Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0016879

Physical Location & Seq

Genomic Coordinates Reverse (-)

15050945 .. 15052537

Gene Structure 1593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGTTAGGTCATGTTGGAGGCCATCTGCAGTGGATGATGGACCTCGACGTGGTGGGGAAACCAGCGGCCAGGTTGATGGGTTGTTGTGGTACAAGGACTTTGGGCAGCATGCTTGGGGAAAATTCTCAATGGCTGCCGTTCAGGCCAATTCTGTTATCGAGGATCAAAGCCAGCTCGAATCCGGTCCTTTGTGCGGAACAAAATCTGGTCTGGGAACTTTCGTTGGAGTTTATGATGGACATGGAGGGCCTGAAGCTTCAAGATATGTCAATGAAAATCTCTTCCGCAATCTAAAAAGGATTGCAGCTGAGCATCGATGCATGTCGGAAAACGTGATCGAGAAGGCGTACTTGGCAACGGAGGAGAGTTTTCTATCGGTGGTGAAGAAGCAGTGGCAAAGCAAGCCACAAATTGCATCTGCAGGAACATGTTGTTTGGTGGGGATAATCTGCAATGGACTGCTTTACACAGCAAATGTTGGGGACTCTAGAGTGGTTCTAGGAAAACTAGAAAGGGAAACTAAAGAAGTCATGGCTATTCAATTATCTGCAGAGCACAATGCAAGCATAGAATCAGTGAGAGAGGAACTGCGGTCGTTGCATCCACACGATTCAAAGATTGTCGTTTTAAGGCACCAAGTTTGGCGCGTGAAGGGCCTCATTCAGGTTTCGAGATCAATTGGTGACGCGTACTTAAAGAACGCAGAGTTCAACAGAGAGCCTCTACCTCTAAAATATAGGCTACCTCAACCTTTTCTCAAGCCAATTCTAATCCCGGAACCAGAAGTATCAGTAATTAAACTCCGACCGGAAGATCAGTTTCTCATATTTGCTTCTGATGGTCTGTGGGAGCATCTTAGCAACCATGACGCCGTCCACATTGTCAACAATTACCCCCGCAAGGGAATAGCAAGGAAGCTGATTGAAGCTGCACTACAAGCAGCAGCCAAGAAAAGGGAAGTGCGGTACACAGACTTGAGGATTATCGAGCCCGGAGTACGACGGCATTTTCACGACGACATCACAGTGGTGGTGTTGTTTCTAAATCCAAGCCTGTTAAAAAATGGAAGCTCCCCCCGCAAGTCTCAGTTTTCATTAAAACCCAGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042578 GO:0043900 GO:0043901 GO:0044237 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0080134 GO:1900055 GO:1900056 GO:1900424 GO:1900425 GO:1905622 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

371

Amino Acids

41.45

Weight (kDa)

