Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006763.1

Orthogroup ID

OG0009791

Physical Location & Seq

Genomic Coordinates Reverse (-)

55999 .. 56688

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006763.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atggctgaggcaacaaagcacaacaacctacccatcaatggtggaacattgatctcagacatgaagagcctcttctccatcatcaaaaccagaagaactgttgcctttgcctatggcttcatgtttgcctttgttgccttcactgttttcttggccttcaatccaaacccgaactctggtgctccttggttcactaacatattcagcatcagcggcactgctactacttctggtagtggatctcagttctcttcctttttctcttctttcttctaccccaatgcttcttcttcttcttcctcctcctcctcccaacagttccaaagttttgttccttctccacaaacacagccatctagatctagtaacaccactgtgaataaacaaccgccgagccaaactcagcccattgtgaattctgatcaaccacaagttttgagcccaaatcagacatcagattccccatctaacacttccttagcgacccaggacagttcaagtttgcctaaacaaacccttgtgaaaaaccaaactcagaccaccgcaaattctgataaggccacagtttcagaggcaaatcagaccacaattgccgccccaataactccggtggttgttttgttgggagttgggactggattcttagtcgtgagagctaagtctagtatatattttgtttctttggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

229

Amino Acids

24.3

Weight (kDa)

9.75

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12060 AT5G06700
fragaria_vesca	FvH4_6g22040
malus_domestica	MD12G1055700.v1.1 MD14G1054900.v1.1
prunus_persica	Prupe.7G079400_v2.0.a1
pyrus_communis	pycom12g04850 pycom14g04530
rosa_chinensis	RchiOBHm_Chr3g0479331
rosa_laevigata	RLG00000023584
rosa_multiflora	Rmu_co8488735.1_g000001 Rmu_sc0006763.1_g000008 Rmu_sc0006763.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402410
rosa_rugosa	Rorug03G0174400 Rorug03G0174500
rosa_samantha	Rh3AG225400 Rh3BG258200 Rh3CG254000 Rh3DG249800
rosa_wichuraiana	Rw3G020160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	213, 389, 543, 594
AclWI	GGATC	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	415, 547
AfiI	CCNNNNNNNGG	2 cut(s)	38, 176
AgsI	TTSAA	2 cut(s)	160, 498
AjnI	CCWGG	1 cut(s)	486
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AleI	CACNNNNGTG	1 cut(s)	374
AluBI	AGCT	1 cut(s)	656
AluI	AGCT	1 cut(s)	656
Alw21I	GWGCWC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	247
AoxI	GGCC	2 cut(s)	153, 558
ApoI	RAATTY	2 cut(s)	415, 547
BanII	GRGCYC	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	184
BbvCI	CCTCAGC	1 cut(s)	6
BccI	CCATC	4 cut(s)	41, 86, 361, 472
BciT130I	CCWGG	1 cut(s)	488
BclI	TGATCA	1 cut(s)	421
BfaI	CTAG	3 cut(s)	357, 363, 663
BglII	AGATCT	1 cut(s)	359
BisI	GCNGC	2 cut(s)	214, 594
BlsI	GCNGC	2 cut(s)	215, 595
Bme1390I	CCNGG	1 cut(s)	488
BmrFI	CCNGG	1 cut(s)	488
BmsI	GCATC	1 cut(s)	216
BplI	GAGNNNNNCTC	2 cut(s)	385, 417
Bpu10I	CCTNAGC	2 cut(s)	6, 478
BsaJI	CCNNGG	2 cut(s)	185, 486
BsaWI	WCCGGW	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 176
Bse1I	ACTGG	1 cut(s)	640
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	2 cut(s)	185, 486
BseLI	CCNNNNNNNGG	2 cut(s)	38, 176
BseMII	CTCAG	4 cut(s)	69, 257, 416, 548
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	3 cut(s)	292, 295, 298
BshFI	GGCC	2 cut(s)	155, 560
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	608
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	2 cut(s)	38, 176
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	2 cut(s)	155, 560
Bsp1286I	GDGCHC	2 cut(s)	184, 443
Bsp143I	GATC	4 cut(s)	51, 239, 359, 421
BspACI	CCGC	4 cut(s)	213, 389, 543, 594
BspANI	GGCC	2 cut(s)	155, 560
BspCNI	CTCAG	4 cut(s)	68, 256, 415, 547
BspPI	GGATC	1 cut(s)	247
BspQI	GCTCTTC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	640
BssECI	CCNNGG	2 cut(s)	185, 486
BssMI	GATC	4 cut(s)	51, 239, 359, 421
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	6 cut(s)	100, 145, 318, 376, 494, 565
