pycom12g06680

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0011429
Physical Location & Seq
Forward (+)
6933001 .. 6935896
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGCCTCCCAATCTCCGAGTTACGCTCCTCAACGCTCTATTGAAGGATGGATCGATATTGATCACTGGAATACATGAAGAGGTACAGGAAGATGATCTTTTTAATGTATTTGGCGACTATGGAGCAATCAAGGATTTGCATCTGAATCTTGACCGTCGCACTGGATTTGTTAAGGGTTATGTGCTGATTGAATATGAGAAGTTTGAGGAAGCTAAGGCAGCAATATCGGGAATGAATGGTGCCAAACTTTTTGGTCAAACCATATCTGGTGATTGGGCCTTCAGTACTGGTTCCTTTGGAGGCAATTTAAGGTCACCGGAATTAAACCGTTCTCGAAGTCCAAGGAGGAGATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 map03013 map03015 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

119

Amino Acids

13.19

Weight (kDa)

6.73

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 19 - 88 1.6e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011429)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51510
fragaria_vesca FvH4_3g28440
malus_domestica MD03G1171900.v1.1 MD11G1189700.v1.1 MD12G1080200.v1.1
prunus_persica Prupe.4G255000_v2.0.a1 Prupe.7G055300_v2.0.a1
pyrus_communis pycom03g12900 pycom11g16600 pycom12g06680
rosa_chinensis RchiOBHm_Chr5g0053031
rosa_laevigata RLG00000034777
rosa_multiflora Rmu_sc0006573.1_g000011
rosa_roxburghii Rroxscaffold_1G00028840
rosa_rugosa Rorug05G0268700
rosa_samantha Rh5AG340900 Rh5BG351500 Rh5CG377700 Rh5DG367900
rosa_wichuraiana Rw5G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AclWI GGATC 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 265
AfaI GTAC 2 cut(s) 84, 286
AgsI TTSAA 2 cut(s) 43, 191
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
AlwI GGATC 1 cut(s) 58
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 2 cut(s) 281, 306
BanI GGYRCC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 41
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BclI TGATCA 1 cut(s) 60
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmcAI AGTACT 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 2 cut(s) 241, 292
BmsI GCATC 1 cut(s) 148
BplI GAGNNNNNCTC 2 cut(s) 9, 41
Bpu10I CCTNAGC 1 cut(s) 213
Bsa29I ATCGAT 1 cut(s) 53
BsaBI GATNNNNATC 2 cut(s) 59, 138
BsaJI CCNNGG 1 cut(s) 341
BsaWI WCCGGW 1 cut(s) 316
Bse1I ACTGG 3 cut(s) 70, 166, 292
Bse8I GATNNNNATC 2 cut(s) 59, 138
BseCI ATCGAT 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 341
BseGI GGATG 1 cut(s) 52
BseJI GATNNNNATC 2 cut(s) 59, 138
BseNI ACTGG 3 cut(s) 70, 166, 292
BseRI GAGGAG 1 cut(s) 17
BseXI GCAGC 1 cut(s) 230
BshFI GGCC 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 239
BshVI ATCGAT 1 cut(s) 53
BsiSI CCGG 1 cut(s) 317
BsnI GGCC 1 cut(s) 278
Bsp143I GATC 3 cut(s) 50, 60, 94
BspANI GGCC 1 cut(s) 278
BspDI ATCGAT 1 cut(s) 53
BspLI GGNNCC 2 cut(s) 241, 292
BspPI GGATC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 239
BsrI ACTGG 3 cut(s) 70, 166, 292
BssECI CCNNGG 1 cut(s) 341
BssMI GATC 3 cut(s) 50, 60, 94
BssT1I CCWWGG 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 155, 329
Bst6I CTCTTC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 213
BstEII GGTNACC 1 cut(s) 312
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 3 cut(s) 53, 63, 97
BstMBI GATC 3 cut(s) 50, 60, 94
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstPI GGTNACC 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 230
Bsu15I ATCGAT 1 cut(s) 53
BsuRI GGCC 1 cut(s) 278
BsuTUI ATCGAT 1 cut(s) 53
BtsCI GGATG 1 cut(s) 52
BtsIMutI CAGTG 2 cut(s) 63, 159
Cfr13I GGNCC 1 cut(s) 276
ClaI ATCGAT 1 cut(s) 53
Csp6I GTAC 2 cut(s) 83, 285
CviAII CATG 1 cut(s) 74
CviJI RGCY 2 cut(s) 212, 278
CviKI_1 RGCY 2 cut(s) 212, 278
CviQI GTAC 2 cut(s) 83, 285
DdeI CTNAG 1 cut(s) 213
DpnI GATC 3 cut(s) 52, 62, 96
DpnII GATC 3 cut(s) 50, 60, 94
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 265
Eco91I GGTNACC 1 cut(s) 312
EcoO65I GGTNACC 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 341
FaeI CATG 1 cut(s) 77
FaiI YATR 5 cut(s) 75, 120, 180, 195, 263
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FatI CATG 1 cut(s) 73
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 317
Hin1II CATG 1 cut(s) 77
HinfI GANTC 1 cut(s) 145
HpaII CCGG 1 cut(s) 317
HphI GGTGA 2 cut(s) 281, 306
Hpy188I TCNGA 2 cut(s) 17, 144
Hpy188III TCNNGA 3 cut(s) 149, 228, 333
Hpy99I CGWCG 1 cut(s) 159
HpyAV CCTTC 2 cut(s) 37, 289
HpyCH4III ACNGT 2 cut(s) 155, 329
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 1 cut(s) 77
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 3 cut(s) 50, 60, 94
LmnI GCTCC 2 cut(s) 30, 122
LpnPI CCDG 6 cut(s) 51, 71, 147, 252, 273, 330
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 2 cut(s) 19, 312
MalI GATC 3 cut(s) 52, 62, 96
MboI GATC 3 cut(s) 50, 60, 94
MboII GAAGA 2 cut(s) 89, 101
MluCI AATT 2 cut(s) 304, 320
MnlI CCTC 6 cut(s) 15, 38, 73, 199, 293, 339
MseI TTAA 4 cut(s) 102, 171, 308, 323
MspI CCGG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 3 cut(s) 50, 60, 94
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 2 cut(s) 241, 292
NmuCI GTSAC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 1 cut(s) 220
PspEI GGTNACC 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 241, 292
PspPI GGNCC 1 cut(s) 276
RsaI GTAC 2 cut(s) 84, 286
RsaNI GTAC 2 cut(s) 83, 285
SaqAI TTAA 4 cut(s) 102, 171, 308, 323
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 3 cut(s) 50, 60, 94
Sau96I GGNCC 1 cut(s) 276
ScaI AGTACT 1 cut(s) 286
SetI ASST 3 cut(s) 84, 214, 314
SfaNI GCATC 1 cut(s) 148
Sse9I AATT 2 cut(s) 304, 320
StyI CCWWGG 1 cut(s) 341
TaaI ACNGT 2 cut(s) 155, 329
TaqI TCGA 2 cut(s) 53, 334
TasI AATT 2 cut(s) 304, 320
TatI WGTACW 1 cut(s) 284
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 4 cut(s) 102, 171, 308, 323
Tru9I TTAA 4 cut(s) 102, 171, 308, 323
TscAI CASTG 2 cut(s) 70, 166
TseFI GTSAC 1 cut(s) 312
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 312
TspDTI ATGAA 2 cut(s) 90, 248
TspRI CASTG 2 cut(s) 70, 166
ZrmI AGTACT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.