9.11

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	71 - 317	3.6e-37	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016879)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g14920
malus_domestica	MD04G1111100.v1.1 MD12G1129700.v1.1
prunus_persica	Prupe.6G245000_v2.0.a1
pyrus_communis	pycom04g10370 pycom12g12590
rosa_chinensis	RchiOBHm_Chr3g0468121
rosa_laevigata	RLG00000024447
rosa_multiflora	Rmu_sc0003659.1_g000011
rosa_roxburghii	Rroxscaffold_6G00413010
rosa_rugosa	Rorug03G0093200
rosa_samantha	Rh3CG162700 Rh3DG163300
rosa_wichuraiana	Rw3G013350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	633
AccII	CGCG	2 cut(s)	648, 689
AciI	CCGC	7 cut(s)	66, 195, 286, 592, 898, 964, 1078
AclWI	GGATC	1 cut(s)	171
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	870
AfaI	GTAC	5 cut(s)	92, 350, 692, 968, 999
AfiI	CCNNNNNNNGG	6 cut(s)	50, 194, 664, 901, 902, 954
AflIII	ACRYGT	2 cut(s)	428, 687
AgsI	TTSAA	5 cut(s)	261, 542, 615, 712, 926
AjiI	CACGTC	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AleI	CACNNNNGTG	1 cut(s)	1028
AluBI	AGCT	7 cut(s)	175, 257, 308, 919, 929, 1071, 1107
AluI	AGCT	7 cut(s)	175, 257, 308, 919, 929, 1071, 1107
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	1 cut(s)	1089
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	5 cut(s)	20, 67, 144, 248, 655
ApeKI	GCWGC	6 cut(s)	106, 134, 305, 929, 941, 944
ApoI	RAATTY	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	648
AspS9I	GGNCC	4 cut(s)	41, 185, 248, 655
AsuC2I	CCSGG	2 cut(s)	776, 993
AsuHPI	GGTGA	2 cut(s)	394, 695
AvaII	GGWCC	2 cut(s)	41, 185
BanI	GGYRCC	1 cut(s)	633
BanII	GRGCYC	1 cut(s)	993
BarI	GAAGNNNNNNTAC	2 cut(s)	918, 950
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	6 cut(s)	118, 121, 317, 916, 953, 956
BccI	CCATC	5 cut(s)	31, 32, 71, 230, 833
BceAI	ACGGC	3 cut(s)	122, 857, 1019
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	2 cut(s)	776, 993
BcoDI	GTCTC	1 cut(s)	1089
BfaI	CTAG	4 cut(s)	489, 500, 509, 1111
BfmI	CTRYAG	3 cut(s)	27, 420, 549
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	7 cut(s)	67, 107, 135, 306, 930, 942, 945
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	7 cut(s)	68, 108, 136, 307, 931, 943, 946
Bme1390I	CCNGG	3 cut(s)	71, 776, 993
Bme18I	GGWCC	2 cut(s)	41, 185
BmgBI	CACGTC	1 cut(s)	50
BmgT120I	GGNCC	4 cut(s)	41, 185, 248, 655
BmiI	GGNNCC	2 cut(s)	635, 780
BmrFI	CCNGG	3 cut(s)	71, 776, 993
BmsI	GCATC	5 cut(s)	308, 322, 425, 610, 862
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	2 cut(s)	743, 997
BpuMI	CCSGG	2 cut(s)	776, 993
Bsa29I	ATCGAT	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	870
BsaWI	WCCGGW	2 cut(s)	182, 808
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 194, 664, 901, 902, 954