Bst6I	CTCTTC	4 cut(s)	59, 77, 256, 268
BstDEI	CTNAG	8 cut(s)	6, 55, 243, 402, 478, 534, 643, 657
BstKTI	GATC	4 cut(s)	54, 242, 362, 424
BstMBI	GATC	4 cut(s)	51, 239, 359, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 213
BstNI	CCWGG	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	486
BstX2I	RGATCY	2 cut(s)	239, 359
BstYI	RGATCY	2 cut(s)	239, 359
BsuRI	GGCC	2 cut(s)	155, 560
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	3 cut(s)	141, 216, 372
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	2 cut(s)	61, 121
DdeI	CTNAG	8 cut(s)	6, 55, 243, 402, 478, 534, 643, 657
DpnI	GATC	4 cut(s)	53, 241, 361, 423
DpnII	GATC	4 cut(s)	51, 239, 359, 421
Eam1104I	CTCTTC	4 cut(s)	59, 77, 256, 268
EarI	CTCTTC	4 cut(s)	59, 77, 256, 268
Eco130I	CCWWGG	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	443
EcoRI	GAATTC	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	2 cut(s)	64, 124
FaiI	YATR	6 cut(s)	62, 114, 122, 200, 668, 670
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	2 cut(s)	60, 120
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	214, 594
FriOI	GRGCYC	1 cut(s)	443
Fsp4HI	GCNGC	2 cut(s)	214, 594
FspBI	CTAG	3 cut(s)	357, 363, 663
GluI	GCNGC	2 cut(s)	214, 594
HaeIII	GGCC	2 cut(s)	155, 560
HapII	CCGG	1 cut(s)	608
Hin1II	CATG	2 cut(s)	64, 124
HinfI	GANTC	2 cut(s)	458, 639
HpaII	CCGG	1 cut(s)	608
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	9 cut(s)	58, 421, 450, 457, 537, 553, 571, 582, 689
Hpy188III	TCNNGA	2 cut(s)	357, 649
Hpy8I	GTNNAC	1 cut(s)	192
HpyAV	CCTTC	3 cut(s)	148, 166, 345
HpyCH4III	ACNGT	6 cut(s)	100, 145, 318, 376, 494, 565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 213
HpyF3I	CTNAG	8 cut(s)	6, 55, 243, 402, 478, 534, 643, 657
Hsp92II	CATG	2 cut(s)	64, 124
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	51, 239, 359, 421
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	7 cut(s)	103, 162, 216, 473, 500, 621, 621
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	3 cut(s)	357, 363, 663
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	4 cut(s)	53, 241, 361, 423
MboI	GATC	4 cut(s)	51, 239, 359, 421
MfeI	CAATTG	1 cut(s)	588
MflI	RGATCY	2 cut(s)	239, 359
MhlI	GDGCHC	2 cut(s)	184, 443
MluCI	AATT	3 cut(s)	415, 547, 588
MnlI	CCTC	6 cut(s)	80, 310, 313, 316, 319, 565
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	1 cut(s)	488
MunI	CAATTG	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	488
MwoI	GCNNNNNNNGC	2 cut(s)	134, 213
NdeII	GATC	4 cut(s)	51, 239, 359, 421
NlaIII	CATG	2 cut(s)	64, 124
NmeAIII	GCCGAG	1 cut(s)	417
OliI	CACNNNNGTG	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	458, 639
PkrI	GCNGC	2 cut(s)	215, 595
Psp6I	CCWGG	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	486
PsuI	RGATCY	2 cut(s)	239, 359
RseI	CAYNNNNRTG	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	59
SatI	GCNGC	2 cut(s)	214, 594
Sau3AI	GATC	4 cut(s)	51, 239, 359, 421
ScrFI	CCNGG	1 cut(s)	488
SduI	GDGCHC	2 cut(s)	184, 443
SetI	ASST	2 cut(s)	30, 658
SfaNI	GCATC	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	374
Sse9I	AATT	3 cut(s)	415, 547, 588
SsiI	CCGC	4 cut(s)	213, 389, 543, 594
SspMI	CTAG	3 cut(s)	357, 363, 663
StyD4I	CCNGG	1 cut(s)	486
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	6 cut(s)	100, 145, 318, 376, 494, 565
TasI	AATT	3 cut(s)	415, 547, 588
TauI	GCSGC	2 cut(s)	216, 596
TfiI	GAWTC	2 cut(s)	458, 639
TscAI	CASTG	3 cut(s)	148, 223, 379
TspDTI	ATGAA	2 cut(s)	77, 109
TspRI	CASTG	3 cut(s)	148, 223, 379
XapI	RAATTY	2 cut(s)	415, 547
XbaI	TCTAGA	1 cut(s)	356
XspI	CTAG	3 cut(s)	357, 363, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.