI	GATC	3 cut(s)	53, 241, 349
DpnII	GATC	3 cut(s)	51, 239, 347
Eam1104I	CTCTTC	3 cut(s)	59, 77, 256
EarI	CTCTTC	3 cut(s)	59, 77, 256
Eco130I	CCWWGG	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	431
EcoRI	GAATTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	2 cut(s)	64, 124
FaiI	YATR	5 cut(s)	62, 114, 122, 200, 610
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FatI	CATG	2 cut(s)	60, 120
Fnu4HI	GCNGC	2 cut(s)	214, 582
FriOI	GRGCYC	1 cut(s)	431
Fsp4HI	GCNGC	2 cut(s)	214, 582
FspBI	CTAG	3 cut(s)	177, 345, 351
GluI	GCNGC	2 cut(s)	214, 582
HaeIII	GGCC	2 cut(s)	155, 548
HapII	CCGG	2 cut(s)	596, 602
Hin1II	CATG	2 cut(s)	64, 124
HinfI	GANTC	1 cut(s)	446
HpaII	CCGG	2 cut(s)	596, 602
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	7 cut(s)	58, 409, 438, 445, 525, 541, 570
Hpy188III	TCNNGA	1 cut(s)	345
Hpy8I	GTNNAC	1 cut(s)	192
HpyAV	CCTTC	3 cut(s)	148, 166, 333
HpyCH4III	ACNGT	6 cut(s)	100, 145, 306, 364, 482, 553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 213, 467
HpyF3I	CTNAG	6 cut(s)	6, 55, 243, 390, 466, 522
Hsp92II	CATG	2 cut(s)	64, 124
Kzo9I	GATC	3 cut(s)	51, 239, 347
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	5 cut(s)	103, 216, 223, 461, 488
Lsp1109I	GCAGC	1 cut(s)	225
MaeI	CTAG	3 cut(s)	177, 345, 351
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	3 cut(s)	53, 241, 349
MboI	GATC	3 cut(s)	51, 239, 347
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	2 cut(s)	239, 347
MhlI	GDGCHC	2 cut(s)	184, 431
MluCI	AATT	3 cut(s)	403, 535, 576
MnlI	CCTC	5 cut(s)	80, 301, 304, 307, 553
MslI	CAYNNNNRTG	1 cut(s)	362
MspI	CCGG	2 cut(s)	596, 602
MspR9I	CCNGG	1 cut(s)	476
MunI	CAATTG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	3 cut(s)	134, 213, 467
NdeII	GATC	3 cut(s)	51, 239, 347
NlaIII	CATG	2 cut(s)	64, 124
NlaIV	GGNNCC	1 cut(s)	600
NmeAIII	GCCGAG	1 cut(s)	405
OliI	CACNNNNGTG	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	215, 583
Psp6I	CCWGG	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	600
PsuI	RGATCY	2 cut(s)	239, 347
RseI	CAYNNNNRTG	1 cut(s)	362
SapI	GCTCTTC	1 cut(s)	59
SatI	GCNGC	2 cut(s)	214, 582
Sau3AI	GATC	3 cut(s)	51, 239, 347
ScrFI	CCNGG	1 cut(s)	476
SduI	GDGCHC	2 cut(s)	184, 431
SetI	ASST	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	403, 535, 576
SsiI	CCGC	3 cut(s)	377, 531, 582
SspMI	CTAG	3 cut(s)	177, 345, 351
StyD4I	CCNGG	1 cut(s)	474
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	6 cut(s)	100, 145, 306, 364, 482, 553
TasI	AATT	3 cut(s)	403, 535, 576
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	1 cut(s)	446
TscAI	CASTG	3 cut(s)	148, 223, 367
TseI	GCWGC	1 cut(s)	213
TspDTI	ATGAA	2 cut(s)	77, 109
TspRI	CASTG	3 cut(s)	148, 223, 367
XapI	RAATTY	2 cut(s)	403, 535
XbaI	TCTAGA	1 cut(s)	344
XspI	CTAG	3 cut(s)	177, 345, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.