Bse3DI	GCAATG	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	71
BseCI	ATCGAT	1 cut(s)	316
BseGI	GGATG	2 cut(s)	40, 601
BseLI	CCNNNNNNNGG	6 cut(s)	50, 194, 664, 901, 902, 954
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	2 cut(s)	300, 1100
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	6 cut(s)	118, 121, 317, 916, 953, 956
BseYI	CCCAGC	1 cut(s)	1103
BsgI	GTGCAG	1 cut(s)	915
Bsh1236I	CGCG	2 cut(s)	648, 689
Bsh1285I	CGRYCG	2 cut(s)	596, 809
BshFI	GGCC	5 cut(s)	22, 69, 146, 250, 657
BshNI	GGYRCC	1 cut(s)	633
BshVI	ATCGAT	1 cut(s)	316
BsiEI	CGRYCG	2 cut(s)	596, 809
BsiHKAI	GWGCWC	1 cut(s)	558
BsiSI	CCGG	4 cut(s)	183, 776, 809, 993
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	6 cut(s)	50, 194, 664, 901, 902, 954
BsmAI	GTCTC	1 cut(s)	1089
BsmFI	GGGAC	1 cut(s)	497
BsnI	GGCC	5 cut(s)	22, 69, 146, 250, 657
Bsp1286I	GDGCHC	2 cut(s)	558, 993
Bsp143I	GATC	4 cut(s)	163, 336, 674, 814
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	7 cut(s)	66, 195, 286, 592, 898, 964, 1078
BspANI	GGCC	5 cut(s)	22, 69, 146, 250, 657
BspCNI	CTCAG	2 cut(s)	301, 1099
BspDI	ATCGAT	1 cut(s)	316
BspFNI	CGCG	2 cut(s)	648, 689
BspLI	GGNNCC	2 cut(s)	635, 780
BspMAI	CTGCAG	3 cut(s)	31, 424, 553
BspPI	GGATC	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	633
BsrDI	GCAATG	1 cut(s)	460
BssMI	GATC	4 cut(s)	163, 336, 674, 814
BssNI	GRCGYC	1 cut(s)	870
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	1027
Bst6I	CTCTTC	1 cut(s)	287
BstACI	GRCGYC	1 cut(s)	870
BstC8I	GCNNGC	4 cut(s)	111, 173, 404, 565
BstDEI	CTNAG	3 cut(s)	309, 857, 1086
BstENI	CCTNNNNNAGG	1 cut(s)	662
BstF5I	GGATG	2 cut(s)	40, 601
BstFNI	CGCG	2 cut(s)	648, 689
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	4 cut(s)	166, 339, 677, 817
BstMAI	GTCTC	1 cut(s)	1089
BstMBI	GATC	4 cut(s)	163, 336, 674, 814
BstMCI	CGRYCG	2 cut(s)	596, 809
BstMWI	GCNNNNNNNGC	7 cut(s)	143, 353, 403, 598, 654, 938, 1077
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	3 cut(s)	113, 325, 432
BstSCI	CCNGG	3 cut(s)	69, 774, 991
BstSFI	CTRYAG	3 cut(s)	27, 420, 549
BstUI	CGCG	2 cut(s)	648, 689
BstV1I	GCAGC	6 cut(s)	118, 121, 317, 916, 953, 956
BstXI	CCANNNNNNTGG	1 cut(s)	77
Bsu15I	ATCGAT	1 cut(s)	316
BsuRI	GGCC	5 cut(s)	22, 69, 146, 250, 657
BsuTUI	ATCGAT	1 cut(s)	316
BtrI	CACGTC	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	40, 601
BtsI	GCAGTG	2 cut(s)	36, 398
BtsIMutI	CAGTG	4 cut(s)	36, 398, 582, 1032
Cac8I	GCNNGC	4 cut(s)	111, 173, 404, 565
CfoI	GCGC	1 cut(s)	648
Cfr13I	GGNCC	4 cut(s)	41, 185, 248, 655
ClaI	ATCGAT	1 cut(s)	316
CseI	GACGC	2 cut(s)	695, 878
Csp6I	GTAC	5 cut(s)	91, 349, 691, 967, 998
CviAII	CATG	7 cut(s)	12, 110, 242, 322, 429, 532, 866
CviQI	GTAC	5 cut(s)	91, 349, 691, 967, 998
DdeI	CTNAG	3 cut(s)	309, 857, 1086
DpnI	GATC	4 cut(s)	165, 338, 676, 816
DpnII	GATC	4 cut(s)	163, 336, 674, 814
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	993
Eco47I	GGWCC	2 cut(s)	41, 185
Eco57I	CTGAAG	1 cut(s)	273
EcoNI	CCTNNNNNAGG	1 cut(s)	662
EcoO109I	RGGNCCY	2 cut(s)	248, 655
EcoRII	CCWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	993
FaeI	CATG	7 cut(s)	15, 113, 245, 325, 432, 535, 869
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	7 cut(s)	11, 109, 241, 321, 428, 531, 865
FauI	CCCGC	2 cut(s)	905, 1085
Fnu4HI	GCNGC	7 cut(s)	67, 107, 135, 306, 930, 942, 945
FokI	GGATG	2 cut(s)	47, 588
FriOI	GRGCYC	1 cut(s)	993
Fsp4HI	GCNGC	7 cut(s)	67, 107, 135, 306, 930, 942, 945
FspBI	CTAG	4 cut(s)	489, 500, 509, 1111
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	7 cut(s)	67, 107, 135, 306, 930, 942, 945
GsaI	CCCAGC	1 cut(s)	1107
HaeIII	GGCC	5 cut(s)	22, 69, 146, 250, 657
HapII	CCGG	4 cut(s)	183, 776, 809, 993
HgaI	GACGC	2 cut(s)	695, 878
HhaI	GCGC	1 cut(s)	648
Hin1I	GRCGYC	1 cut(s)	870
Hin1II	CATG	7 cut(s)	15, 113, 245, 325, 432, 535, 869
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HincII	GTYRAC	1 cut(s)	886
HindII	GTYRAC	1 cut(s)	886
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	4 cut(s)	179, 485, 572, 611
HpaII	CCGG	4 cut(s)	183, 776, 809, 993
HphI	GGTGA	2 cut(s)	394, 695
Hpy166II	GTNNAC	3 cut(s)	877, 886, 969
Hpy188I	TCNGA	3 cut(s)	328, 806, 838
Hpy188III	TCNNGA	5 cut(s)	261, 340, 489, 672, 1013
Hpy8I	GTNNAC	3 cut(s)	877, 886, 969
Hpy99I	CGWCG	3 cut(s)	51, 1005, 1019
HpyAV	CCTTC	2 cut(s)	337, 646
HpyCH4III	ACNGT	1 cut(s)	1027
HpyCH4IV	ACGT	2 cut(s)	49, 333
HpyF10VI	GCNNNNNNNGC	7 cut(s)	143, 353, 403, 598, 654, 938, 1077
HpyF3I	CTNAG	3 cut(s)	309, 857, 1086
HpySE526I	ACGT	2 cut(s)	49, 333
Hsp92I	GRCGYC	1 cut(s)	870
Hsp92II	CATG	7 cut(s)	15, 113, 245, 325, 432, 535, 869
HspAI	GCGC	1 cut(s)	646
Kzo9I	GATC	4 cut(s)	163, 336, 674, 814
LmnI	GCTCC	2 cut(s)	850, 1076
Lsp1109I	GCAGC	6 cut(s)	118, 121, 317, 916, 953, 956
LweI	GCATC	5 cut(s)	308, 322, 425, 610, 862
MaeI	CTAG	4 cut(s)	489, 500, 509, 1111
MaeII	ACGT	2 cut(s)	49, 333
MaeIII	GTNAC	1 cut(s)	683
MalI	GATC	4 cut(s)	165, 338, 676, 816
MboI	GATC	4 cut(s)	163, 336, 674, 814
MboII	GAAGA	3 cut(s)	274, 397, 824
MfeI	CAATTG	1 cut(s)	678
MhlI	GDGCHC	2 cut(s)	558, 993
MluCI	AATT	8 cut(s)	122, 148, 411, 542, 678, 765, 795, 889
MluI	ACGCGT	1 cut(s)	687
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	3 cut(s)	205, 306, 829
Mph1103I	ATGCAT	1 cut(s)	323
MseI	TTAA	5 cut(s)	629, 695, 798, 1058, 1097
MslI	CAYNNNNRTG	2 cut(s)	1025, 1028
MspA1I	CMGCKG	2 cut(s)	66, 308
MspI	CCGG	4 cut(s)	183, 776, 809, 993
MspR9I	CCNGG	3 cut(s)	71, 776, 993
MunI	CAATTG	1 cut(s)	678
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	2 cut(s)	648, 689
MwoI	GCNNNNNNNGC	7 cut(s)	143, 353, 403, 598, 654, 938, 1077
NciI	CCSGG	2 cut(s)	776, 993
NdeII	GATC	4 cut(s)	163, 336, 674, 814
NlaIII	CATG	7 cut(s)	15, 113, 245, 325, 432, 535, 869
NlaIV	GGNNCC	2 cut(s)	635, 780
NmuCI	GTSAC	1 cut(s)	683
NsiI	ATGCAT	1 cut(s)	323
NspI	RCATGY	3 cut(s)	113, 325, 432
OliI	CACNNNNGTG	1 cut(s)	1028
PaeI	GCATGC	1 cut(s)	113
PciI	ACATGT	1 cut(s)	428
PfeI	GAWTC	3 cut(s)	179, 572, 611
PflFI	GACNNNGTC	1 cut(s)	872
PfoI	TCCNGGA	1 cut(s)	774
PkrI	GCNGC	7 cut(s)	68, 108, 136, 307, 931, 943, 946
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PscI	ACATGT	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	69
PspFI	CCCAGC	1 cut(s)	1103
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	635, 780
PspPI	GGNCC	4 cut(s)	41, 185, 248, 655
PstI	CTGCAG	3 cut(s)	31, 424, 553
PsyI	GACNNNGTC	1 cut(s)	872
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	5 cut(s)	92, 350, 692, 968, 999
RsaNI	GTAC	5 cut(s)	91, 349, 691, 967, 998
RseI	CAYNNNNRTG	2 cut(s)	1025, 1028
SaqAI	TTAA	5 cut(s)	629, 695, 798, 1058, 1097
SatI	GCNGC	7 cut(s)	67, 107, 135, 306, 930, 942, 945
Sau3AI	GATC	4 cut(s)	163, 336, 674, 814
Sau96I	GGNCC	4 cut(s)	41, 185, 248, 655
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	3 cut(s)	71, 776, 993
SduI	GDGCHC	2 cut(s)	558, 993
SfaNI	GCATC	5 cut(s)	308, 322, 425, 610, 862
SfcI	CTRYAG	3 cut(s)	27, 420, 549
SinI	GGWCC	2 cut(s)	41, 185
SmiMI	CAYNNNNRTG	2 cut(s)	1025, 1028
SmlI	CTYRAG	2 cut(s)	758, 976
SmoI	CTYRAG	2 cut(s)	758, 976
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	8 cut(s)	122, 148, 411, 542, 678, 765, 795, 889
SsiI	CCGC	7 cut(s)	66, 195, 286, 592, 898, 964, 1078
SspMI	CTAG	4 cut(s)	489, 500, 509, 1111
StyD4I	CCNGG	3 cut(s)	69, 774, 991
TaaI	ACNGT	1 cut(s)	1027
TaiI	ACGT	2 cut(s)	52, 336
TaqI	TCGA	7 cut(s)	46, 159, 177, 316, 339, 671, 987
TasI	AATT	8 cut(s)	122, 148, 411, 542, 678, 765, 795, 889
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	3 cut(s)	179, 572, 611
Tru1I	TTAA	5 cut(s)	629, 695, 798, 1058, 1097
Tru9I	TTAA	5 cut(s)	629, 695, 798, 1058, 1097
TscAI	CASTG	4 cut(s)	36, 398, 582, 1032
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	6 cut(s)	106, 134, 305, 929, 941, 944
Tsp45I	GTSAC	1 cut(s)	683
TspDTI	ATGAA	2 cut(s)	288, 1083
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	4 cut(s)	36, 398, 582, 1032
Tth111I	GACNNNGTC	1 cut(s)	872
VpaK11BI	GGWCC	2 cut(s)	41, 185
XagI	CCTNNNNNAGG	1 cut(s)	662
XapI	RAATTY	1 cut(s)	122
XbaI	TCTAGA	1 cut(s)	488
XceI	RCATGY	3 cut(s)	113, 325, 432
XspI	CTAG	4 cut(s)	489, 500, 509, 1111
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.